Wall clock time and date at job start Tue Mar 31 2020 20:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47389 * 2 1 4 4 N 1.46503 * 109.47519 * 119.99961 * 2 1 3 5 5 C 1.34773 * 119.99837 * 275.00619 * 4 2 1 6 6 O 1.21519 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.48073 * 119.99654 * 179.97438 * 5 4 2 8 8 C 1.39873 * 120.93390 * 359.97438 * 7 5 4 9 9 C 1.38083 * 119.01821 * 180.02562 * 8 7 5 10 10 N 1.31850 * 120.94243 * 0.02562 * 9 8 7 11 11 C 1.31757 * 122.07142 * 359.97438 * 10 9 8 12 12 C 1.38358 * 120.87029 * 359.97438 * 11 10 9 13 13 Cl 1.73605 * 120.51909 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47234 * 240.00329 * 2 1 3 15 15 C 1.53037 * 109.46409 * 180.02562 * 14 2 1 16 16 C 1.53190 * 109.31674 * 178.61420 * 15 14 2 17 17 N 1.46920 * 108.77859 * 54.62970 * 16 15 14 18 18 C 1.36934 * 120.63318 * 126.41100 * 17 16 15 19 19 H 1.08003 * 120.00692 * 207.65946 * 18 17 16 20 20 C 1.38812 * 119.99817 * 27.66544 * 18 17 16 21 21 N 1.31619 * 120.00011 * 17.37464 * 20 18 17 22 22 Si 1.86802 * 120.00290 * 197.37482 * 20 18 17 23 23 H 1.48507 * 109.46833 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46912 * 119.99653 * 22 20 18 25 25 H 1.48493 * 109.47423 * 240.00019 * 22 20 18 26 26 C 1.46934 * 118.73919 * 306.39905 * 17 16 15 27 27 C 1.53032 * 109.46208 * 59.99652 * 14 2 1 28 28 H 1.09001 * 109.47389 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47434 * 300.00062 * 1 2 3 30 30 H 1.09001 * 109.47597 * 59.99697 * 1 2 3 31 31 H 0.97002 * 120.00003 * 94.99711 * 4 2 1 32 32 H 1.07994 * 120.48905 * 0.04859 * 8 7 5 33 33 H 1.07998 * 119.52979 * 179.71650 * 9 8 7 34 34 H 1.08000 * 119.56448 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.45623 * 300.02410 * 14 2 1 36 36 H 1.09007 * 109.49721 * 298.56057 * 15 14 2 37 37 H 1.08999 * 109.49971 * 58.65839 * 15 14 2 38 38 H 1.08996 * 109.58315 * 294.84293 * 16 15 14 39 39 H 1.09004 * 109.58938 * 174.42292 * 16 15 14 40 40 H 0.96996 * 120.00234 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.57732 * 293.81758 * 26 17 16 42 42 H 1.08999 * 109.58810 * 173.39196 * 26 17 16 43 43 H 1.08998 * 109.50173 * 301.34101 * 27 14 2 44 44 H 1.09000 * 109.49937 * 61.43751 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8583 1.1609 2.4116 7 6 2.6401 -0.7164 3.5662 8 6 2.9775 -2.0733 3.5257 9 6 3.4329 -2.6849 4.6769 10 7 3.5509 -2.0088 5.8026 11 6 3.2446 -0.7300 5.8861 12 6 2.7817 -0.0374 4.7815 13 17 2.3802 1.6473 4.9019 14 6 2.0400 -0.7212 -1.2493 15 6 3.5703 -0.7216 -1.2487 16 6 4.0773 -1.4744 -2.4829 17 7 3.4744 -0.8769 -3.6821 18 6 4.2600 -0.4512 -4.7197 19 1 3.9209 0.3489 -5.3610 20 6 5.4923 -1.0482 -4.9475 21 7 5.7652 -2.2193 -4.4122 22 14 6.7633 -0.1898 -6.0139 23 1 6.2151 1.1049 -6.4921 24 1 7.9920 0.0575 -5.2174 25 1 7.0934 -1.0488 -7.1793 26 6 2.0125 -0.7449 -3.7469 27 6 1.5297 0.0004 -2.4986 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.2491 -1.6318 1.1526 32 1 2.8837 -2.6340 2.6075 33 1 3.6913 -3.7333 4.6560 34 1 3.3572 -0.2156 6.8290 35 1 1.6761 -1.7487 -1.2493 36 1 3.9345 0.3055 -1.2742 37 1 3.9337 -1.2147 -0.3471 38 1 3.7906 -2.5237 -2.4140 39 1 5.1627 -1.3931 -2.5403 40 1 6.6264 -2.6363 -4.5710 41 1 1.5575 -1.7348 -3.7812 42 1 1.7356 -0.1821 -4.6384 43 1 0.4400 0.0215 -2.4870 44 1 1.9136 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997320571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:51 Heat of formation + Delta-G solvation = 15.040786 kcal Electronic energy + Delta-G solvation = -26933.942707 eV Core-core repulsion = 23105.705782 eV Total energy + Delta-G solvation = -3828.236925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.98368 -39.57486 -37.96139 -36.80549 -35.41358 -33.54789 -32.62978 -31.48756 -30.87089 -30.27976 -28.84178 -25.70116 -25.15019 -23.96526 -23.04171 -22.03075 -21.11529 -20.54666 -19.30674 -18.41594 -17.18749 -16.80179 -16.51896 -15.82148 -15.74104 -15.31426 -14.86597 -14.51157 -14.33939 -14.16222 -13.86374 -13.55732 -13.42458 -13.34769 -12.98705 -12.60054 -12.43437 -12.28233 -12.21169 -11.73114 -11.57135 -11.42207 -11.25041 -10.99194 -10.71794 -10.50557 -10.46187 -10.27737 -10.24317 -10.20973 -9.92606 -9.69005 -9.54105 -9.48918 -9.36572 -9.04011 -8.49143 -6.69569 -5.81306 -3.22859 0.20598 0.47152 1.75790 2.64613 2.88550 3.35622 3.36051 3.43975 3.46111 3.92940 4.16173 4.23695 4.38268 4.48249 4.70234 4.88673 5.06511 5.15009 5.25409 5.26789 5.35484 5.36132 5.46268 5.57930 5.67528 5.76613 5.92037 5.94545 6.03967 6.06664 6.22387 6.27278 6.36679 6.51703 6.56768 6.64325 6.73170 6.79659 6.95422 7.30678 7.32824 7.37376 7.61656 7.78064 8.02165 8.42918 9.19526 9.83189 10.39326 11.27157 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.002751 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.720635 B =10177.276225 C =10804.319813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.089 0.911 4 N -0.709 5.709 5 C 0.551 3.449 6 O -0.510 6.510 7 C -0.079 4.079 8 C -0.129 4.129 9 C 0.098 3.902 10 N -0.456 5.456 11 C 0.108 3.892 12 C -0.045 4.045 13 Cl -0.016 7.016 14 C -0.084 4.084 15 C -0.134 4.134 16 C 0.172 3.828 17 N -0.592 5.592 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.146 3.854 27 C -0.126 4.126 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.150 0.850 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.016 0.984 39 H 0.087 0.913 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 -0.178 18.953 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.336 3.664 6 O -0.385 6.385 7 C -0.091 4.091 8 C -0.149 4.149 9 C -0.058 4.058 10 N -0.165 5.165 11 C -0.051 4.051 12 C -0.076 4.076 13 Cl 0.013 6.987 14 C -0.103 4.103 15 C -0.173 4.173 16 C 0.046 3.954 17 N -0.315 5.315 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.730 3.270 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.019 3.981 27 C -0.165 4.165 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.234 0.766 32 H 0.167 0.833 33 H 0.188 0.812 34 H 0.188 0.812 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.484 0.327 19.661 21.416 hybrid contribution 0.555 0.334 -1.289 1.443 sum -7.928 0.662 18.373 20.021 Atomic orbital electron populations 1.22210 0.95427 1.01971 1.02437 1.21221 0.93649 0.97697 0.83242 0.89329 1.46015 1.66475 1.14078 1.09475 1.17949 0.78890 0.86744 0.82844 1.90864 1.48669 1.14582 1.84364 1.20403 1.00262 0.94326 0.94145 1.22459 0.97993 0.93376 1.01097 1.22895 0.94763 1.00782 0.87354 1.67701 1.13305 1.07593 1.27941 1.22873 0.94654 0.90028 0.97495 1.22290 1.01206 0.89079 0.94994 1.98437 1.91350 1.10944 1.97954 1.21341 0.97269 0.99026 0.92709 1.22232 0.93539 1.01695 0.99853 1.20759 0.99483 0.92599 0.82587 1.44065 0.99543 1.72017 1.15905 1.19235 0.99129 1.12100 1.07547 0.91672 1.25020 1.00040 0.95339 0.99314 1.70037 1.22621 1.14111 1.48033 0.86251 0.81761 0.79149 0.79797 1.20247 1.21580 1.21745 1.20895 0.86085 0.96407 0.94685 1.22081 0.98755 1.00045 0.95644 0.92630 0.92616 0.90954 0.76620 0.83278 0.81243 0.81218 0.91445 0.92625 0.93659 0.96609 0.89528 0.93747 0.96549 0.92774 0.92622 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.13 37.15 0.34 -1.53 16 2 C 0.15 1.89 2.16 -67.93 -0.15 1.75 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 4 N -0.71 -8.17 4.32 -54.68 -0.24 -8.40 16 5 C 0.55 7.11 7.76 -12.23 -0.09 7.02 16 6 O -0.51 -8.07 13.83 5.35 0.07 -8.00 16 7 C -0.08 -0.86 5.91 -104.62 -0.62 -1.48 16 8 C -0.13 -1.04 9.61 -39.03 -0.38 -1.42 16 9 C 0.10 0.76 11.17 -17.60 -0.20 0.57 16 10 N -0.46 -4.32 10.33 -13.27 -0.14 -4.46 16 11 C 0.11 0.99 10.99 -17.54 -0.19 0.79 16 12 C -0.05 -0.49 6.38 -38.90 -0.25 -0.74 16 13 Cl -0.02 -0.19 26.24 -51.86 -1.36 -1.55 16 14 C -0.08 -1.24 1.79 -90.58 -0.16 -1.41 16 15 C -0.13 -2.36 5.22 -26.61 -0.14 -2.50 16 16 C 0.17 3.89 5.31 -3.72 -0.02 3.87 16 17 N -0.59 -14.35 2.99 -172.32 -0.52 -14.87 16 18 C -0.25 -6.77 9.59 -15.06 -0.14 -6.91 16 19 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 20 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 21 N -0.90 -25.74 11.19 55.49 0.62 -25.11 16 22 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.15 2.90 6.52 -3.70 -0.02 2.88 16 27 C -0.13 -2.00 5.04 -26.61 -0.13 -2.14 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 31 H 0.40 3.71 6.53 -40.82 -0.27 3.44 16 32 H 0.15 0.84 6.54 -52.49 -0.34 0.50 16 33 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.04 0.70 7.41 -51.93 -0.38 0.32 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.06 0.75 6.36 -51.93 -0.33 0.42 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -31.70 365.36 -9.45 -41.15 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.13 Total: 0.56 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.24 Total: -1.31 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.27 Total: -52.84 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.07 Total: -8.00 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.36 Total: -1.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.70 -9.45 -41.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997320571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.186 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds