Wall clock time and date at job start Tue Mar 31 2020 20:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.70113 * 2 1 4 4 C 1.53618 * 109.66462 * 120.59338 * 2 1 3 5 5 H 1.09005 * 109.63862 * 54.55317 * 4 2 1 6 6 N 1.46501 * 109.43293 * 294.41719 * 4 2 1 7 7 C 1.34775 * 120.00581 * 155.28842 * 6 4 2 8 8 O 1.21285 * 119.99544 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00430 * 179.97438 * 7 6 4 10 10 C 1.50706 * 109.47016 * 179.97438 * 9 7 6 11 11 C 1.38648 * 120.79544 * 264.71914 * 10 9 7 12 12 C 1.38195 * 119.17395 * 179.73475 * 11 10 9 13 13 N 1.31879 * 120.79261 * 0.55396 * 12 11 10 14 14 C 1.31841 * 121.74237 * 359.71953 * 13 12 11 15 15 C 1.38353 * 120.74550 * 0.02562 * 14 13 12 16 16 Cl 1.73594 * 120.43718 * 179.97438 * 15 14 13 17 17 C 1.53039 * 109.24396 * 174.54782 * 4 2 1 18 18 C 1.53044 * 109.53646 * 298.51232 * 17 4 2 19 19 C 1.53189 * 109.31349 * 61.36374 * 18 17 4 20 20 N 1.46923 * 109.58578 * 239.64608 * 2 1 3 21 21 C 1.36940 * 120.63005 * 6.62388 * 20 2 1 22 22 H 1.07996 * 119.99956 * 330.66355 * 21 20 2 23 23 C 1.38815 * 119.99670 * 150.66106 * 21 20 2 24 24 N 1.31617 * 120.00275 * 335.85909 * 23 21 20 25 25 Si 1.86808 * 119.99539 * 155.85786 * 23 21 20 26 26 H 1.48500 * 109.46781 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.46894 * 300.00083 * 25 23 21 28 28 H 1.48495 * 109.46925 * 60.00359 * 25 23 21 29 29 H 1.08996 * 109.47419 * 180.35748 * 1 2 3 30 30 H 1.09002 * 109.46766 * 300.35700 * 1 2 3 31 31 H 1.09001 * 109.46882 * 60.35052 * 1 2 3 32 32 H 0.97003 * 119.99947 * 335.28774 * 6 4 2 33 33 H 1.08999 * 109.47105 * 300.00129 * 9 7 6 34 34 H 1.09004 * 109.47267 * 60.00169 * 9 7 6 35 35 H 1.07997 * 120.41325 * 359.97438 * 11 10 9 36 36 H 1.08002 * 119.60268 * 180.28131 * 12 11 10 37 37 H 1.08004 * 119.63188 * 180.02562 * 14 13 12 38 38 H 1.09005 * 109.46084 * 178.48982 * 17 4 2 39 39 H 1.08994 * 109.45956 * 58.53072 * 17 4 2 40 40 H 1.09004 * 109.49423 * 301.41100 * 18 17 4 41 41 H 1.08997 * 109.49382 * 181.31667 * 18 17 4 42 42 H 1.08997 * 109.58310 * 185.57933 * 19 18 17 43 43 H 1.08997 * 109.70309 * 65.21893 * 19 18 17 44 44 H 0.96997 * 119.99788 * 354.30056 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2452 5 1 1.6096 -1.7337 1.2890 6 7 1.6732 0.0152 2.4460 7 6 1.5567 -0.6194 3.6292 8 8 1.7617 -1.8127 3.7000 9 6 1.1727 0.1537 4.8644 10 6 1.1113 -0.7823 6.0440 11 6 -0.0911 -1.3483 6.4392 12 6 -0.1080 -2.2064 7.5223 13 7 0.9994 -2.4804 8.1839 14 6 2.1598 -1.9570 7.8409 15 6 2.2556 -1.0933 6.7643 16 17 3.7875 -0.4082 6.3200 17 6 3.5712 -0.8498 1.1676 18 6 3.9615 -1.6628 -0.0689 19 6 3.4656 -0.9420 -1.3264 20 7 2.0225 -0.6995 -1.1945 21 6 1.1537 -1.1127 -2.1690 22 1 0.1373 -1.3718 -1.9117 23 6 1.5794 -1.1983 -3.4875 24 7 2.5967 -0.4717 -3.8991 25 14 0.7082 -2.3448 -4.6775 26 1 1.3504 -2.2527 -6.0133 27 1 0.8022 -3.7404 -4.1787 28 1 -0.7200 -1.9531 -4.7863 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5084 -0.8931 32 1 1.5096 0.9697 2.3895 33 1 1.9155 0.9287 5.0534 34 1 0.1963 0.6147 4.7157 35 1 -1.0026 -1.1243 5.9049 36 1 -1.0401 -2.6547 7.8333 37 1 3.0457 -2.2052 8.4066 38 1 3.9443 -1.3480 2.0624 39 1 4.0065 0.1471 1.0990 40 1 3.5060 -2.6515 -0.0128 41 1 5.0460 -1.7631 -0.1108 42 1 3.6532 -1.5638 -2.2018 43 1 3.9874 0.0088 -1.4349 44 1 2.9962 0.1835 -3.3058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993822789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:30 Heat of formation + Delta-G solvation = -15.770372 kcal Electronic energy + Delta-G solvation = -27146.988953 eV Core-core repulsion = 23317.415956 eV Total energy + Delta-G solvation = -3829.572997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.61148 -40.80033 -39.34080 -37.68466 -36.11793 -34.92808 -34.33610 -33.47573 -32.05545 -31.13782 -29.43869 -27.82051 -26.75999 -24.59530 -24.34836 -23.21063 -22.54627 -21.47668 -21.02652 -18.98954 -18.24382 -17.96943 -17.88952 -17.24470 -16.84033 -16.39105 -16.12119 -15.84040 -15.49574 -15.42849 -15.05367 -14.99017 -14.88664 -14.71867 -14.23059 -13.89472 -13.66903 -13.41338 -13.05289 -13.04360 -12.96789 -12.76715 -12.63500 -12.54940 -12.28206 -12.05765 -11.94222 -11.90410 -11.81514 -11.70873 -11.19100 -11.02977 -10.63334 -10.56477 -10.44967 -10.03872 -9.96921 -8.90770 -8.19107 -5.37247 -0.09488 0.03945 0.98824 1.58513 1.63613 1.65794 1.83757 2.11795 2.64610 2.71025 3.24524 3.34719 3.44934 3.48562 3.63195 3.78090 3.87580 3.91156 3.99121 4.07782 4.20732 4.23384 4.38302 4.38852 4.51621 4.52482 4.62409 4.66195 4.70769 4.78978 4.85000 4.92863 5.00355 5.05753 5.09048 5.19415 5.25240 5.35220 5.40790 5.50381 5.57470 5.93150 6.44030 6.57320 6.80255 7.07693 7.27562 7.80488 8.24412 9.05649 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.002733 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.639652 B =10241.085078 C =10815.760363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.165 3.835 3 H 0.035 0.965 4 C 0.151 3.849 5 H 0.054 0.946 6 N -0.707 5.707 7 C 0.518 3.482 8 O -0.577 6.577 9 C -0.103 4.103 10 C -0.024 4.024 11 C -0.148 4.148 12 C 0.096 3.904 13 N -0.494 5.494 14 C 0.101 3.899 15 C -0.090 4.090 16 Cl -0.055 7.055 17 C -0.108 4.108 18 C -0.125 4.125 19 C 0.156 3.844 20 N -0.609 5.609 21 C -0.345 4.345 22 H 0.059 0.941 23 C -0.074 4.074 24 N -0.945 5.945 25 Si 1.108 2.892 26 H -0.294 1.294 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.415 0.585 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.191 0.809 37 H 0.175 0.825 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.012 0.988 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.097 4.552 23.611 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.059 3.941 3 H 0.053 0.947 4 C 0.044 3.956 5 H 0.072 0.928 6 N -0.359 5.359 7 C 0.305 3.695 8 O -0.456 6.456 9 C -0.143 4.143 10 C -0.033 4.033 11 C -0.168 4.168 12 C -0.060 4.060 13 N -0.203 5.203 14 C -0.056 4.056 15 C -0.118 4.118 16 Cl -0.026 7.026 17 C -0.147 4.147 18 C -0.165 4.165 19 C 0.030 3.970 20 N -0.334 5.334 21 C -0.475 4.475 22 H 0.077 0.923 23 C -0.271 4.271 24 N -0.587 5.587 25 Si 0.933 3.067 26 H -0.220 1.220 27 H -0.212 1.212 28 H -0.200 1.200 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.252 0.748 33 H 0.145 0.855 34 H 0.167 0.833 35 H 0.188 0.812 36 H 0.208 0.792 37 H 0.192 0.808 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.871 2.606 22.775 23.248 hybrid contribution 0.521 1.475 0.329 1.599 sum -3.351 4.081 23.104 23.700 Atomic orbital electron populations 1.21690 0.94282 1.00885 1.01264 1.20828 0.94451 0.93268 0.85559 0.94702 1.21282 0.94492 0.95494 0.84327 0.92753 1.45860 1.70022 1.12931 1.07073 1.20785 0.76203 0.87619 0.84881 1.90737 1.51457 1.17173 1.86206 1.20819 1.08004 0.97410 0.88022 1.19891 0.92346 0.96411 0.94674 1.22411 0.98657 0.97427 0.98307 1.23384 0.97419 0.93879 0.91363 1.67830 0.99156 1.22909 1.30448 1.22985 0.97096 0.91962 0.93550 1.22122 0.88185 1.01801 0.99742 1.98378 1.28460 1.83319 1.92451 1.21671 0.95698 1.00259 0.97089 1.21919 1.00370 0.98708 0.95461 1.20836 0.84093 0.96126 0.95956 1.44357 1.02656 1.66429 1.19927 1.20152 0.96331 1.42276 0.88703 0.92334 1.27017 1.00513 1.01837 0.97704 1.70886 1.27725 1.22134 1.37975 0.82938 0.75016 0.74705 0.74020 1.22012 1.21217 1.19994 0.94430 0.90055 0.93723 0.74842 0.85518 0.83301 0.81160 0.79214 0.80786 0.92679 0.91387 0.93808 0.90770 0.93799 0.97008 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.27 7.83 71.98 0.56 -3.71 16 2 C 0.17 6.23 3.05 45.12 0.14 6.36 16 3 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 4 C 0.15 5.04 2.01 45.21 0.09 5.13 16 5 H 0.05 2.21 7.58 -2.38 -0.02 2.20 16 6 N -0.71 -16.78 4.60 -441.48 -2.03 -18.81 16 7 C 0.52 12.62 7.79 87.66 0.68 13.31 16 8 O -0.58 -19.79 15.70 -3.04 -0.05 -19.83 16 9 C -0.10 -1.54 5.42 29.10 0.16 -1.38 16 10 C -0.02 -0.45 4.41 -19.64 -0.09 -0.53 16 11 C -0.15 -2.28 9.80 22.36 0.22 -2.06 16 12 C 0.10 1.56 11.18 84.68 0.95 2.50 16 13 N -0.49 -10.29 10.36 -195.74 -2.03 -12.32 16 14 C 0.10 2.05 10.99 84.72 0.93 2.98 16 15 C -0.09 -1.84 6.34 22.42 0.14 -1.70 16 16 Cl -0.05 -1.10 27.58 -2.72 -0.08 -1.18 16 17 C -0.11 -3.65 5.46 30.62 0.17 -3.48 16 18 C -0.12 -4.81 6.08 30.67 0.19 -4.63 16 19 C 0.16 7.25 4.69 86.36 0.41 7.66 16 20 N -0.61 -29.24 2.83 -674.44 -1.91 -31.15 16 21 C -0.34 -18.54 8.49 84.03 0.71 -17.82 16 22 H 0.06 3.13 6.28 -2.91 -0.02 3.11 16 23 C -0.07 -4.14 4.70 84.86 0.40 -3.74 16 24 N -0.94 -56.60 12.45 21.65 0.27 -56.33 16 25 Si 1.11 50.68 29.98 68.60 2.06 52.74 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 29 H 0.04 1.41 7.44 -2.39 -0.02 1.40 16 30 H 0.08 2.06 7.82 -2.39 -0.02 2.04 16 31 H 0.04 1.70 7.62 -2.39 -0.02 1.68 16 32 H 0.41 6.96 8.60 -92.71 -0.80 6.17 16 33 H 0.13 1.52 7.24 -2.39 -0.02 1.50 16 34 H 0.15 1.11 8.07 -2.38 -0.02 1.09 16 35 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.04 2.35 6.38 -2.39 -0.02 2.33 16 43 H 0.01 0.56 7.84 -2.39 -0.02 0.54 16 44 H 0.26 15.48 6.69 -92.71 -0.62 14.86 16 Total: -1.00 -73.52 369.52 2.27 -71.25 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.37 Total: 16.76 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.66 Total: -1.12 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -5.70 Total: -118.61 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.06 Total: 52.74 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -73.52 2.27 -71.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993822789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.479 kcal (2) G-P(sol) polarization free energy of solvation -73.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds