Wall clock time and date at job start Tue Mar 31 2020 20:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47389 * 2 1 4 4 N 1.46503 * 109.47519 * 119.99961 * 2 1 3 5 5 C 1.34773 * 119.99837 * 275.00619 * 4 2 1 6 6 O 1.21519 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.48073 * 119.99654 * 179.97438 * 5 4 2 8 8 C 1.39873 * 120.93390 * 359.97438 * 7 5 4 9 9 C 1.38083 * 119.01821 * 180.02562 * 8 7 5 10 10 N 1.31850 * 120.94243 * 0.02562 * 9 8 7 11 11 C 1.31757 * 122.07142 * 359.97438 * 10 9 8 12 12 C 1.38358 * 120.87029 * 359.97438 * 11 10 9 13 13 Cl 1.73605 * 120.51909 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47234 * 240.00329 * 2 1 3 15 15 C 1.53037 * 109.46409 * 180.02562 * 14 2 1 16 16 C 1.53190 * 109.31674 * 178.61420 * 15 14 2 17 17 N 1.46920 * 108.77859 * 54.62970 * 16 15 14 18 18 C 1.36934 * 120.63318 * 126.41100 * 17 16 15 19 19 H 1.08003 * 120.00692 * 207.65946 * 18 17 16 20 20 C 1.38812 * 119.99817 * 27.66544 * 18 17 16 21 21 N 1.31619 * 120.00011 * 17.37464 * 20 18 17 22 22 Si 1.86802 * 120.00290 * 197.37482 * 20 18 17 23 23 H 1.48507 * 109.46833 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46912 * 119.99653 * 22 20 18 25 25 H 1.48493 * 109.47423 * 240.00019 * 22 20 18 26 26 C 1.46934 * 118.73919 * 306.39905 * 17 16 15 27 27 C 1.53032 * 109.46208 * 59.99652 * 14 2 1 28 28 H 1.09001 * 109.47389 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47434 * 300.00062 * 1 2 3 30 30 H 1.09001 * 109.47597 * 59.99697 * 1 2 3 31 31 H 0.97002 * 120.00003 * 94.99711 * 4 2 1 32 32 H 1.07994 * 120.48905 * 0.04859 * 8 7 5 33 33 H 1.07998 * 119.52979 * 179.71650 * 9 8 7 34 34 H 1.08000 * 119.56448 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.45623 * 300.02410 * 14 2 1 36 36 H 1.09007 * 109.49721 * 298.56057 * 15 14 2 37 37 H 1.08999 * 109.49971 * 58.65839 * 15 14 2 38 38 H 1.08996 * 109.58315 * 294.84293 * 16 15 14 39 39 H 1.09004 * 109.58938 * 174.42292 * 16 15 14 40 40 H 0.96996 * 120.00234 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.57732 * 293.81758 * 26 17 16 42 42 H 1.08999 * 109.58810 * 173.39196 * 26 17 16 43 43 H 1.08998 * 109.50173 * 301.34101 * 27 14 2 44 44 H 1.09000 * 109.49937 * 61.43751 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8583 1.1609 2.4116 7 6 2.6401 -0.7164 3.5662 8 6 2.9775 -2.0733 3.5257 9 6 3.4329 -2.6849 4.6769 10 7 3.5509 -2.0088 5.8026 11 6 3.2446 -0.7300 5.8861 12 6 2.7817 -0.0374 4.7815 13 17 2.3802 1.6473 4.9019 14 6 2.0400 -0.7212 -1.2493 15 6 3.5703 -0.7216 -1.2487 16 6 4.0773 -1.4744 -2.4829 17 7 3.4744 -0.8769 -3.6821 18 6 4.2600 -0.4512 -4.7197 19 1 3.9209 0.3489 -5.3610 20 6 5.4923 -1.0482 -4.9475 21 7 5.7652 -2.2193 -4.4122 22 14 6.7633 -0.1898 -6.0139 23 1 6.2151 1.1049 -6.4921 24 1 7.9920 0.0575 -5.2174 25 1 7.0934 -1.0488 -7.1793 26 6 2.0125 -0.7449 -3.7469 27 6 1.5297 0.0004 -2.4986 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.2491 -1.6318 1.1526 32 1 2.8837 -2.6340 2.6075 33 1 3.6913 -3.7333 4.6560 34 1 3.3572 -0.2156 6.8290 35 1 1.6761 -1.7487 -1.2493 36 1 3.9345 0.3055 -1.2742 37 1 3.9337 -1.2147 -0.3471 38 1 3.7906 -2.5237 -2.4140 39 1 5.1627 -1.3931 -2.5403 40 1 6.6264 -2.6363 -4.5710 41 1 1.5575 -1.7348 -3.7812 42 1 1.7356 -0.1821 -4.6384 43 1 0.4400 0.0215 -2.4870 44 1 1.9136 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997320571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:50 Heat of formation + Delta-G solvation = -4.137357 kcal Electronic energy + Delta-G solvation = -26934.774334 eV Core-core repulsion = 23105.705782 eV Total energy + Delta-G solvation = -3829.068552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.79051 -40.53924 -39.31057 -37.62956 -36.80327 -34.74478 -33.88584 -32.42451 -32.07140 -31.81179 -30.22370 -27.18731 -26.23956 -24.79175 -24.31598 -23.57964 -22.31505 -21.61225 -20.77208 -19.37459 -18.63323 -17.98570 -17.27400 -16.88102 -16.77129 -16.52616 -16.21633 -15.74478 -15.29851 -15.20397 -15.12956 -14.88345 -14.81730 -14.68358 -14.31148 -13.98303 -13.54932 -13.25363 -13.19782 -13.08285 -13.00275 -12.76884 -12.64410 -12.43094 -12.22805 -12.15753 -11.94606 -11.79935 -11.48349 -11.35063 -11.10811 -11.10377 -11.02692 -10.52892 -10.46464 -10.13674 -10.02701 -8.65421 -7.87063 -5.30539 -0.56196 -0.18076 0.97938 1.44145 1.47114 1.56600 1.76854 1.96069 2.51042 2.62676 3.26995 3.33995 3.40462 3.53127 3.69181 3.70711 3.76671 3.98253 4.05959 4.08229 4.42481 4.46538 4.50596 4.53817 4.59702 4.61579 4.73876 4.76176 4.83071 4.93294 5.00867 5.07196 5.11941 5.21899 5.30689 5.34353 5.40331 5.45101 5.47826 5.57851 5.67930 5.81066 6.40611 6.43399 6.67197 7.09287 7.17138 7.89962 8.39374 9.18694 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.002751 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.720635 B =10177.276225 C =10804.319813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.065 0.935 4 N -0.701 5.701 5 C 0.550 3.450 6 O -0.545 6.545 7 C -0.097 4.097 8 C -0.119 4.119 9 C 0.103 3.897 10 N -0.470 5.470 11 C 0.109 3.891 12 C -0.061 4.061 13 Cl -0.034 7.034 14 C -0.073 4.073 15 C -0.119 4.119 16 C 0.178 3.822 17 N -0.613 5.613 18 C -0.260 4.260 19 H 0.062 0.938 20 C -0.050 4.050 21 N -0.931 5.931 22 Si 0.960 3.040 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.140 3.860 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.411 0.589 32 H 0.177 0.823 33 H 0.204 0.796 34 H 0.188 0.812 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.004 0.996 39 H 0.047 0.953 40 H 0.249 0.751 41 H 0.021 0.979 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 -1.189 19.833 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.083 0.917 4 N -0.353 5.353 5 C 0.336 3.664 6 O -0.423 6.423 7 C -0.109 4.109 8 C -0.140 4.140 9 C -0.053 4.053 10 N -0.179 5.179 11 C -0.049 4.049 12 C -0.091 4.091 13 Cl -0.005 7.005 14 C -0.092 4.092 15 C -0.158 4.158 16 C 0.052 3.948 17 N -0.337 5.337 18 C -0.391 4.391 19 H 0.080 0.920 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.789 3.211 23 H -0.194 1.194 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.015 3.985 27 C -0.155 4.155 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.249 0.751 32 H 0.194 0.806 33 H 0.221 0.779 34 H 0.205 0.795 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.483 -0.692 20.550 22.644 hybrid contribution 0.846 0.573 -1.572 1.875 sum -8.637 -0.118 18.978 20.851 Atomic orbital electron populations 1.22146 0.93710 1.03082 1.02403 1.20947 0.94794 0.96218 0.82833 0.91686 1.45886 1.66086 1.14605 1.08710 1.18254 0.78252 0.86416 0.83522 1.90847 1.50262 1.16180 1.84976 1.20385 1.01671 0.95556 0.93267 1.22757 0.96625 0.92148 1.02421 1.23497 0.93200 1.02095 0.86538 1.67787 1.13646 1.07605 1.28890 1.23136 0.93939 0.90081 0.97743 1.22442 1.02487 0.88434 0.95768 1.98425 1.91638 1.12448 1.98012 1.21209 0.94809 1.00025 0.93133 1.22011 0.95834 0.99758 0.98242 1.20576 0.97313 0.92589 0.84298 1.44351 1.01353 1.72127 1.15827 1.19518 0.99846 1.11795 1.07932 0.92007 1.25699 1.01732 0.96015 1.01060 1.70165 1.22730 1.15309 1.49579 0.85313 0.79307 0.78366 0.78121 1.19407 1.21829 1.21803 1.21074 0.83688 0.97047 0.96676 1.21956 1.00786 0.98666 0.94074 0.90881 0.93425 0.90263 0.75077 0.80576 0.77896 0.79470 0.89837 0.94625 0.91319 0.97832 0.93453 0.94182 0.96144 0.93178 0.89090 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.13 71.98 0.66 -2.47 16 2 C 0.16 3.74 2.16 44.99 0.10 3.83 16 3 H 0.06 1.92 7.58 -2.39 -0.02 1.90 16 4 N -0.70 -14.55 4.32 -445.21 -1.92 -16.47 16 5 C 0.55 13.51 7.76 86.85 0.67 14.18 16 6 O -0.55 -17.18 13.83 -3.78 -0.05 -17.23 16 7 C -0.10 -1.96 5.91 -19.86 -0.12 -2.07 16 8 C -0.12 -1.57 9.61 22.63 0.22 -1.36 16 9 C 0.10 1.26 11.17 84.65 0.95 2.21 16 10 N -0.47 -7.80 10.33 -195.91 -2.02 -9.83 16 11 C 0.11 1.84 10.99 84.73 0.93 2.77 16 12 C -0.06 -1.27 6.38 22.71 0.14 -1.12 16 13 Cl -0.03 -0.81 26.24 -2.72 -0.07 -0.88 16 14 C -0.07 -1.98 1.79 -10.77 -0.02 -2.00 16 15 C -0.12 -4.10 5.22 30.67 0.16 -3.94 16 16 C 0.18 8.12 5.31 86.36 0.46 8.58 16 17 N -0.61 -29.86 2.99 -699.09 -2.09 -31.95 16 18 C -0.26 -14.25 9.59 84.03 0.81 -13.45 16 19 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 20 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 21 N -0.93 -54.19 11.19 21.65 0.24 -53.94 16 22 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 C 0.14 5.45 6.52 86.36 0.56 6.01 16 27 C -0.12 -3.45 5.04 30.67 0.15 -3.29 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.08 1.49 6.40 -2.39 -0.02 1.47 16 31 H 0.41 6.27 6.53 -92.71 -0.61 5.67 16 32 H 0.18 1.25 6.54 -2.91 -0.02 1.23 16 33 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.07 2.01 7.41 -2.39 -0.02 1.99 16 38 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.05 2.53 6.04 -2.38 -0.01 2.51 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 43 H 0.09 2.11 6.36 -2.39 -0.02 2.10 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -70.81 365.36 2.62 -68.20 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.42 Total: 9.65 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.09 Total: 5.54 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -5.80 Total: -112.19 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.07 Total: -0.88 kcal Total: -70.81 2.62 -68.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997320571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.059 kcal (2) G-P(sol) polarization free energy of solvation -70.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds