Wall clock time and date at job start Tue Mar 31 2020 20:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70314 * 2 1 4 4 C 1.53195 * 109.58264 * 239.64798 * 2 1 3 5 5 H 1.08995 * 109.49702 * 305.56032 * 4 2 1 6 6 N 1.46499 * 109.49629 * 65.62509 * 4 2 1 7 7 C 1.34777 * 119.99597 * 204.93150 * 6 4 2 8 8 O 1.21277 * 120.00560 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99983 * 179.97438 * 7 6 4 10 10 C 1.50699 * 109.47311 * 180.02562 * 9 7 6 11 11 C 1.38647 * 120.79688 * 100.00436 * 10 9 7 12 12 C 1.38185 * 119.17697 * 180.27496 * 11 10 9 13 13 N 1.31876 * 120.79418 * 359.47181 * 12 11 10 14 14 C 1.31848 * 121.74342 * 0.53880 * 13 12 11 15 15 C 1.38350 * 120.73669 * 359.72974 * 14 13 12 16 16 Cl 1.73605 * 120.43221 * 180.02562 * 15 14 13 17 17 C 1.53045 * 109.33842 * 185.59303 * 4 2 1 18 18 C 1.53037 * 109.53841 * 61.34720 * 17 4 2 19 19 C 1.53192 * 109.31320 * 298.63852 * 18 17 4 20 20 N 1.46922 * 108.77560 * 54.63209 * 19 18 17 21 21 C 1.36941 * 120.62831 * 126.43903 * 20 19 18 22 22 H 1.08000 * 119.99938 * 208.99603 * 21 20 19 23 23 C 1.38818 * 120.00108 * 28.99435 * 21 20 19 24 24 N 1.31614 * 119.99815 * 15.03162 * 23 21 20 25 25 Si 1.86803 * 119.99826 * 195.02661 * 23 21 20 26 26 H 1.48496 * 109.47142 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46787 * 120.00356 * 25 23 21 28 28 H 1.48501 * 109.46888 * 240.00376 * 25 23 21 29 29 H 1.08998 * 109.47362 * 180.35907 * 1 2 3 30 30 H 1.09006 * 109.46613 * 300.35450 * 1 2 3 31 31 H 1.08993 * 109.47268 * 60.34831 * 1 2 3 32 32 H 0.96992 * 120.00428 * 24.93415 * 6 4 2 33 33 H 1.08999 * 109.46716 * 60.00256 * 9 7 6 34 34 H 1.09003 * 109.47079 * 300.00708 * 9 7 6 35 35 H 1.07997 * 120.40903 * 359.97438 * 11 10 9 36 36 H 1.08005 * 119.60185 * 179.72660 * 12 11 10 37 37 H 1.07997 * 119.63204 * 179.74919 * 14 13 12 38 38 H 1.09002 * 109.45840 * 181.37089 * 17 4 2 39 39 H 1.09000 * 109.45843 * 301.34030 * 17 4 2 40 40 H 1.09000 * 109.49816 * 58.58667 * 18 17 4 41 41 H 1.09000 * 109.50004 * 178.68148 * 18 17 4 42 42 H 1.08997 * 109.58563 * 174.42322 * 19 18 17 43 43 H 1.08999 * 109.58510 * 294.84544 * 19 18 17 44 44 H 0.96998 * 119.99799 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 1 1.6024 -1.7250 -1.2917 6 7 1.6704 0.0269 -2.4435 7 6 1.5483 -0.6045 -3.6280 8 8 1.7468 -1.7986 -3.7021 9 6 1.1639 0.1732 -4.8603 10 6 1.0958 -0.7595 -6.0420 11 6 -0.1219 -1.2431 -6.4954 12 6 -0.1450 -2.1011 -7.5783 13 7 0.9718 -2.4523 -8.1854 14 6 2.1479 -2.0127 -7.7829 15 6 2.2502 -1.1550 -6.7022 16 17 3.8028 -0.5807 -6.1793 17 6 3.5674 -0.8487 -1.1707 18 6 3.9569 -1.6664 0.0628 19 6 3.4657 -0.9473 1.3231 20 7 2.0233 -0.6993 1.1943 21 6 1.1547 -1.1115 2.1694 22 1 0.1366 -1.3654 1.9135 23 6 1.5827 -1.2031 3.4868 24 7 2.7064 -0.6254 3.8553 25 14 0.5637 -2.1462 4.7365 26 1 -0.6460 -2.6970 4.0743 27 1 1.3725 -3.2589 5.2960 28 1 0.1544 -1.2318 5.8326 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3633 0.5194 0.8869 31 1 -0.3633 0.5084 -0.8930 32 1 1.5112 0.9818 -2.3843 33 1 1.9091 0.9459 -5.0493 34 1 0.1897 0.6376 -4.7077 35 1 -1.0406 -0.9567 -6.0051 36 1 -1.0895 -2.4855 -7.9344 37 1 3.0413 -2.3255 -8.3028 38 1 3.9372 -1.3457 -2.0676 39 1 4.0065 0.1465 -1.1000 40 1 3.4978 -2.6533 0.0049 41 1 5.0411 -1.7709 0.1026 42 1 3.6525 -1.5721 2.1965 43 1 3.9915 0.0014 1.4308 44 1 3.0057 -0.6897 4.7757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993822787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:26 Heat of formation + Delta-G solvation = -12.289120 kcal Electronic energy + Delta-G solvation = -27130.894536 eV Core-core repulsion = 23301.472498 eV Total energy + Delta-G solvation = -3829.422039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.56741 -40.72882 -39.18348 -37.64106 -35.89105 -34.88715 -34.22954 -33.40009 -32.02729 -31.22932 -29.42873 -27.73296 -26.83319 -24.56208 -24.36936 -23.21948 -22.32228 -21.40364 -20.97847 -18.41021 -18.14304 -17.92976 -17.79402 -17.25109 -16.96120 -16.48841 -16.04274 -15.61464 -15.58807 -15.32932 -14.97131 -14.90965 -14.65097 -14.54049 -14.25707 -13.84782 -13.54601 -13.32629 -13.20448 -13.01067 -12.83609 -12.72881 -12.59863 -12.49068 -12.34576 -12.25446 -11.99767 -11.80934 -11.77121 -11.61612 -11.18612 -11.03113 -10.60375 -10.53878 -10.49347 -9.96568 -9.93778 -8.65239 -7.85296 -5.31183 -0.06223 0.06775 1.03095 1.45501 1.48767 1.57587 1.70289 2.17789 2.53375 2.72093 3.30547 3.38598 3.47434 3.62613 3.66986 3.86294 3.93489 3.97991 4.08387 4.21751 4.25028 4.37298 4.42439 4.53337 4.56978 4.63546 4.65228 4.77483 4.82433 4.89159 4.94928 5.04432 5.08759 5.13339 5.24090 5.31032 5.48277 5.50918 5.53394 5.62650 5.70965 5.77191 6.42199 6.64398 6.82894 7.16648 7.34184 7.87489 8.38371 9.21674 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.002744 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.908726 B =10203.317238 C =10817.811066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.164 3.836 3 H 0.035 0.965 4 C 0.151 3.849 5 H 0.055 0.945 6 N -0.707 5.707 7 C 0.517 3.483 8 O -0.576 6.576 9 C -0.103 4.103 10 C -0.025 4.025 11 C -0.148 4.148 12 C 0.095 3.905 13 N -0.495 5.495 14 C 0.100 3.900 15 C -0.088 4.088 16 Cl -0.056 7.056 17 C -0.108 4.108 18 C -0.130 4.130 19 C 0.177 3.823 20 N -0.602 5.602 21 C -0.251 4.251 22 H 0.073 0.927 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.960 3.040 26 H -0.267 1.267 27 H -0.294 1.294 28 H -0.292 1.292 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.174 0.826 36 H 0.191 0.809 37 H 0.173 0.827 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.004 0.996 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 5.006 -23.114 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.057 3.943 3 H 0.052 0.948 4 C 0.044 3.956 5 H 0.073 0.927 6 N -0.359 5.359 7 C 0.304 3.696 8 O -0.455 6.455 9 C -0.142 4.142 10 C -0.034 4.034 11 C -0.168 4.168 12 C -0.062 4.062 13 N -0.204 5.204 14 C -0.057 4.057 15 C -0.117 4.117 16 Cl -0.027 7.027 17 C -0.147 4.147 18 C -0.170 4.170 19 C 0.051 3.949 20 N -0.325 5.325 21 C -0.381 4.381 22 H 0.091 0.909 23 C -0.245 4.245 24 N -0.581 5.581 25 Si 0.789 3.211 26 H -0.192 1.192 27 H -0.222 1.222 28 H -0.219 1.219 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.251 0.749 33 H 0.145 0.855 34 H 0.167 0.833 35 H 0.191 0.809 36 H 0.208 0.792 37 H 0.190 0.810 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.022 0.978 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.055 3.661 -23.673 24.295 hybrid contribution 0.237 0.344 2.035 2.077 sum -3.817 4.005 -21.638 22.334 Atomic orbital electron populations 1.21732 0.94251 1.01012 1.01489 1.20742 0.94422 0.93474 0.85619 0.94783 1.21219 0.94440 0.95501 0.84461 0.92654 1.45862 1.70012 1.12844 1.07144 1.20770 0.76238 0.87694 0.84869 1.90734 1.51538 1.17110 1.86124 1.20819 1.07997 0.97387 0.88041 1.19914 0.92260 0.96330 0.94881 1.22430 0.98477 0.97944 0.97920 1.23391 0.97516 0.93306 0.91945 1.67824 0.98850 1.23140 1.30593 1.22961 0.97065 0.92672 0.93039 1.22122 0.87871 1.02223 0.99444 1.98381 1.26694 1.87469 1.90200 1.21665 0.95800 1.00130 0.97078 1.22022 1.00116 0.98739 0.96115 1.20618 0.83281 0.96065 0.94935 1.44293 1.03089 1.65950 1.19200 1.19496 0.95109 1.36786 0.86710 0.90893 1.25751 0.99009 1.01017 0.98727 1.70164 1.24870 1.46250 1.16768 0.85318 0.78562 0.78022 0.79247 1.19166 1.22154 1.21894 0.94253 0.93375 0.90103 0.74867 0.85489 0.83291 0.80894 0.79182 0.80955 0.92991 0.91646 0.93968 0.91283 0.92742 0.97834 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 7.84 71.98 0.56 -3.72 16 2 C 0.16 6.16 3.03 44.98 0.14 6.30 16 3 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.15 5.04 1.99 45.07 0.09 5.13 16 5 H 0.06 2.23 7.58 -2.39 -0.02 2.22 16 6 N -0.71 -16.81 4.57 -442.16 -2.02 -18.83 16 7 C 0.52 12.60 7.67 87.66 0.67 13.27 16 8 O -0.58 -19.72 15.63 -3.02 -0.05 -19.77 16 9 C -0.10 -1.53 5.35 29.10 0.16 -1.37 16 10 C -0.02 -0.46 4.45 -19.65 -0.09 -0.54 16 11 C -0.15 -2.21 9.78 22.35 0.22 -1.99 16 12 C 0.09 1.52 11.18 84.67 0.95 2.47 16 13 N -0.49 -10.36 10.36 -195.75 -2.03 -12.39 16 14 C 0.10 2.06 10.99 84.72 0.93 2.99 16 15 C -0.09 -1.84 6.25 22.42 0.14 -1.70 16 16 Cl -0.06 -1.18 27.59 -2.72 -0.08 -1.26 16 17 C -0.11 -3.71 5.46 30.62 0.17 -3.54 16 18 C -0.13 -5.13 6.08 30.67 0.19 -4.95 16 19 C 0.18 8.45 5.29 86.36 0.46 8.91 16 20 N -0.60 -28.99 2.99 -675.23 -2.02 -31.01 16 21 C -0.25 -13.27 8.61 84.03 0.72 -12.54 16 22 H 0.07 3.76 6.20 -2.91 -0.02 3.74 16 23 C -0.05 -2.73 4.96 84.86 0.42 -2.31 16 24 N -0.93 -54.31 11.14 21.65 0.24 -54.07 16 25 Si 0.96 44.51 29.58 68.60 2.03 46.53 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 H 0.04 1.43 7.41 -2.39 -0.02 1.41 16 30 H 0.05 1.76 7.66 -2.38 -0.02 1.74 16 31 H 0.08 1.99 7.78 -2.39 -0.02 1.98 16 32 H 0.41 6.98 8.60 -92.71 -0.80 6.18 16 33 H 0.13 1.50 7.46 -2.39 -0.02 1.49 16 34 H 0.15 1.07 8.04 -2.39 -0.02 1.05 16 35 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 36 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.05 2.98 6.06 -2.39 -0.01 2.97 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -71.90 370.24 2.02 -69.88 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.22 Total: 14.52 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.72 Total: 6.40 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -5.83 Total: -116.30 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.05 Total: -19.77 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -71.90 2.02 -69.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993822787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.591 kcal (2) G-P(sol) polarization free energy of solvation -71.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds