Wall clock time and date at job start Tue Mar 31 2020 20:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46728 * 2 1 4 4 N 1.46500 * 109.47222 * 119.99820 * 2 1 3 5 5 C 1.34772 * 120.00129 * 275.00154 * 4 2 1 6 6 O 1.21526 * 120.00559 * 0.02562 * 5 4 2 7 7 C 1.48084 * 119.99947 * 179.97438 * 5 4 2 8 8 N 1.32778 * 119.73728 * 359.97438 * 7 5 4 9 9 C 1.31470 * 121.65353 * 179.70372 * 8 7 5 10 10 C 1.38646 * 120.94018 * 0.58502 * 9 8 7 11 11 C 1.38512 * 119.37556 * 359.44671 * 10 9 8 12 12 C 1.38804 * 118.47673 * 0.25907 * 11 10 9 13 13 Cl 1.73602 * 120.48636 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47691 * 240.00546 * 2 1 3 15 15 C 1.53036 * 109.46496 * 180.02562 * 14 2 1 16 16 C 1.53193 * 109.31782 * 178.61542 * 15 14 2 17 17 N 1.46923 * 108.77560 * 54.62958 * 16 15 14 18 18 C 1.36937 * 120.63024 * 126.41940 * 17 16 15 19 19 H 1.08003 * 119.99787 * 207.66224 * 18 17 16 20 20 C 1.38809 * 119.99826 * 27.66403 * 18 17 16 21 21 N 1.31619 * 120.00609 * 17.36591 * 20 18 17 22 22 Si 1.86804 * 119.99778 * 197.36655 * 20 18 17 23 23 H 1.48502 * 109.46955 * 59.99903 * 22 20 18 24 24 H 1.48503 * 109.47112 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46983 * 299.99991 * 22 20 18 26 26 C 1.46928 * 118.73876 * 306.39528 * 17 16 15 27 27 C 1.53037 * 109.46200 * 59.99261 * 14 2 1 28 28 H 1.09000 * 109.46967 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47824 * 299.99814 * 1 2 3 30 30 H 1.09005 * 109.47192 * 60.00436 * 1 2 3 31 31 H 0.96998 * 120.00013 * 95.00823 * 4 2 1 32 32 H 1.07995 * 119.52715 * 180.30603 * 9 8 7 33 33 H 1.07994 * 120.31125 * 179.72895 * 10 9 8 34 34 H 1.07993 * 120.76560 * 180.27821 * 11 10 9 35 35 H 1.09003 * 109.45652 * 300.02199 * 14 2 1 36 36 H 1.09010 * 109.49647 * 298.56448 * 15 14 2 37 37 H 1.09000 * 109.50100 * 58.65505 * 15 14 2 38 38 H 1.09006 * 109.58113 * 294.84644 * 16 15 14 39 39 H 1.08996 * 109.59017 * 174.42080 * 16 15 14 40 40 H 0.96996 * 120.00286 * 180.02562 * 21 20 18 41 41 H 1.09008 * 109.58558 * 293.82115 * 26 17 16 42 42 H 1.09006 * 109.58813 * 173.40117 * 26 17 16 43 43 H 1.09003 * 109.50292 * 301.34144 * 27 14 2 44 44 H 1.09006 * 109.49545 * 61.44076 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8575 1.1608 2.4119 7 6 2.6401 -0.7164 3.5663 8 7 2.9534 -2.0051 3.5011 9 6 3.4000 -2.6605 4.5496 10 6 3.5501 -2.0285 5.7745 11 6 3.2349 -0.6846 5.8888 12 6 2.7713 -0.0156 4.7645 13 17 2.3615 1.6693 4.8487 14 6 2.0400 -0.7211 -1.2492 15 6 3.5704 -0.7215 -1.2486 16 6 4.0775 -1.4742 -2.4828 17 7 3.4746 -0.8765 -3.6819 18 6 4.2603 -0.4509 -4.7196 19 1 3.9212 0.3493 -5.3607 20 6 5.4925 -1.0480 -4.9474 21 7 5.7656 -2.2190 -4.4119 22 14 6.7635 -0.1896 -6.0139 23 1 7.1070 1.1245 -5.4137 24 1 7.9857 -1.0288 -6.0998 25 1 6.2082 0.0180 -7.3754 26 6 2.0127 -0.7447 -3.7469 27 6 1.5297 0.0005 -2.4986 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 2.2491 -1.6317 1.1526 32 1 3.6492 -3.7072 4.4565 33 1 3.9136 -2.5778 6.6303 34 1 3.3475 -0.1690 6.8310 35 1 1.6763 -1.7486 -1.2493 36 1 3.9345 0.3057 -1.2740 37 1 3.9338 -1.2145 -0.3470 38 1 3.7908 -2.5236 -2.4140 39 1 5.1629 -1.3928 -2.5401 40 1 6.6268 -2.6360 -4.5708 41 1 1.5577 -1.7347 -3.7812 42 1 1.7358 -0.1819 -4.6384 43 1 0.4400 0.0215 -2.4871 44 1 1.9136 1.0206 -2.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997400892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:27 Heat of formation + Delta-G solvation = -3.741122 kcal Electronic energy + Delta-G solvation = -26946.058090 eV Core-core repulsion = 23117.006720 eV Total energy + Delta-G solvation = -3829.051370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.74800 -40.45866 -39.25542 -37.62313 -36.77668 -34.61482 -33.72459 -32.68563 -32.04548 -31.80980 -30.19793 -27.18255 -26.10930 -24.75008 -24.32400 -23.58818 -22.33551 -21.51428 -20.78123 -19.27220 -18.61362 -18.06030 -17.39095 -16.85101 -16.79070 -16.37646 -16.22538 -15.72838 -15.31282 -15.17155 -14.97699 -14.88336 -14.59409 -14.37584 -14.26991 -13.97607 -13.54796 -13.37039 -13.20261 -13.07928 -13.04582 -12.73358 -12.67715 -12.49511 -12.29418 -12.20216 -11.96635 -11.80308 -11.48804 -11.25714 -11.11463 -11.10415 -10.91770 -10.51891 -10.41049 -10.20984 -9.92714 -8.65998 -7.86362 -5.30656 -0.55359 -0.00501 1.00637 1.45470 1.48429 1.54781 1.68994 2.03127 2.51613 2.69633 3.07926 3.27301 3.59845 3.69474 3.71358 3.76160 3.87581 3.98163 4.06556 4.21200 4.37642 4.42261 4.49190 4.57177 4.59385 4.75752 4.79145 4.83402 4.92320 4.93062 5.00021 5.05979 5.11257 5.23127 5.29454 5.38629 5.41097 5.44180 5.49707 5.57719 5.67047 5.78553 6.38992 6.40697 6.68079 7.14599 7.16475 7.89126 8.39950 9.19479 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.002768 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.422704 B =10112.686969 C =10730.348231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.153 3.847 3 H 0.067 0.933 4 N -0.694 5.694 5 C 0.557 3.443 6 O -0.546 6.546 7 C 0.061 3.939 8 N -0.464 5.464 9 C 0.096 3.904 10 C -0.115 4.115 11 C -0.077 4.077 12 C -0.057 4.057 13 Cl -0.036 7.036 14 C -0.073 4.073 15 C -0.118 4.118 16 C 0.180 3.820 17 N -0.612 5.612 18 C -0.264 4.264 19 H 0.064 0.936 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.282 1.282 24 H -0.293 1.293 25 H -0.274 1.274 26 C 0.141 3.859 27 C -0.114 4.114 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.413 0.587 32 H 0.203 0.797 33 H 0.196 0.804 34 H 0.179 0.821 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.000 1.000 39 H 0.048 0.952 40 H 0.249 0.751 41 H 0.019 0.981 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 -1.065 24.544 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 H 0.085 0.915 4 N -0.345 5.345 5 C 0.342 3.658 6 O -0.423 6.423 7 C -0.077 4.077 8 N -0.176 5.176 9 C -0.065 4.065 10 C -0.135 4.135 11 C -0.103 4.103 12 C -0.087 4.087 13 Cl -0.007 7.007 14 C -0.092 4.092 15 C -0.157 4.157 16 C 0.054 3.946 17 N -0.336 5.336 18 C -0.394 4.394 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.579 5.579 22 Si 0.792 3.208 23 H -0.208 1.208 24 H -0.219 1.219 25 H -0.200 1.200 26 C 0.015 3.985 27 C -0.153 4.153 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.250 0.750 32 H 0.219 0.781 33 H 0.213 0.787 34 H 0.196 0.804 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.018 0.982 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.510 -0.553 23.692 25.180 hybrid contribution 1.195 0.442 -0.106 1.278 sum -7.316 -0.111 23.586 24.695 Atomic orbital electron populations 1.22135 0.93624 1.02862 1.02538 1.20993 0.94931 0.96207 0.82954 0.91479 1.45903 1.65169 1.14807 1.08644 1.18126 0.78225 0.86085 0.83387 1.90843 1.50950 1.15651 1.84874 1.20920 1.02198 0.91343 0.93200 1.67703 1.09955 1.06094 1.33816 1.23680 0.93081 1.02044 0.87646 1.22914 0.96314 0.93693 1.00552 1.22026 0.95035 0.95378 0.97811 1.22267 1.02174 0.88348 0.95920 1.98423 1.91453 1.12543 1.98256 1.21193 0.94773 0.99798 0.93400 1.21984 0.95958 0.99696 0.98067 1.20537 0.97296 0.92407 0.84310 1.44332 1.01373 1.72111 1.15757 1.19486 0.99972 1.11958 1.08010 0.91786 1.25755 1.01800 0.95975 1.01101 1.70172 1.22813 1.15362 1.49587 0.85392 0.78604 0.77748 0.79029 1.20818 1.21868 1.19993 1.21079 0.83670 0.97006 0.96708 1.21958 1.00818 0.98707 0.93866 0.91337 0.93296 0.89914 0.74995 0.78064 0.78732 0.80409 0.90497 0.94441 0.92134 0.98198 0.93373 0.94161 0.96333 0.92840 0.88987 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.13 71.98 0.66 -2.98 16 2 C 0.15 4.35 2.16 44.99 0.10 4.45 16 3 H 0.07 2.21 7.58 -2.38 -0.02 2.19 16 4 N -0.69 -19.17 4.35 -445.20 -1.94 -21.11 16 5 C 0.56 16.60 7.77 86.86 0.67 17.27 16 6 O -0.55 -18.87 13.61 -3.80 -0.05 -18.92 16 7 C 0.06 1.52 6.75 41.90 0.28 1.80 16 8 N -0.46 -9.68 9.54 -184.84 -1.76 -11.45 16 9 C 0.10 1.16 11.18 84.84 0.95 2.11 16 10 C -0.12 -0.89 10.11 22.43 0.23 -0.66 16 11 C -0.08 -0.94 9.98 22.47 0.22 -0.71 16 12 C -0.06 -1.21 6.37 22.69 0.14 -1.06 16 13 Cl -0.04 -0.88 26.04 -2.72 -0.07 -0.95 16 14 C -0.07 -2.29 1.79 -10.77 -0.02 -2.31 16 15 C -0.12 -4.58 5.22 30.67 0.16 -4.42 16 16 C 0.18 8.86 5.31 86.36 0.46 9.32 16 17 N -0.61 -31.30 2.99 -699.07 -2.09 -33.40 16 18 C -0.26 -14.89 9.59 84.03 0.81 -14.08 16 19 H 0.06 3.53 7.89 -2.91 -0.02 3.50 16 20 C -0.05 -2.91 4.91 84.86 0.42 -2.49 16 21 N -0.93 -56.04 11.19 21.65 0.24 -55.80 16 22 Si 0.96 45.88 29.59 68.60 2.03 47.91 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 26 C 0.14 5.78 6.52 86.36 0.56 6.34 16 27 C -0.11 -3.71 5.04 30.67 0.15 -3.56 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.76 6.40 -2.38 -0.02 1.75 16 31 H 0.41 10.61 7.71 -92.71 -0.72 9.89 16 32 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.20 -0.25 8.06 -2.91 -0.02 -0.28 16 34 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.06 2.17 7.41 -2.39 -0.02 2.15 16 38 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 39 H 0.05 2.72 6.04 -2.39 -0.01 2.70 16 40 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.05 2.16 7.93 -2.38 -0.02 2.14 16 43 H 0.09 2.36 6.36 -2.39 -0.02 2.34 16 44 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -73.42 367.24 2.46 -70.97 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.31 Total: 13.73 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.80 Total: 9.00 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.55 Total: -121.75 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.05 Total: -18.92 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.07 Total: -0.95 kcal Total: -73.42 2.46 -70.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997400892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.225 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds