Wall clock time and date at job start Tue Mar 31 2020 20:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.70113 * 2 1 4 4 C 1.53618 * 109.66462 * 120.59338 * 2 1 3 5 5 H 1.09005 * 109.63862 * 54.55317 * 4 2 1 6 6 N 1.46501 * 109.43293 * 294.41719 * 4 2 1 7 7 C 1.34775 * 120.00581 * 155.28842 * 6 4 2 8 8 O 1.21285 * 119.99544 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00430 * 179.97438 * 7 6 4 10 10 C 1.50706 * 109.47016 * 179.97438 * 9 7 6 11 11 C 1.38648 * 120.79544 * 264.71914 * 10 9 7 12 12 C 1.38195 * 119.17395 * 179.73475 * 11 10 9 13 13 N 1.31879 * 120.79261 * 0.55396 * 12 11 10 14 14 C 1.31841 * 121.74237 * 359.71953 * 13 12 11 15 15 C 1.38353 * 120.74550 * 0.02562 * 14 13 12 16 16 Cl 1.73594 * 120.43718 * 179.97438 * 15 14 13 17 17 C 1.53039 * 109.24396 * 174.54782 * 4 2 1 18 18 C 1.53044 * 109.53646 * 298.51232 * 17 4 2 19 19 C 1.53189 * 109.31349 * 61.36374 * 18 17 4 20 20 N 1.46923 * 109.58578 * 239.64608 * 2 1 3 21 21 C 1.36940 * 120.63005 * 6.62388 * 20 2 1 22 22 H 1.07996 * 119.99956 * 330.66355 * 21 20 2 23 23 C 1.38815 * 119.99670 * 150.66106 * 21 20 2 24 24 N 1.31617 * 120.00275 * 335.85909 * 23 21 20 25 25 Si 1.86808 * 119.99539 * 155.85786 * 23 21 20 26 26 H 1.48500 * 109.46781 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.46894 * 300.00083 * 25 23 21 28 28 H 1.48495 * 109.46925 * 60.00359 * 25 23 21 29 29 H 1.08996 * 109.47419 * 180.35748 * 1 2 3 30 30 H 1.09002 * 109.46766 * 300.35700 * 1 2 3 31 31 H 1.09001 * 109.46882 * 60.35052 * 1 2 3 32 32 H 0.97003 * 119.99947 * 335.28774 * 6 4 2 33 33 H 1.08999 * 109.47105 * 300.00129 * 9 7 6 34 34 H 1.09004 * 109.47267 * 60.00169 * 9 7 6 35 35 H 1.07997 * 120.41325 * 359.97438 * 11 10 9 36 36 H 1.08002 * 119.60268 * 180.28131 * 12 11 10 37 37 H 1.08004 * 119.63188 * 180.02562 * 14 13 12 38 38 H 1.09005 * 109.46084 * 178.48982 * 17 4 2 39 39 H 1.08994 * 109.45956 * 58.53072 * 17 4 2 40 40 H 1.09004 * 109.49423 * 301.41100 * 18 17 4 41 41 H 1.08997 * 109.49382 * 181.31667 * 18 17 4 42 42 H 1.08997 * 109.58310 * 185.57933 * 19 18 17 43 43 H 1.08997 * 109.70309 * 65.21893 * 19 18 17 44 44 H 0.96997 * 119.99788 * 354.30056 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2452 5 1 1.6096 -1.7337 1.2890 6 7 1.6732 0.0152 2.4460 7 6 1.5567 -0.6194 3.6292 8 8 1.7617 -1.8127 3.7000 9 6 1.1727 0.1537 4.8644 10 6 1.1113 -0.7823 6.0440 11 6 -0.0911 -1.3483 6.4392 12 6 -0.1080 -2.2064 7.5223 13 7 0.9994 -2.4804 8.1839 14 6 2.1598 -1.9570 7.8409 15 6 2.2556 -1.0933 6.7643 16 17 3.7875 -0.4082 6.3200 17 6 3.5712 -0.8498 1.1676 18 6 3.9615 -1.6628 -0.0689 19 6 3.4656 -0.9420 -1.3264 20 7 2.0225 -0.6995 -1.1945 21 6 1.1537 -1.1127 -2.1690 22 1 0.1373 -1.3718 -1.9117 23 6 1.5794 -1.1983 -3.4875 24 7 2.5967 -0.4717 -3.8991 25 14 0.7082 -2.3448 -4.6775 26 1 1.3504 -2.2527 -6.0133 27 1 0.8022 -3.7404 -4.1787 28 1 -0.7200 -1.9531 -4.7863 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5084 -0.8931 32 1 1.5096 0.9697 2.3895 33 1 1.9155 0.9287 5.0534 34 1 0.1963 0.6147 4.7157 35 1 -1.0026 -1.1243 5.9049 36 1 -1.0401 -2.6547 7.8333 37 1 3.0457 -2.2052 8.4066 38 1 3.9443 -1.3480 2.0624 39 1 4.0065 0.1471 1.0990 40 1 3.5060 -2.6515 -0.0128 41 1 5.0460 -1.7631 -0.1108 42 1 3.6532 -1.5638 -2.2018 43 1 3.9874 0.0088 -1.4349 44 1 2.9962 0.1835 -3.3058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993822789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:31 Heat of formation + Delta-G solvation = 4.722442 kcal Electronic energy + Delta-G solvation = -27146.100318 eV Core-core repulsion = 23317.415956 eV Total energy + Delta-G solvation = -3828.684362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.77330 -39.66168 -37.84311 -36.89912 -34.59166 -34.09349 -32.71882 -31.82208 -31.34970 -29.66970 -28.32684 -26.24622 -24.93374 -23.87579 -23.23359 -21.85861 -20.94647 -20.31230 -19.40434 -17.34079 -17.23841 -17.14523 -16.81369 -16.35874 -15.67609 -15.04974 -14.68026 -14.59849 -14.30456 -14.07195 -13.73993 -13.60541 -13.45103 -13.37414 -13.09463 -12.76518 -12.57972 -12.27685 -12.00094 -11.85133 -11.49377 -11.38757 -11.30655 -11.12343 -10.76727 -10.44357 -10.36077 -10.20762 -10.11990 -10.04604 -9.96061 -9.89261 -9.62108 -9.23608 -9.20370 -8.79923 -8.38874 -6.93108 -6.08201 -3.28115 0.63044 0.77482 1.76107 2.67215 3.14439 3.46650 3.49127 3.52278 3.69221 4.08795 4.10496 4.28490 4.55909 4.58668 4.76225 4.89853 4.97613 5.13864 5.16972 5.26331 5.27245 5.41226 5.47362 5.53893 5.63372 5.74950 5.80693 5.93253 6.07103 6.16695 6.21097 6.27917 6.37178 6.45275 6.55681 6.58884 6.66357 6.86439 6.92681 7.09030 7.18316 7.51786 7.61377 7.99553 8.30308 8.54872 9.06793 9.81160 10.24192 11.19223 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.002733 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.639652 B =10241.085078 C =10815.760363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.169 3.831 3 H 0.026 0.974 4 C 0.132 3.868 5 H 0.086 0.914 6 N -0.717 5.717 7 C 0.517 3.483 8 O -0.532 6.532 9 C -0.113 4.113 10 C -0.008 4.008 11 C -0.149 4.149 12 C 0.102 3.898 13 N -0.473 5.473 14 C 0.114 3.886 15 C -0.076 4.076 16 Cl -0.050 7.050 17 C -0.117 4.117 18 C -0.134 4.134 19 C 0.149 3.851 20 N -0.589 5.589 21 C -0.349 4.349 22 H 0.061 0.939 23 C -0.022 4.022 24 N -0.916 5.916 25 Si 1.063 2.937 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.396 0.604 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.017 0.983 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 3.646 21.812 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.062 3.938 3 H 0.043 0.957 4 C 0.027 3.973 5 H 0.104 0.896 6 N -0.368 5.368 7 C 0.301 3.699 8 O -0.408 6.408 9 C -0.153 4.153 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.054 4.054 13 N -0.181 5.181 14 C -0.044 4.044 15 C -0.105 4.105 16 Cl -0.021 7.021 17 C -0.155 4.155 18 C -0.174 4.174 19 C 0.023 3.977 20 N -0.314 5.314 21 C -0.478 4.478 22 H 0.079 0.921 23 C -0.224 4.224 24 N -0.555 5.555 25 Si 0.893 3.107 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.230 0.770 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.162 0.838 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.035 0.965 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.425 1.658 20.926 21.132 hybrid contribution 0.103 1.762 0.793 1.935 sum -2.322 3.420 21.719 22.109 Atomic orbital electron populations 1.21779 0.95419 1.01709 1.00134 1.20639 0.93464 0.93183 0.86548 0.95683 1.21860 0.94958 0.96942 0.83545 0.89551 1.46091 1.70175 1.12250 1.08263 1.20097 0.77617 0.88008 0.84131 1.90744 1.49613 1.14883 1.85538 1.20796 1.05508 0.98008 0.91020 1.19618 0.92038 0.95816 0.94236 1.22060 0.98063 0.98258 0.98493 1.22844 0.96913 0.94098 0.91559 1.67798 0.98513 1.22262 1.29573 1.22748 0.96585 0.91848 0.93235 1.21971 0.88027 1.01274 0.99196 1.98387 1.28086 1.83269 1.92404 1.21752 0.95517 0.99959 0.98305 1.22054 0.99326 0.99801 0.96215 1.21004 0.84098 0.96807 0.95751 1.44123 1.02609 1.65524 1.19106 1.19941 0.96088 1.43684 0.88116 0.92096 1.25848 1.00042 1.00809 0.95700 1.70780 1.25987 1.20808 1.37962 0.83552 0.75021 0.75965 0.76184 1.21114 1.22009 1.21983 0.92650 0.94383 0.91763 0.77014 0.87174 0.87090 0.83837 0.81932 0.81869 0.92909 0.92812 0.92167 0.92799 0.90166 0.96455 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.83 37.16 0.29 -2.11 16 2 C 0.17 3.29 3.05 -67.38 -0.21 3.08 16 3 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.13 2.31 2.01 -67.59 -0.14 2.17 16 5 H 0.09 1.78 7.58 -51.93 -0.39 1.38 16 6 N -0.72 -9.57 4.60 -53.47 -0.25 -9.82 16 7 C 0.52 7.00 7.79 -10.99 -0.09 6.91 16 8 O -0.53 -9.50 15.70 5.55 0.09 -9.42 16 9 C -0.11 -1.05 5.42 -29.04 -0.16 -1.21 16 10 C -0.01 -0.08 4.41 -104.28 -0.46 -0.54 16 11 C -0.15 -1.36 9.80 -39.45 -0.39 -1.75 16 12 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 13 N -0.47 -5.23 10.36 -13.22 -0.14 -5.36 16 14 C 0.11 1.20 10.99 -17.51 -0.19 1.01 16 15 C -0.08 -0.83 6.34 -39.35 -0.25 -1.08 16 16 Cl -0.05 -0.54 27.58 -51.86 -1.43 -1.97 16 17 C -0.12 -2.04 5.46 -26.69 -0.15 -2.19 16 18 C -0.13 -2.60 6.08 -26.61 -0.16 -2.76 16 19 C 0.15 3.41 4.69 -3.71 -0.02 3.39 16 20 N -0.59 -14.04 2.83 -164.53 -0.47 -14.51 16 21 C -0.35 -9.28 8.49 -15.06 -0.13 -9.41 16 22 H 0.06 1.62 6.28 -52.49 -0.33 1.29 16 23 C -0.02 -0.60 4.70 -17.43 -0.08 -0.68 16 24 N -0.92 -26.71 12.45 55.49 0.69 -26.02 16 25 Si 1.06 24.81 29.98 -169.99 -5.10 19.71 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.05 1.07 7.44 -51.93 -0.39 0.69 16 30 H 0.04 0.54 7.82 -51.93 -0.41 0.14 16 31 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 32 H 0.40 4.14 8.60 -40.82 -0.35 3.79 16 33 H 0.11 0.87 7.24 -51.93 -0.38 0.50 16 34 H 0.11 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 2.07 6.38 -51.93 -0.33 1.74 16 43 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 44 H 0.27 7.88 6.69 -40.82 -0.27 7.60 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -32.72 369.52 -9.59 -42.31 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.25 Total: 3.92 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.31 Total: -4.42 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.16 Total: -55.70 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.10 Total: 19.71 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.43 Total: -1.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.72 -9.59 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993822789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.029 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds