Wall clock time and date at job start Tue Mar 31 2020 20:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46886 * 2 1 4 4 N 1.46502 * 109.46902 * 240.00595 * 2 1 3 5 5 C 1.34769 * 120.00373 * 84.99982 * 4 2 1 6 6 O 1.21561 * 120.00288 * 359.97438 * 5 4 2 7 7 C 1.47846 * 120.00297 * 180.02562 * 5 4 2 8 8 C 1.39561 * 120.54987 * 359.71771 * 7 5 4 9 9 N 1.31668 * 120.59669 * 179.73372 * 8 7 5 10 10 C 1.31948 * 121.88735 * 0.57967 * 9 8 7 11 11 C 1.38420 * 121.06428 * 359.68575 * 10 9 8 12 12 Cl 1.73606 * 120.36029 * 179.97438 * 11 10 9 13 13 C 1.38513 * 119.28214 * 0.02562 * 11 10 9 14 14 C 1.52998 * 109.47218 * 120.00069 * 2 1 3 15 15 C 1.53032 * 109.46103 * 299.99806 * 14 2 1 16 16 C 1.53195 * 109.31562 * 181.38445 * 15 14 2 17 17 N 1.46929 * 108.77153 * 305.36666 * 16 15 14 18 18 C 1.36936 * 120.63102 * 233.57735 * 17 16 15 19 19 H 1.08001 * 119.99493 * 27.81488 * 18 17 16 20 20 C 1.38811 * 120.00212 * 207.81031 * 18 17 16 21 21 N 1.31616 * 119.99796 * 25.85089 * 20 18 17 22 22 Si 1.86798 * 119.99834 * 205.57383 * 20 18 17 23 23 H 1.48497 * 109.47151 * 90.00469 * 22 20 18 24 24 H 1.48500 * 109.46743 * 210.00191 * 22 20 18 25 25 H 1.48499 * 109.47212 * 329.99989 * 22 20 18 26 26 C 1.46929 * 118.73997 * 53.86008 * 17 16 15 27 27 C 1.53036 * 109.45571 * 60.06904 * 14 2 1 28 28 H 1.08999 * 109.46858 * 300.00126 * 1 2 3 29 29 H 1.09007 * 109.47006 * 59.99801 * 1 2 3 30 30 H 1.08991 * 109.46917 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99504 * 264.99926 * 4 2 1 32 32 H 1.07997 * 119.70125 * 0.02562 * 8 7 5 33 33 H 1.08006 * 119.46458 * 179.70574 * 10 9 8 34 34 H 1.07999 * 120.86442 * 180.02562 * 13 11 10 35 35 H 1.09003 * 109.44723 * 180.02562 * 14 2 1 36 36 H 1.09001 * 109.50032 * 61.43307 * 15 14 2 37 37 H 1.08998 * 109.50160 * 301.33722 * 15 14 2 38 38 H 1.08992 * 109.58851 * 185.57974 * 16 15 14 39 39 H 1.08997 * 109.58175 * 65.14988 * 16 15 14 40 40 H 0.96996 * 120.00373 * 4.05514 * 21 20 18 41 41 H 1.09003 * 109.58376 * 65.92241 * 26 17 16 42 42 H 1.08993 * 109.58698 * 186.34836 * 26 17 16 43 43 H 1.09004 * 109.50061 * 298.55978 * 27 14 2 44 44 H 1.08995 * 109.50113 * 58.63238 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8575 1.1612 -2.4119 7 6 2.6393 -0.7151 -3.5645 8 6 2.9795 -2.0677 -3.5137 9 7 3.4130 -2.6906 -4.5896 10 6 3.5540 -2.0696 -5.7453 11 6 3.2432 -0.7273 -5.8774 12 17 3.4362 0.0717 -7.4065 13 6 2.7775 -0.0281 -4.7761 14 6 2.0401 -0.7212 1.2492 15 6 1.5299 0.0003 2.4986 16 6 2.0707 -0.7040 3.7469 17 7 1.7086 -2.1265 3.6814 18 6 1.0456 -2.7261 4.7187 19 1 0.4021 -2.1406 5.3586 20 6 1.2006 -4.0864 4.9477 21 7 2.2983 -4.6986 4.5570 22 14 -0.1454 -5.0464 5.8172 23 1 -1.1023 -5.5771 4.8133 24 1 0.4589 -6.1749 6.5699 25 1 -0.8626 -4.1505 6.7596 26 6 2.0770 -2.8949 2.4845 27 6 1.5312 -2.1645 1.2480 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 2.8819 -2.6094 -2.5845 33 1 3.9174 -2.6178 -6.6020 34 1 2.5270 1.0198 -4.8505 35 1 3.1301 -0.7206 1.2490 36 1 0.4402 -0.0216 2.5119 37 1 1.8732 1.0348 2.4870 38 1 1.6319 -0.2559 4.6383 39 1 3.1555 -0.6043 3.7815 40 1 3.0234 -4.1894 4.1624 41 1 3.1624 -2.9701 2.4183 42 1 1.6423 -3.8927 2.5427 43 1 0.4414 -2.1661 1.2731 44 1 1.8751 -2.6708 0.3461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997790270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:45 Heat of formation + Delta-G solvation = 5.266385 kcal Electronic energy + Delta-G solvation = -26675.156488 eV Core-core repulsion = 22846.495713 eV Total energy + Delta-G solvation = -3828.660775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.12816 -39.71418 -38.20083 -37.16243 -35.62514 -33.42602 -32.99489 -31.95485 -30.69772 -30.17487 -28.71568 -25.72397 -25.01489 -24.15020 -23.28200 -22.55072 -21.12530 -20.49165 -18.93852 -18.49397 -17.44555 -17.38336 -17.02512 -15.87663 -15.80620 -15.42006 -14.69036 -14.51052 -14.41500 -14.26799 -13.92145 -13.70933 -13.56766 -13.36684 -13.10753 -12.88113 -12.83813 -12.54770 -12.23698 -11.88532 -11.75801 -11.62698 -11.26407 -10.96873 -10.69799 -10.66399 -10.41135 -10.37301 -10.31013 -10.09565 -10.01765 -9.86335 -9.75995 -9.57303 -9.30886 -9.18841 -8.38340 -6.90807 -6.11664 -3.25180 0.03026 0.47525 1.43710 2.45468 2.85307 3.27866 3.48908 3.49831 3.66896 3.74353 4.10987 4.22438 4.28730 4.52638 4.56795 4.72521 4.90372 5.00095 5.14092 5.25846 5.29025 5.38548 5.44044 5.49589 5.57388 5.70242 5.77466 5.85942 5.93792 5.98993 6.10806 6.17437 6.28191 6.31331 6.43700 6.51119 6.55514 6.68135 6.79148 7.01537 7.13988 7.17807 7.26353 7.91090 7.99038 8.54935 9.09023 9.82212 10.26914 11.18489 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.002317 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.099986 B =12082.976515 C =12922.998421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.086 0.914 4 N -0.712 5.712 5 C 0.563 3.437 6 O -0.533 6.533 7 C -0.171 4.171 8 C 0.140 3.860 9 N -0.467 5.467 10 C 0.135 3.865 11 C -0.099 4.099 12 Cl -0.046 7.046 13 C -0.009 4.009 14 C -0.086 4.086 15 C -0.126 4.126 16 C 0.147 3.853 17 N -0.598 5.598 18 C -0.350 4.350 19 H 0.056 0.944 20 C -0.025 4.025 21 N -0.916 5.916 22 Si 1.067 2.933 23 H -0.293 1.293 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.151 3.849 27 C -0.132 4.132 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.400 0.600 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.015 0.985 40 H 0.269 0.731 41 H 0.016 0.984 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 8.128 -20.829 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.104 0.896 4 N -0.364 5.364 5 C 0.348 3.652 6 O -0.411 6.411 7 C -0.177 4.177 8 C -0.019 4.019 9 N -0.175 5.175 10 C -0.022 4.022 11 C -0.128 4.128 12 Cl -0.017 7.017 13 C -0.036 4.036 14 C -0.105 4.105 15 C -0.165 4.165 16 C 0.021 3.979 17 N -0.322 5.322 18 C -0.479 4.479 19 H 0.074 0.926 20 C -0.227 4.227 21 N -0.556 5.556 22 Si 0.897 3.103 23 H -0.220 1.220 24 H -0.216 1.216 25 H -0.219 1.219 26 C 0.025 3.975 27 C -0.171 4.171 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.237 0.763 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.176 0.824 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.090 6.634 -20.362 21.443 hybrid contribution 0.425 2.067 -0.726 2.232 sum 1.515 8.701 -21.088 22.862 Atomic orbital electron populations 1.22241 0.94995 1.02707 1.02238 1.21176 0.94493 0.96896 0.83145 0.89552 1.46158 1.66285 1.14318 1.09605 1.17881 0.78056 0.86493 0.82779 1.90793 1.50230 1.15259 1.84807 1.21092 1.05444 0.95787 0.95337 1.23214 0.90714 0.90551 0.97403 1.67906 1.12968 1.37899 0.98722 1.23079 0.93144 0.89761 0.96230 1.22029 1.06350 0.95061 0.89337 1.98404 1.95946 1.79601 1.27774 1.21674 0.91146 1.01383 0.89382 1.21328 1.00104 0.96150 0.92959 1.22063 1.01298 0.97734 0.95431 1.20888 0.96025 0.86104 0.94895 1.44127 1.67438 1.05196 1.15482 1.20002 1.22924 0.94929 1.10015 0.92598 1.25835 1.00651 0.95637 1.00569 1.70767 1.03613 1.39981 1.41270 0.83475 0.75158 0.75713 0.75941 1.22049 1.21613 1.21886 1.21019 0.96002 0.96085 0.84437 1.22265 1.01456 0.94439 0.98960 0.90951 0.92797 0.91815 0.76267 0.81460 0.81147 0.82356 0.91300 0.91533 0.92841 0.92572 0.96760 0.92038 0.96650 0.90230 0.91492 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.78 37.16 0.33 -1.74 16 2 C 0.15 1.87 2.40 -67.93 -0.16 1.70 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 N -0.71 -8.03 4.95 -54.75 -0.27 -8.30 16 5 C 0.56 6.83 7.75 -12.33 -0.10 6.73 16 6 O -0.53 -8.10 16.08 5.31 0.09 -8.01 16 7 C -0.17 -1.72 5.89 -104.83 -0.62 -2.34 16 8 C 0.14 1.27 10.71 -17.13 -0.18 1.09 16 9 N -0.47 -4.47 10.35 -12.88 -0.13 -4.61 16 10 C 0.14 1.08 10.97 -17.43 -0.19 0.89 16 11 C -0.10 -0.81 6.34 -39.41 -0.25 -1.06 16 12 Cl -0.05 -0.34 28.99 -51.86 -1.50 -1.84 16 13 C -0.01 -0.08 9.52 -38.83 -0.37 -0.45 16 14 C -0.09 -1.25 2.14 -90.59 -0.19 -1.44 16 15 C -0.13 -1.99 4.96 -26.61 -0.13 -2.12 16 16 C 0.15 2.94 6.51 -3.71 -0.02 2.91 16 17 N -0.60 -14.23 2.85 -172.05 -0.49 -14.72 16 18 C -0.35 -9.45 9.48 -15.06 -0.14 -9.60 16 19 H 0.06 1.53 7.95 -52.49 -0.42 1.12 16 20 C -0.02 -0.69 4.66 -17.43 -0.08 -0.77 16 21 N -0.92 -26.75 12.46 55.49 0.69 -26.05 16 22 Si 1.07 24.79 29.99 -169.99 -5.10 19.69 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.15 3.26 4.72 -3.48 -0.02 3.24 16 27 C -0.13 -2.14 4.83 -26.39 -0.13 -2.27 16 28 H 0.07 0.91 6.46 -51.93 -0.34 0.57 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.82 6.46 -51.93 -0.34 0.48 16 31 H 0.40 3.85 4.91 -40.82 -0.20 3.65 16 32 H 0.17 1.20 6.42 -52.49 -0.34 0.87 16 33 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.16 1.45 7.74 -52.49 -0.41 1.05 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.08 6.51 -51.93 -0.34 0.75 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.27 7.88 6.69 -40.82 -0.27 7.60 16 41 H 0.02 0.34 7.87 -51.93 -0.41 -0.07 16 42 H 0.08 1.97 6.31 -51.93 -0.33 1.64 16 43 H 0.07 1.15 6.51 -51.93 -0.34 0.81 16 44 H 0.04 0.58 6.46 -51.93 -0.34 0.25 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -31.31 363.07 -9.28 -40.59 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.77 Total: 3.01 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.26 Total: -5.23 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.20 Total: -53.68 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.10 Total: 19.69 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.31 -9.28 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997790270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.852 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds