Wall clock time and date at job start Tue Mar 31 2020 20:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46728 * 2 1 4 4 N 1.46500 * 109.47222 * 119.99820 * 2 1 3 5 5 C 1.34772 * 120.00129 * 275.00154 * 4 2 1 6 6 O 1.21526 * 120.00559 * 0.02562 * 5 4 2 7 7 C 1.48084 * 119.99947 * 179.97438 * 5 4 2 8 8 N 1.32778 * 119.73728 * 359.97438 * 7 5 4 9 9 C 1.31470 * 121.65353 * 179.70372 * 8 7 5 10 10 C 1.38646 * 120.94018 * 0.58502 * 9 8 7 11 11 C 1.38512 * 119.37556 * 359.44671 * 10 9 8 12 12 C 1.38804 * 118.47673 * 0.25907 * 11 10 9 13 13 Cl 1.73602 * 120.48636 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47691 * 240.00546 * 2 1 3 15 15 C 1.53036 * 109.46496 * 180.02562 * 14 2 1 16 16 C 1.53193 * 109.31782 * 178.61542 * 15 14 2 17 17 N 1.46923 * 108.77560 * 54.62958 * 16 15 14 18 18 C 1.36937 * 120.63024 * 126.41940 * 17 16 15 19 19 H 1.08003 * 119.99787 * 207.66224 * 18 17 16 20 20 C 1.38809 * 119.99826 * 27.66403 * 18 17 16 21 21 N 1.31619 * 120.00609 * 17.36591 * 20 18 17 22 22 Si 1.86804 * 119.99778 * 197.36655 * 20 18 17 23 23 H 1.48502 * 109.46955 * 59.99903 * 22 20 18 24 24 H 1.48503 * 109.47112 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46983 * 299.99991 * 22 20 18 26 26 C 1.46928 * 118.73876 * 306.39528 * 17 16 15 27 27 C 1.53037 * 109.46200 * 59.99261 * 14 2 1 28 28 H 1.09000 * 109.46967 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47824 * 299.99814 * 1 2 3 30 30 H 1.09005 * 109.47192 * 60.00436 * 1 2 3 31 31 H 0.96998 * 120.00013 * 95.00823 * 4 2 1 32 32 H 1.07995 * 119.52715 * 180.30603 * 9 8 7 33 33 H 1.07994 * 120.31125 * 179.72895 * 10 9 8 34 34 H 1.07993 * 120.76560 * 180.27821 * 11 10 9 35 35 H 1.09003 * 109.45652 * 300.02199 * 14 2 1 36 36 H 1.09010 * 109.49647 * 298.56448 * 15 14 2 37 37 H 1.09000 * 109.50100 * 58.65505 * 15 14 2 38 38 H 1.09006 * 109.58113 * 294.84644 * 16 15 14 39 39 H 1.08996 * 109.59017 * 174.42080 * 16 15 14 40 40 H 0.96996 * 120.00286 * 180.02562 * 21 20 18 41 41 H 1.09008 * 109.58558 * 293.82115 * 26 17 16 42 42 H 1.09006 * 109.58813 * 173.40117 * 26 17 16 43 43 H 1.09003 * 109.50292 * 301.34144 * 27 14 2 44 44 H 1.09006 * 109.49545 * 61.44076 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8575 1.1608 2.4119 7 6 2.6401 -0.7164 3.5663 8 7 2.9534 -2.0051 3.5011 9 6 3.4000 -2.6605 4.5496 10 6 3.5501 -2.0285 5.7745 11 6 3.2349 -0.6846 5.8888 12 6 2.7713 -0.0156 4.7645 13 17 2.3615 1.6693 4.8487 14 6 2.0400 -0.7211 -1.2492 15 6 3.5704 -0.7215 -1.2486 16 6 4.0775 -1.4742 -2.4828 17 7 3.4746 -0.8765 -3.6819 18 6 4.2603 -0.4509 -4.7196 19 1 3.9212 0.3493 -5.3607 20 6 5.4925 -1.0480 -4.9474 21 7 5.7656 -2.2190 -4.4119 22 14 6.7635 -0.1896 -6.0139 23 1 7.1070 1.1245 -5.4137 24 1 7.9857 -1.0288 -6.0998 25 1 6.2082 0.0180 -7.3754 26 6 2.0127 -0.7447 -3.7469 27 6 1.5297 0.0005 -2.4986 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 2.2491 -1.6317 1.1526 32 1 3.6492 -3.7072 4.4565 33 1 3.9136 -2.5778 6.6303 34 1 3.3475 -0.1690 6.8310 35 1 1.6763 -1.7486 -1.2493 36 1 3.9345 0.3057 -1.2740 37 1 3.9338 -1.2145 -0.3470 38 1 3.7908 -2.5236 -2.4140 39 1 5.1629 -1.3928 -2.5401 40 1 6.6268 -2.6360 -4.5708 41 1 1.5577 -1.7347 -3.7812 42 1 1.7358 -0.1819 -4.6384 43 1 0.4400 0.0215 -2.4871 44 1 1.9136 1.0206 -2.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997400892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:28 Heat of formation + Delta-G solvation = 16.155028 kcal Electronic energy + Delta-G solvation = -26945.195328 eV Core-core repulsion = 23117.006720 eV Total energy + Delta-G solvation = -3828.188608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.92277 -39.38618 -37.81943 -36.78998 -35.28189 -33.32348 -32.61701 -31.67202 -30.72319 -30.17178 -28.73627 -25.57154 -25.04277 -23.95451 -22.98255 -21.92945 -21.05848 -20.32467 -19.21013 -18.23274 -17.30913 -16.74836 -16.60519 -15.75184 -15.47534 -15.36009 -14.80151 -14.31996 -14.06420 -13.95273 -13.67461 -13.46142 -13.30732 -13.23155 -12.87441 -12.76812 -12.33988 -12.25425 -12.17290 -11.66511 -11.50933 -11.43182 -11.15933 -10.90956 -10.64266 -10.42968 -10.38974 -10.29062 -10.18966 -10.11233 -9.85010 -9.58818 -9.44119 -9.38767 -9.34226 -8.84452 -8.41807 -6.62154 -5.74541 -3.16074 0.17877 0.61458 1.78534 2.58140 3.02515 3.41298 3.46764 3.48703 3.49075 3.85051 4.26636 4.36216 4.41529 4.53732 4.79618 4.94136 5.03019 5.27481 5.36781 5.38780 5.43653 5.45662 5.56175 5.68295 5.79577 5.87799 5.94494 6.04269 6.14552 6.18067 6.33216 6.38312 6.51827 6.63719 6.68694 6.75367 6.83936 6.90103 7.04178 7.20821 7.43381 7.62965 7.70801 7.83493 8.21448 8.49812 9.26216 9.90204 10.46841 11.33786 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.002768 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.422704 B =10112.686969 C =10730.348231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.087 0.913 4 N -0.696 5.696 5 C 0.562 3.438 6 O -0.516 6.516 7 C 0.092 3.908 8 N -0.442 5.442 9 C 0.101 3.899 10 C -0.141 4.141 11 C -0.077 4.077 12 C -0.042 4.042 13 Cl -0.015 7.015 14 C -0.084 4.084 15 C -0.134 4.134 16 C 0.172 3.828 17 N -0.592 5.592 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.146 3.854 27 C -0.125 4.125 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.409 0.591 32 H 0.171 0.829 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.016 0.984 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -0.306 22.576 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.105 0.895 4 N -0.347 5.347 5 C 0.346 3.654 6 O -0.391 6.391 7 C -0.047 4.047 8 N -0.153 5.153 9 C -0.059 4.059 10 C -0.161 4.161 11 C -0.104 4.104 12 C -0.072 4.072 13 Cl 0.014 6.986 14 C -0.103 4.103 15 C -0.173 4.173 16 C 0.046 3.954 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.020 3.980 27 C -0.165 4.165 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.245 0.755 32 H 0.188 0.812 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.909 0.200 21.725 23.121 hybrid contribution 0.997 0.324 0.427 1.132 sum -6.912 0.523 22.152 23.211 Atomic orbital electron populations 1.22205 0.95528 1.01955 1.02293 1.21219 0.93615 0.97647 0.83525 0.89456 1.45949 1.65136 1.14713 1.08877 1.17704 0.78845 0.86258 0.82643 1.90874 1.49580 1.14402 1.84241 1.21234 0.99501 0.90347 0.93638 1.67752 1.08973 1.06673 1.31936 1.22989 0.94347 1.00741 0.87773 1.22402 0.99277 0.94519 0.99895 1.21611 0.96180 0.94616 0.97968 1.22047 1.01024 0.89135 0.95026 1.98438 1.91115 1.10792 1.98224 1.21324 0.97277 0.99059 0.92620 1.22223 0.93582 1.01553 0.99954 1.20756 0.99391 0.92653 0.82562 1.44054 0.99533 1.72028 1.15913 1.19152 0.99213 1.12098 1.07622 0.91800 1.25014 1.00024 0.95327 0.99328 1.70025 1.22728 1.14060 1.47984 0.86390 0.81185 0.79005 0.80328 1.21075 1.21671 1.20926 1.20892 0.86090 0.96400 0.94657 1.22083 0.98706 1.00004 0.95712 0.92635 0.92667 0.91048 0.75485 0.81201 0.83295 0.83153 0.91421 0.92757 0.93418 0.96582 0.89606 0.93675 0.96566 0.92844 0.92668 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.13 37.15 0.34 -1.72 16 2 C 0.14 2.09 2.16 -67.94 -0.15 1.94 16 3 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 4 N -0.70 -9.69 4.35 -54.68 -0.24 -9.93 16 5 C 0.56 8.28 7.77 -12.22 -0.09 8.19 16 6 O -0.52 -8.68 13.61 5.34 0.07 -8.61 16 7 C 0.09 1.16 6.75 -82.98 -0.56 0.60 16 8 N -0.44 -4.92 9.54 -9.77 -0.09 -5.01 16 9 C 0.10 0.78 11.18 -17.56 -0.20 0.58 16 10 C -0.14 -0.84 10.11 -39.33 -0.40 -1.24 16 11 C -0.08 -0.58 9.98 -39.27 -0.39 -0.98 16 12 C -0.04 -0.47 6.37 -38.93 -0.25 -0.71 16 13 Cl -0.02 -0.18 26.04 -51.86 -1.35 -1.53 16 14 C -0.08 -1.36 1.79 -90.59 -0.16 -1.52 16 15 C -0.13 -2.56 5.22 -26.61 -0.14 -2.70 16 16 C 0.17 4.11 5.31 -3.71 -0.02 4.09 16 17 N -0.59 -14.89 2.99 -172.31 -0.52 -15.41 16 18 C -0.25 -6.96 9.59 -15.06 -0.14 -7.11 16 19 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 21 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 22 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.15 3.04 6.52 -3.71 -0.02 3.01 16 27 C -0.13 -2.13 5.04 -26.61 -0.13 -2.26 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 31 H 0.41 5.36 7.71 -40.82 -0.31 5.04 16 32 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 34 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.05 0.84 7.41 -51.93 -0.38 0.46 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.05 0.79 6.36 -51.93 -0.33 0.46 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -32.15 367.24 -9.66 -41.82 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.26 Total: 1.85 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.40 Total: 0.12 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.23 Total: -56.10 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.35 Total: -1.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.15 -9.66 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997400892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.970 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds