Wall clock time and date at job start Tue Mar 31 2020 20:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47369 * 2 1 4 4 N 1.46501 * 109.46982 * 119.99793 * 2 1 3 5 5 C 1.34776 * 120.00124 * 274.99836 * 4 2 1 6 6 O 1.21548 * 120.00068 * 359.97438 * 5 4 2 7 7 C 1.47843 * 120.00047 * 180.02562 * 5 4 2 8 8 C 1.39565 * 120.55256 * 359.97438 * 7 5 4 9 9 N 1.31664 * 120.59075 * 179.70515 * 8 7 5 10 10 C 1.31947 * 121.89770 * 0.27985 * 9 8 7 11 11 C 1.38428 * 121.05913 * 359.97438 * 10 9 8 12 12 Cl 1.73604 * 120.35857 * 180.02562 * 11 10 9 13 13 C 1.38508 * 119.28218 * 0.02562 * 11 10 9 14 14 C 1.52994 * 109.47104 * 239.99782 * 2 1 3 15 15 C 1.53049 * 109.46160 * 180.02562 * 14 2 1 16 16 C 1.53193 * 109.31380 * 178.60272 * 15 14 2 17 17 N 1.46923 * 108.76539 * 54.65440 * 16 15 14 18 18 C 1.36932 * 120.63205 * 126.40530 * 17 16 15 19 19 H 1.08000 * 119.99993 * 331.82702 * 18 17 16 20 20 C 1.38814 * 120.00220 * 151.82356 * 18 17 16 21 21 N 1.31616 * 120.00146 * 343.07375 * 20 18 17 22 22 Si 1.86799 * 120.00002 * 163.06810 * 20 18 17 23 23 H 1.48500 * 109.47256 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46910 * 120.00516 * 22 20 18 25 25 H 1.48492 * 109.47280 * 240.00238 * 22 20 18 26 26 C 1.46925 * 118.73790 * 306.38368 * 17 16 15 27 27 C 1.53036 * 109.46278 * 59.97350 * 14 2 1 28 28 H 1.08995 * 109.46869 * 60.00370 * 1 2 3 29 29 H 1.09000 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46788 * 299.99850 * 1 2 3 31 31 H 0.96998 * 120.00306 * 95.00350 * 4 2 1 32 32 H 1.07997 * 119.70182 * 359.97438 * 8 7 5 33 33 H 1.07999 * 119.46892 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.86436 * 179.97438 * 13 11 10 35 35 H 1.09001 * 109.46125 * 299.99652 * 14 2 1 36 36 H 1.09003 * 109.49393 * 298.56739 * 15 14 2 37 37 H 1.08997 * 109.49723 * 58.65702 * 15 14 2 38 38 H 1.08998 * 109.59249 * 294.86704 * 16 15 14 39 39 H 1.09000 * 109.70137 * 174.50251 * 16 15 14 40 40 H 0.96999 * 120.00507 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.58497 * 293.81874 * 26 17 16 42 42 H 1.09002 * 109.70577 * 173.46853 * 26 17 16 43 43 H 1.09002 * 109.49516 * 301.33731 * 27 14 2 44 44 H 1.09002 * 109.49912 * 61.39927 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8585 1.1613 2.4116 7 6 2.6404 -0.7150 3.5642 8 6 2.9756 -2.0689 3.5146 9 7 3.4205 -2.6887 4.5876 10 6 3.5621 -2.0677 5.7432 11 6 3.2466 -0.7265 5.8765 12 17 3.4406 0.0728 7.4054 13 6 2.7744 -0.0290 4.7769 14 6 2.0400 -0.7213 -1.2492 15 6 3.5705 -0.7217 -1.2486 16 6 4.0774 -1.4749 -2.4826 17 7 3.4748 -0.8771 -3.6818 18 6 4.2606 -0.4516 -4.7193 19 1 5.2718 -0.1221 -4.5311 20 6 3.7577 -0.4438 -6.0131 21 7 2.6779 -1.1380 -6.3036 22 14 4.6134 0.5520 -7.3419 23 1 5.7965 1.2373 -6.7623 24 1 5.0521 -0.3536 -8.4339 25 1 3.6722 1.5636 -7.8858 26 6 2.0130 -0.7448 -3.7468 27 6 1.5292 -0.0001 -2.4986 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2491 -1.6317 1.1527 32 1 2.8732 -2.6118 2.5867 33 1 3.9309 -2.6144 6.5984 34 1 2.5201 1.0179 4.8523 35 1 1.6766 -1.7489 -1.2489 36 1 3.9345 0.3054 -1.2741 37 1 3.9338 -1.2146 -0.3469 38 1 3.7904 -2.5242 -2.4137 39 1 5.1629 -1.3959 -2.5410 40 1 2.3262 -1.1323 -7.2076 41 1 1.5578 -1.7347 -3.7812 42 1 1.7340 -0.1833 -4.6384 43 1 0.4395 0.0205 -2.4867 44 1 1.9123 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997344489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:39 Heat of formation + Delta-G solvation = 5.568525 kcal Electronic energy + Delta-G solvation = -26542.423720 eV Core-core repulsion = 22713.776047 eV Total energy + Delta-G solvation = -3828.647673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.10724 -39.62684 -37.97248 -37.15631 -35.47546 -33.26740 -32.93456 -31.98560 -30.98665 -29.72651 -29.07889 -25.66739 -25.09916 -24.14036 -23.03057 -22.07296 -21.08780 -20.60137 -19.28698 -18.43889 -17.46057 -17.07066 -16.71078 -15.91223 -15.75347 -15.38360 -14.89262 -14.51830 -14.21013 -14.03203 -13.72219 -13.60961 -13.42433 -13.34377 -13.11898 -12.95642 -12.56151 -12.38515 -12.30820 -11.87070 -11.75254 -11.44113 -11.17815 -11.01925 -10.74031 -10.64424 -10.46146 -10.36197 -10.22126 -10.19833 -9.97505 -9.88874 -9.61147 -9.54663 -9.47988 -9.09510 -8.48503 -6.68060 -5.80320 -3.22585 0.03710 0.47893 1.44431 2.47878 2.88353 3.29335 3.36168 3.44438 3.46566 3.73905 4.11230 4.23350 4.29885 4.48782 4.53058 4.73550 4.91764 5.14172 5.27582 5.29977 5.36186 5.39599 5.48306 5.62015 5.65831 5.77354 5.80639 5.88994 6.02745 6.10634 6.21221 6.29482 6.36546 6.44972 6.58278 6.67209 6.73505 6.81235 6.96016 7.17207 7.27958 7.36662 7.64128 7.78980 7.95424 8.44155 9.20545 9.83935 10.40414 11.28169 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.002173 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.213870 B =12885.051304 C =13189.328050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.562 3.438 6 O -0.531 6.531 7 C -0.169 4.169 8 C 0.139 3.861 9 N -0.468 5.468 10 C 0.135 3.865 11 C -0.098 4.098 12 Cl -0.046 7.046 13 C -0.009 4.009 14 C -0.084 4.084 15 C -0.126 4.126 16 C 0.146 3.854 17 N -0.592 5.592 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.172 3.828 27 C -0.134 4.134 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.399 0.601 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.393 -1.526 24.266 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.347 3.653 6 O -0.409 6.409 7 C -0.175 4.175 8 C -0.020 4.020 9 N -0.176 5.176 10 C -0.023 4.023 11 C -0.127 4.127 12 Cl -0.017 7.017 13 C -0.036 4.036 14 C -0.103 4.103 15 C -0.166 4.166 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.215 1.215 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.185 0.815 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.434 -1.506 24.176 24.345 hybrid contribution 0.295 0.934 -0.528 1.112 sum -2.139 -0.572 23.649 23.752 Atomic orbital electron populations 1.22209 0.95251 1.02114 1.02530 1.21263 0.93901 0.97666 0.83087 0.89296 1.46064 1.66342 1.14046 1.09614 1.17859 0.78135 0.86516 0.82751 1.90801 1.50102 1.15205 1.84755 1.21112 1.05311 0.95749 0.95318 1.23190 0.90841 0.90591 0.97348 1.67886 1.12950 1.38000 0.98798 1.23057 0.93307 0.89771 0.96174 1.22029 1.06247 0.95060 0.89384 1.98405 1.95930 1.79591 1.27801 1.21688 0.91133 1.01408 0.89392 1.21354 0.96474 0.99356 0.93165 1.22056 0.94445 1.01464 0.98614 1.20885 0.96584 0.93888 0.86736 1.44056 1.02051 1.69869 1.15533 1.19220 0.97240 1.35992 0.85579 0.91746 1.25040 0.98437 0.99161 0.97065 1.70032 1.24601 1.40942 1.19195 0.86246 0.78971 0.79821 0.81883 1.20278 1.21753 1.21548 1.20763 0.83278 0.96828 0.94562 1.22270 0.98898 1.00115 0.96040 0.90728 0.92522 0.92686 0.76600 0.81457 0.81198 0.82353 0.91347 0.92272 0.93480 0.96621 0.92930 0.93705 0.96477 0.89438 0.92724 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.13 37.16 0.34 -1.59 16 2 C 0.14 1.85 2.16 -67.93 -0.15 1.70 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 N -0.71 -7.63 4.32 -54.76 -0.24 -7.86 16 5 C 0.56 6.71 7.75 -12.33 -0.10 6.62 16 6 O -0.53 -8.18 16.08 5.32 0.09 -8.10 16 7 C -0.17 -1.65 5.89 -104.82 -0.62 -2.26 16 8 C 0.14 1.16 10.71 -17.13 -0.18 0.98 16 9 N -0.47 -4.19 10.34 -12.88 -0.13 -4.32 16 10 C 0.13 1.02 10.97 -17.43 -0.19 0.83 16 11 C -0.10 -0.79 6.34 -39.41 -0.25 -1.04 16 12 Cl -0.05 -0.33 28.98 -51.86 -1.50 -1.84 16 13 C -0.01 -0.09 9.52 -38.83 -0.37 -0.46 16 14 C -0.08 -1.23 1.79 -90.58 -0.16 -1.40 16 15 C -0.13 -2.01 5.22 -26.61 -0.14 -2.15 16 16 C 0.15 2.89 6.52 -3.71 -0.02 2.87 16 17 N -0.59 -14.35 2.99 -172.32 -0.52 -14.87 16 18 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 19 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 21 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 22 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 27 C -0.13 -2.34 5.04 -26.62 -0.13 -2.47 16 28 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.40 3.32 6.45 -40.82 -0.26 3.06 16 32 H 0.17 1.01 6.42 -52.49 -0.34 0.67 16 33 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.16 1.46 7.74 -52.49 -0.41 1.06 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.62 7.41 -51.93 -0.38 0.24 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 2.26 6.07 -51.93 -0.31 1.95 16 43 H 0.05 0.85 6.36 -51.93 -0.33 0.52 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -31.21 369.25 -9.47 -40.68 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.10 Total: 0.88 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.22 Total: -1.45 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.26 Total: -52.24 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.21 -9.47 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997344489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.252 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds