Wall clock time and date at job start Tue Mar 31 2020 20:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47379 * 2 1 4 4 N 1.46507 * 109.46804 * 120.00289 * 2 1 3 5 5 C 1.34780 * 119.99436 * 274.99714 * 4 2 1 6 6 O 1.21521 * 120.00339 * 359.97438 * 5 4 2 7 7 C 1.48110 * 119.99407 * 180.02562 * 5 4 2 8 8 C 1.39350 * 119.70405 * 179.72437 * 7 5 4 9 9 C 1.38531 * 119.07419 * 179.79594 * 8 7 5 10 10 C 1.38768 * 118.47780 * 0.46891 * 9 8 7 11 11 Cl 1.73597 * 120.33500 * 179.77218 * 10 9 8 12 12 C 1.38721 * 119.32427 * 359.75418 * 10 9 8 13 13 N 1.31488 * 120.88417 * 0.02562 * 12 10 9 14 14 C 1.52998 * 109.46965 * 239.99577 * 2 1 3 15 15 C 1.53035 * 109.45893 * 180.02562 * 14 2 1 16 16 C 1.53201 * 109.31602 * 178.61770 * 15 14 2 17 17 N 1.46925 * 108.76946 * 54.63280 * 16 15 14 18 18 C 1.36944 * 120.62365 * 126.42007 * 17 16 15 19 19 H 1.07994 * 120.00298 * 332.59512 * 18 17 16 20 20 C 1.38814 * 119.99742 * 152.60506 * 18 17 16 21 21 N 1.31617 * 120.00116 * 159.36187 * 20 18 17 22 22 Si 1.86803 * 120.00010 * 339.35977 * 20 18 17 23 23 H 1.48494 * 109.47328 * 92.91077 * 22 20 18 24 24 H 1.48504 * 109.46905 * 212.91397 * 22 20 18 25 25 H 1.48497 * 109.46935 * 332.90991 * 22 20 18 26 26 C 1.46917 * 118.74326 * 306.39437 * 17 16 15 27 27 C 1.53045 * 109.45874 * 60.00462 * 14 2 1 28 28 H 1.08998 * 109.46704 * 60.00044 * 1 2 3 29 29 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46772 * 300.00416 * 1 2 3 31 31 H 0.96991 * 120.00140 * 95.00161 * 4 2 1 32 32 H 1.07999 * 120.46224 * 359.97438 * 8 7 5 33 33 H 1.07996 * 120.75992 * 180.20390 * 9 8 7 34 34 H 1.08007 * 119.55873 * 179.97438 * 12 10 9 35 35 H 1.08996 * 109.45573 * 300.03821 * 14 2 1 36 36 H 1.09000 * 109.50195 * 298.56987 * 15 14 2 37 37 H 1.09003 * 109.49888 * 58.66737 * 15 14 2 38 38 H 1.08998 * 109.58319 * 294.85188 * 16 15 14 39 39 H 1.08996 * 109.58998 * 174.42541 * 16 15 14 40 40 H 0.96998 * 119.99837 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.58718 * 293.82289 * 26 17 16 42 42 H 1.09003 * 109.58804 * 173.40084 * 26 17 16 43 43 H 1.09002 * 109.49474 * 301.33527 * 27 14 2 44 44 H 1.09003 * 109.49712 * 61.43137 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8585 1.1609 2.4116 7 6 2.6412 -0.7164 3.5663 8 6 2.7774 -0.0139 4.7621 9 6 3.2367 -0.6808 5.8861 10 6 3.5539 -2.0270 5.7732 11 17 4.1393 -2.9083 7.1496 12 6 3.3981 -2.6615 4.5494 13 7 2.9557 -2.0043 3.5000 14 6 2.0400 -0.7213 -1.2492 15 6 3.5704 -0.7218 -1.2486 16 6 4.0774 -1.4747 -2.4828 17 7 3.4745 -0.8770 -3.6819 18 6 4.2603 -0.4515 -4.7196 19 1 5.2754 -0.1337 -4.5332 20 6 3.7519 -0.4285 -6.0111 21 7 4.3148 0.3312 -6.9266 22 14 2.2686 -1.4760 -6.4497 23 1 1.0296 -0.6755 -6.2799 24 1 2.3791 -1.9240 -7.8613 25 1 2.2184 -2.6614 -5.5568 26 6 2.0127 -0.7450 -3.7468 27 6 1.5298 0.0003 -2.4986 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2490 -1.6318 1.1526 32 1 2.5256 1.0351 4.8125 33 1 3.3494 -0.1638 6.8275 34 1 3.6443 -3.7090 4.4572 35 1 1.6760 -1.7487 -1.2492 36 1 3.9345 0.3053 -1.2740 37 1 3.9337 -1.2148 -0.3470 38 1 3.7906 -2.5240 -2.4139 39 1 5.1628 -1.3934 -2.5401 40 1 3.9597 0.3470 -7.8291 41 1 1.5576 -1.7349 -3.7811 42 1 1.7358 -0.1823 -4.6384 43 1 0.4400 0.0214 -2.4870 44 1 1.9138 1.0204 -2.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997398438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:22 Heat of formation + Delta-G solvation = -9.708814 kcal Electronic energy + Delta-G solvation = -26590.963449 eV Core-core repulsion = 22761.653301 eV Total energy + Delta-G solvation = -3829.310148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84140 -40.57768 -39.46030 -37.73679 -36.95857 -34.64709 -33.79407 -33.11713 -32.26606 -31.96275 -30.49053 -27.18685 -26.04234 -24.87741 -24.32052 -24.12854 -22.33361 -21.60018 -20.96392 -19.35459 -18.69595 -18.12990 -17.68821 -17.22308 -16.81318 -16.38669 -16.08919 -15.91208 -15.40799 -15.28292 -15.21130 -15.04917 -14.66204 -14.48759 -14.35914 -14.28385 -13.74661 -13.63826 -13.53794 -13.46159 -13.05873 -12.73715 -12.58369 -12.45521 -12.38377 -12.18944 -12.01216 -11.64887 -11.53950 -11.48589 -11.22650 -11.16758 -11.05275 -10.76921 -10.63705 -10.26146 -10.00126 -8.90604 -8.15184 -5.46532 -0.68203 0.00022 0.85285 1.31507 1.42771 1.52460 1.54334 1.98459 2.43413 2.63015 2.98653 3.07608 3.37763 3.57073 3.60309 3.68203 3.76210 3.88724 3.92153 3.96899 4.35489 4.38162 4.44510 4.50202 4.56956 4.58770 4.66543 4.71562 4.79266 4.81866 4.86641 4.98769 5.01321 5.08960 5.10795 5.19693 5.23773 5.28119 5.37080 5.43235 5.60468 5.88578 6.13851 6.29299 6.60524 6.94637 7.08323 7.65286 8.05148 9.04989 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.002294 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.361049 B =12202.881977 C =12786.307048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.068 0.932 4 N -0.690 5.690 5 C 0.568 3.432 6 O -0.565 6.565 7 C 0.065 3.935 8 C -0.102 4.102 9 C -0.064 4.064 10 C -0.070 4.070 11 Cl -0.035 7.035 12 C 0.112 3.888 13 N -0.453 5.453 14 C -0.075 4.075 15 C -0.117 4.117 16 C 0.144 3.856 17 N -0.622 5.622 18 C -0.248 4.248 19 H 0.046 0.954 20 C -0.040 4.040 21 N -0.960 5.960 22 Si 0.952 3.048 23 H -0.272 1.272 24 H -0.313 1.313 25 H -0.257 1.257 26 C 0.119 3.881 27 C -0.120 4.120 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.418 0.582 32 H 0.161 0.839 33 H 0.180 0.820 34 H 0.195 0.805 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.261 0.739 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.781 -7.530 30.912 32.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.086 0.914 4 N -0.341 5.341 5 C 0.353 3.647 6 O -0.444 6.444 7 C -0.073 4.073 8 C -0.123 4.123 9 C -0.090 4.090 10 C -0.099 4.099 11 Cl -0.006 7.006 12 C -0.049 4.049 13 N -0.165 5.165 14 C -0.094 4.094 15 C -0.156 4.156 16 C 0.020 3.980 17 N -0.347 5.347 18 C -0.378 4.378 19 H 0.064 0.936 20 C -0.234 4.234 21 N -0.607 5.607 22 Si 0.780 3.220 23 H -0.199 1.199 24 H -0.243 1.243 25 H -0.182 1.182 26 C -0.005 4.005 27 C -0.159 4.159 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.255 0.745 32 H 0.178 0.822 33 H 0.198 0.802 34 H 0.212 0.788 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.034 -7.146 30.080 31.707 hybrid contribution 0.132 -0.092 -0.095 0.187 sum -6.902 -7.238 29.985 31.609 Atomic orbital electron populations 1.22169 0.93818 1.03111 1.02498 1.20992 0.94893 0.96381 0.83014 0.91362 1.45880 1.64703 1.14985 1.08504 1.18072 0.77579 0.85743 0.83302 1.90782 1.52094 1.16360 1.85194 1.21174 1.00648 0.91045 0.94401 1.22263 0.96338 1.02642 0.91080 1.21872 0.94513 0.92188 1.00422 1.22466 1.01756 0.94381 0.91276 1.98421 1.86247 1.75049 1.40910 1.23241 0.94284 1.01617 0.85739 1.67673 1.09642 1.07692 1.31491 1.21228 0.95317 1.00290 0.92582 1.21906 0.95475 1.00204 0.97993 1.21088 0.96553 0.95010 0.85394 1.44506 1.01878 1.71243 1.17037 1.18854 0.96953 1.35521 0.86476 0.93617 1.25963 1.01779 1.00117 0.95580 1.69985 1.45633 1.40775 1.04266 0.85831 0.79848 0.80663 0.75623 1.19892 1.24251 1.18167 1.21425 0.83693 0.97856 0.97571 1.21987 1.01016 0.98973 0.93923 0.90371 0.90929 0.93150 0.74467 0.82173 0.80246 0.78792 0.89144 0.94078 0.90164 0.94117 0.93337 0.93029 0.94312 0.93482 0.89158 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.13 71.98 0.66 -2.64 16 2 C 0.15 3.65 2.16 44.99 0.10 3.75 16 3 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 4 N -0.69 -15.14 4.35 -445.13 -1.94 -17.07 16 5 C 0.57 13.85 7.77 86.86 0.68 14.52 16 6 O -0.57 -17.20 15.98 -3.78 -0.06 -17.26 16 7 C 0.06 1.26 6.75 41.90 0.28 1.54 16 8 C -0.10 -1.57 9.63 22.61 0.22 -1.35 16 9 C -0.06 -0.67 9.97 22.47 0.22 -0.45 16 10 C -0.07 -0.77 6.35 22.51 0.14 -0.63 16 11 Cl -0.04 -0.33 28.99 -2.72 -0.08 -0.41 16 12 C 0.11 1.40 10.98 84.86 0.93 2.33 16 13 N -0.45 -7.79 9.54 -184.81 -1.76 -9.56 16 14 C -0.08 -1.99 1.79 -10.77 -0.02 -2.01 16 15 C -0.12 -3.54 5.22 30.67 0.16 -3.38 16 16 C 0.14 5.43 6.52 86.37 0.56 5.99 16 17 N -0.62 -29.08 2.77 -699.10 -1.94 -31.02 16 18 C -0.25 -14.31 10.04 84.03 0.84 -13.47 16 19 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 20 C -0.04 -2.37 5.23 84.86 0.44 -1.93 16 21 N -0.96 -61.36 13.97 21.65 0.30 -61.05 16 22 Si 0.95 46.62 24.34 68.60 1.67 48.29 16 23 H -0.27 -12.50 6.62 99.48 0.66 -11.84 16 24 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 25 H -0.26 -11.88 6.64 99.48 0.66 -11.22 16 26 C 0.12 4.87 4.20 86.36 0.36 5.24 16 27 C -0.12 -3.79 5.04 30.67 0.15 -3.63 16 28 H 0.08 1.56 6.40 -2.39 -0.02 1.54 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.42 7.88 7.71 -92.72 -0.72 7.17 16 32 H 0.16 2.34 7.64 -2.91 -0.02 2.32 16 33 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 34 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 2.03 7.41 -2.39 -0.02 2.01 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 40 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.04 1.49 7.08 -2.39 -0.02 1.47 16 42 H 0.05 2.17 4.50 -2.39 -0.01 2.16 16 43 H 0.09 2.32 6.36 -2.39 -0.02 2.30 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -72.39 365.02 2.15 -70.24 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.22 Total: 13.96 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.74 Total: 3.89 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -5.33 Total: -118.70 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.06 Total: -17.26 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.67 Total: 48.29 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -72.39 2.15 -70.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997398438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.527 kcal (2) G-P(sol) polarization free energy of solvation -72.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds