Wall clock time and date at job start Tue Mar 31 2020 20:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47369 * 2 1 4 4 N 1.46501 * 109.46982 * 119.99793 * 2 1 3 5 5 C 1.34776 * 120.00124 * 274.99836 * 4 2 1 6 6 O 1.21548 * 120.00068 * 359.97438 * 5 4 2 7 7 C 1.47843 * 120.00047 * 180.02562 * 5 4 2 8 8 C 1.39565 * 120.55256 * 359.97438 * 7 5 4 9 9 N 1.31664 * 120.59075 * 179.70515 * 8 7 5 10 10 C 1.31947 * 121.89770 * 0.27985 * 9 8 7 11 11 C 1.38428 * 121.05913 * 359.97438 * 10 9 8 12 12 Cl 1.73604 * 120.35857 * 180.02562 * 11 10 9 13 13 C 1.38508 * 119.28218 * 0.02562 * 11 10 9 14 14 C 1.52994 * 109.47104 * 239.99782 * 2 1 3 15 15 C 1.53049 * 109.46160 * 180.02562 * 14 2 1 16 16 C 1.53193 * 109.31380 * 178.60272 * 15 14 2 17 17 N 1.46923 * 108.76539 * 54.65440 * 16 15 14 18 18 C 1.36932 * 120.63205 * 126.40530 * 17 16 15 19 19 H 1.08000 * 119.99993 * 331.82702 * 18 17 16 20 20 C 1.38814 * 120.00220 * 151.82356 * 18 17 16 21 21 N 1.31616 * 120.00146 * 343.07375 * 20 18 17 22 22 Si 1.86799 * 120.00002 * 163.06810 * 20 18 17 23 23 H 1.48500 * 109.47256 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46910 * 120.00516 * 22 20 18 25 25 H 1.48492 * 109.47280 * 240.00238 * 22 20 18 26 26 C 1.46925 * 118.73790 * 306.38368 * 17 16 15 27 27 C 1.53036 * 109.46278 * 59.97350 * 14 2 1 28 28 H 1.08995 * 109.46869 * 60.00370 * 1 2 3 29 29 H 1.09000 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46788 * 299.99850 * 1 2 3 31 31 H 0.96998 * 120.00306 * 95.00350 * 4 2 1 32 32 H 1.07997 * 119.70182 * 359.97438 * 8 7 5 33 33 H 1.07999 * 119.46892 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.86436 * 179.97438 * 13 11 10 35 35 H 1.09001 * 109.46125 * 299.99652 * 14 2 1 36 36 H 1.09003 * 109.49393 * 298.56739 * 15 14 2 37 37 H 1.08997 * 109.49723 * 58.65702 * 15 14 2 38 38 H 1.08998 * 109.59249 * 294.86704 * 16 15 14 39 39 H 1.09000 * 109.70137 * 174.50251 * 16 15 14 40 40 H 0.96999 * 120.00507 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.58497 * 293.81874 * 26 17 16 42 42 H 1.09002 * 109.70577 * 173.46853 * 26 17 16 43 43 H 1.09002 * 109.49516 * 301.33731 * 27 14 2 44 44 H 1.09002 * 109.49912 * 61.39927 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8585 1.1613 2.4116 7 6 2.6404 -0.7150 3.5642 8 6 2.9756 -2.0689 3.5146 9 7 3.4205 -2.6887 4.5876 10 6 3.5621 -2.0677 5.7432 11 6 3.2466 -0.7265 5.8765 12 17 3.4406 0.0728 7.4054 13 6 2.7744 -0.0290 4.7769 14 6 2.0400 -0.7213 -1.2492 15 6 3.5705 -0.7217 -1.2486 16 6 4.0774 -1.4749 -2.4826 17 7 3.4748 -0.8771 -3.6818 18 6 4.2606 -0.4516 -4.7193 19 1 5.2718 -0.1221 -4.5311 20 6 3.7577 -0.4438 -6.0131 21 7 2.6779 -1.1380 -6.3036 22 14 4.6134 0.5520 -7.3419 23 1 5.7965 1.2373 -6.7623 24 1 5.0521 -0.3536 -8.4339 25 1 3.6722 1.5636 -7.8858 26 6 2.0130 -0.7448 -3.7468 27 6 1.5292 -0.0001 -2.4986 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2491 -1.6317 1.1527 32 1 2.8732 -2.6118 2.5867 33 1 3.9309 -2.6144 6.5984 34 1 2.5201 1.0179 4.8523 35 1 1.6766 -1.7489 -1.2489 36 1 3.9345 0.3054 -1.2741 37 1 3.9338 -1.2146 -0.3469 38 1 3.7904 -2.5242 -2.4137 39 1 5.1629 -1.3959 -2.5410 40 1 2.3262 -1.1323 -7.2076 41 1 1.5578 -1.7347 -3.7812 42 1 1.7340 -0.1833 -4.6384 43 1 0.4395 0.0205 -2.4867 44 1 1.9123 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997344489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:37 Heat of formation + Delta-G solvation = -13.019858 kcal Electronic energy + Delta-G solvation = -26543.229773 eV Core-core repulsion = 22713.776047 eV Total energy + Delta-G solvation = -3829.453726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86696 -40.56146 -39.31778 -37.74856 -36.85868 -34.63211 -33.78087 -33.17367 -32.10341 -31.36404 -30.35064 -27.17324 -26.13155 -24.81375 -24.41174 -23.63498 -22.25678 -21.64892 -20.75976 -19.33671 -18.64170 -18.12884 -17.74054 -16.95704 -16.71456 -16.49667 -16.24396 -15.76246 -15.30803 -15.28997 -15.01979 -14.85885 -14.71927 -14.43122 -14.31278 -13.99752 -13.69909 -13.52273 -13.37698 -13.15459 -12.92558 -12.71849 -12.64047 -12.40475 -12.33567 -12.13343 -11.99392 -11.77400 -11.55914 -11.47113 -11.11993 -11.08668 -11.05666 -10.66457 -10.52529 -10.24985 -10.05334 -8.64537 -7.86433 -5.30786 -0.62908 -0.17545 0.84270 1.44897 1.47551 1.57252 1.66687 1.99020 2.51546 2.58097 3.14214 3.27710 3.50765 3.53690 3.62228 3.69488 3.76060 3.87080 3.97211 4.08589 4.17481 4.42794 4.48530 4.58395 4.61899 4.67410 4.73554 4.76929 4.82618 4.92858 5.01265 5.06259 5.13713 5.16868 5.20616 5.30703 5.38656 5.45996 5.49366 5.57853 5.68049 5.82998 6.41168 6.42655 6.56023 7.08005 7.17642 7.90311 8.40087 9.19436 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.002173 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.213870 B =12885.051304 C =13189.328050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.068 0.932 4 N -0.700 5.700 5 C 0.566 3.434 6 O -0.571 6.571 7 C -0.180 4.180 8 C 0.146 3.854 9 N -0.482 5.482 10 C 0.142 3.858 11 C -0.100 4.100 12 Cl -0.040 7.040 13 C -0.016 4.016 14 C -0.073 4.073 15 C -0.114 4.114 16 C 0.141 3.859 17 N -0.613 5.613 18 C -0.260 4.260 19 H 0.061 0.939 20 C -0.050 4.050 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.177 3.823 27 C -0.122 4.122 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.413 0.587 32 H 0.192 0.808 33 H 0.197 0.803 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.021 0.979 39 H 0.047 0.953 40 H 0.249 0.751 41 H 0.001 0.999 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 -2.422 26.280 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.086 0.914 4 N -0.351 5.351 5 C 0.352 3.648 6 O -0.452 6.452 7 C -0.186 4.186 8 C -0.012 4.012 9 N -0.191 5.191 10 C -0.015 4.015 11 C -0.129 4.129 12 Cl -0.011 7.011 13 C -0.043 4.043 14 C -0.092 4.092 15 C -0.153 4.153 16 C 0.015 3.985 17 N -0.336 5.336 18 C -0.390 4.390 19 H 0.079 0.921 20 C -0.246 4.246 21 N -0.579 5.579 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.219 1.219 25 H -0.217 1.217 26 C 0.051 3.949 27 C -0.161 4.161 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.252 0.748 32 H 0.209 0.791 33 H 0.213 0.787 34 H 0.170 0.830 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.019 0.981 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.140 -2.430 26.223 26.422 hybrid contribution 0.249 1.171 -1.072 1.607 sum -1.892 -1.259 25.151 25.254 Atomic orbital electron populations 1.22163 0.94171 1.03080 1.02246 1.20923 0.94594 0.96363 0.82900 0.91427 1.45876 1.65905 1.14633 1.08683 1.18116 0.77292 0.86007 0.83347 1.90786 1.51950 1.17030 1.85392 1.20908 1.06889 0.96353 0.94444 1.23511 0.89562 0.89935 0.98163 1.67982 1.13580 1.38223 0.99271 1.23494 0.91854 0.89603 0.96580 1.22027 1.06216 0.95286 0.89324 1.98410 1.95879 1.79562 1.27229 1.21740 0.91292 1.01371 0.89905 1.21205 0.95518 0.99920 0.92586 1.21908 0.95227 1.00206 0.97982 1.21060 0.96314 0.94453 0.86646 1.44341 1.02533 1.70546 1.16210 1.19496 0.97432 1.35460 0.86624 0.92092 1.25734 0.99408 1.00415 0.99029 1.70167 1.26022 1.42422 1.19282 0.85291 0.78120 0.78286 0.79270 1.19412 1.21875 1.21689 1.20586 0.82822 0.95932 0.95547 1.22064 1.00220 0.98813 0.95001 0.90876 0.90894 0.93153 0.74843 0.79140 0.78674 0.82991 0.89839 0.93881 0.89904 0.96064 0.93462 0.94145 0.98059 0.93244 0.90471 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 9.13 71.98 0.66 -2.75 16 2 C 0.16 3.70 2.16 44.99 0.10 3.80 16 3 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 4 N -0.70 -13.24 4.32 -445.43 -1.92 -15.17 16 5 C 0.57 12.62 7.75 86.79 0.67 13.29 16 6 O -0.57 -17.32 16.08 -3.87 -0.06 -17.38 16 7 C -0.18 -3.17 5.89 -19.99 -0.12 -3.29 16 8 C 0.15 2.04 10.71 85.04 0.91 2.95 16 9 N -0.48 -7.24 10.34 -194.67 -2.01 -9.26 16 10 C 0.14 1.78 10.97 84.72 0.93 2.71 16 11 C -0.10 -1.41 6.34 22.38 0.14 -1.27 16 12 Cl -0.04 -0.51 28.98 -2.72 -0.08 -0.59 16 13 C -0.02 -0.28 9.52 22.75 0.22 -0.06 16 14 C -0.07 -1.99 1.79 -10.77 -0.02 -2.01 16 15 C -0.11 -3.41 5.22 30.68 0.16 -3.25 16 16 C 0.14 5.46 6.52 86.36 0.56 6.02 16 17 N -0.61 -29.97 2.99 -699.11 -2.09 -32.06 16 18 C -0.26 -14.24 9.58 84.03 0.81 -13.44 16 19 H 0.06 3.31 7.88 -2.91 -0.02 3.28 16 20 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 21 N -0.93 -54.66 11.19 21.65 0.24 -54.42 16 22 Si 0.96 44.98 29.59 68.60 2.03 47.01 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 C 0.18 8.16 5.30 86.36 0.46 8.62 16 27 C -0.12 -4.17 5.04 30.67 0.15 -4.02 16 28 H 0.07 1.59 6.40 -2.39 -0.02 1.58 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.41 5.35 6.45 -92.71 -0.60 4.76 16 32 H 0.19 1.56 6.42 -2.91 -0.02 1.54 16 33 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.15 2.77 7.74 -2.91 -0.02 2.75 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.90 7.41 -2.39 -0.02 1.88 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 40 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 42 H 0.05 2.65 6.07 -2.39 -0.01 2.63 16 43 H 0.08 2.30 6.36 -2.39 -0.02 2.28 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.08 369.25 2.58 -66.50 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.43 Total: 10.47 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 6.05 Total: 4.90 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -5.79 Total: -110.90 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.06 Total: -17.38 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -69.08 2.58 -66.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997344489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.483 kcal (2) G-P(sol) polarization free energy of solvation -69.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds