Wall clock time and date at job start Tue Mar 31 2020 20:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46886 * 2 1 4 4 N 1.46502 * 109.46902 * 240.00595 * 2 1 3 5 5 C 1.34769 * 120.00373 * 84.99982 * 4 2 1 6 6 O 1.21561 * 120.00288 * 359.97438 * 5 4 2 7 7 C 1.47846 * 120.00297 * 180.02562 * 5 4 2 8 8 C 1.39561 * 120.54987 * 359.71771 * 7 5 4 9 9 N 1.31668 * 120.59669 * 179.73372 * 8 7 5 10 10 C 1.31948 * 121.88735 * 0.57967 * 9 8 7 11 11 C 1.38420 * 121.06428 * 359.68575 * 10 9 8 12 12 Cl 1.73606 * 120.36029 * 179.97438 * 11 10 9 13 13 C 1.38513 * 119.28214 * 0.02562 * 11 10 9 14 14 C 1.52998 * 109.47218 * 120.00069 * 2 1 3 15 15 C 1.53032 * 109.46103 * 299.99806 * 14 2 1 16 16 C 1.53195 * 109.31562 * 181.38445 * 15 14 2 17 17 N 1.46929 * 108.77153 * 305.36666 * 16 15 14 18 18 C 1.36936 * 120.63102 * 233.57735 * 17 16 15 19 19 H 1.08001 * 119.99493 * 27.81488 * 18 17 16 20 20 C 1.38811 * 120.00212 * 207.81031 * 18 17 16 21 21 N 1.31616 * 119.99796 * 25.85089 * 20 18 17 22 22 Si 1.86798 * 119.99834 * 205.57383 * 20 18 17 23 23 H 1.48497 * 109.47151 * 90.00469 * 22 20 18 24 24 H 1.48500 * 109.46743 * 210.00191 * 22 20 18 25 25 H 1.48499 * 109.47212 * 329.99989 * 22 20 18 26 26 C 1.46929 * 118.73997 * 53.86008 * 17 16 15 27 27 C 1.53036 * 109.45571 * 60.06904 * 14 2 1 28 28 H 1.08999 * 109.46858 * 300.00126 * 1 2 3 29 29 H 1.09007 * 109.47006 * 59.99801 * 1 2 3 30 30 H 1.08991 * 109.46917 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99504 * 264.99926 * 4 2 1 32 32 H 1.07997 * 119.70125 * 0.02562 * 8 7 5 33 33 H 1.08006 * 119.46458 * 179.70574 * 10 9 8 34 34 H 1.07999 * 120.86442 * 180.02562 * 13 11 10 35 35 H 1.09003 * 109.44723 * 180.02562 * 14 2 1 36 36 H 1.09001 * 109.50032 * 61.43307 * 15 14 2 37 37 H 1.08998 * 109.50160 * 301.33722 * 15 14 2 38 38 H 1.08992 * 109.58851 * 185.57974 * 16 15 14 39 39 H 1.08997 * 109.58175 * 65.14988 * 16 15 14 40 40 H 0.96996 * 120.00373 * 4.05514 * 21 20 18 41 41 H 1.09003 * 109.58376 * 65.92241 * 26 17 16 42 42 H 1.08993 * 109.58698 * 186.34836 * 26 17 16 43 43 H 1.09004 * 109.50061 * 298.55978 * 27 14 2 44 44 H 1.08995 * 109.50113 * 58.63238 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8575 1.1612 -2.4119 7 6 2.6393 -0.7151 -3.5645 8 6 2.9795 -2.0677 -3.5137 9 7 3.4130 -2.6906 -4.5896 10 6 3.5540 -2.0696 -5.7453 11 6 3.2432 -0.7273 -5.8774 12 17 3.4362 0.0717 -7.4065 13 6 2.7775 -0.0281 -4.7761 14 6 2.0401 -0.7212 1.2492 15 6 1.5299 0.0003 2.4986 16 6 2.0707 -0.7040 3.7469 17 7 1.7086 -2.1265 3.6814 18 6 1.0456 -2.7261 4.7187 19 1 0.4021 -2.1406 5.3586 20 6 1.2006 -4.0864 4.9477 21 7 2.2983 -4.6986 4.5570 22 14 -0.1454 -5.0464 5.8172 23 1 -1.1023 -5.5771 4.8133 24 1 0.4589 -6.1749 6.5699 25 1 -0.8626 -4.1505 6.7596 26 6 2.0770 -2.8949 2.4845 27 6 1.5312 -2.1645 1.2480 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 2.8819 -2.6094 -2.5845 33 1 3.9174 -2.6178 -6.6020 34 1 2.5270 1.0198 -4.8505 35 1 3.1301 -0.7206 1.2490 36 1 0.4402 -0.0216 2.5119 37 1 1.8732 1.0348 2.4870 38 1 1.6319 -0.2559 4.6383 39 1 3.1555 -0.6043 3.7815 40 1 3.0234 -4.1894 4.1624 41 1 3.1624 -2.9701 2.4183 42 1 1.6423 -3.8927 2.5427 43 1 0.4414 -2.1661 1.2731 44 1 1.8751 -2.6708 0.3461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997790270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:43 Heat of formation + Delta-G solvation = -13.424270 kcal Electronic energy + Delta-G solvation = -26675.966975 eV Core-core repulsion = 22846.495713 eV Total energy + Delta-G solvation = -3829.471262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.92625 -40.68545 -39.50677 -37.77490 -37.05532 -34.81079 -33.80650 -33.06583 -31.94588 -31.66861 -30.07468 -27.09068 -26.17030 -24.91686 -24.63349 -24.00531 -22.43390 -21.63780 -20.30776 -19.53712 -19.10847 -18.18460 -17.78269 -16.84119 -16.62267 -16.33664 -16.20316 -16.00296 -15.61353 -15.37205 -15.26897 -15.14667 -14.84420 -14.42885 -14.32023 -14.07580 -13.76222 -13.56844 -13.41648 -13.18260 -12.93350 -12.65710 -12.63590 -12.43829 -12.35763 -11.91513 -11.89213 -11.67939 -11.61282 -11.52160 -11.26183 -11.11057 -10.98547 -10.70407 -10.43928 -10.30379 -10.11616 -8.88616 -8.23745 -5.35931 -0.67222 -0.21103 0.81074 1.59895 1.61371 1.66421 1.83898 1.93949 2.53486 2.67108 3.09212 3.23511 3.47208 3.49107 3.56099 3.57701 3.72409 3.80942 3.83765 3.95834 4.12185 4.30290 4.37141 4.47783 4.53426 4.58047 4.63750 4.69573 4.69771 4.81871 4.90934 4.95925 5.07710 5.12924 5.13943 5.16038 5.26100 5.28062 5.30660 5.41455 5.63853 5.87985 6.34287 6.42638 6.52315 6.99596 7.10342 7.82273 8.26237 9.02760 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.002317 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.099986 B =12082.976515 C =12922.998421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.084 0.916 4 N -0.705 5.705 5 C 0.567 3.433 6 O -0.567 6.567 7 C -0.182 4.182 8 C 0.143 3.857 9 N -0.484 5.484 10 C 0.142 3.858 11 C -0.099 4.099 12 Cl -0.037 7.037 13 C -0.013 4.013 14 C -0.076 4.076 15 C -0.115 4.115 16 C 0.142 3.858 17 N -0.618 5.618 18 C -0.353 4.353 19 H 0.048 0.952 20 C -0.076 4.076 21 N -0.943 5.943 22 Si 1.114 2.886 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.276 1.276 26 C 0.154 3.846 27 C -0.118 4.118 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.409 0.591 32 H 0.185 0.815 33 H 0.197 0.803 34 H 0.157 0.843 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.012 0.988 40 H 0.255 0.745 41 H 0.004 0.996 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 8.495 -22.476 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.102 0.898 4 N -0.357 5.357 5 C 0.354 3.646 6 O -0.447 6.447 7 C -0.187 4.187 8 C -0.015 4.015 9 N -0.192 5.192 10 C -0.015 4.015 11 C -0.127 4.127 12 Cl -0.008 7.008 13 C -0.040 4.040 14 C -0.095 4.095 15 C -0.155 4.155 16 C 0.016 3.984 17 N -0.343 5.343 18 C -0.482 4.482 19 H 0.065 0.935 20 C -0.272 4.272 21 N -0.585 5.585 22 Si 0.939 3.061 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.201 1.201 26 C 0.029 3.971 27 C -0.157 4.157 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.248 0.752 32 H 0.201 0.799 33 H 0.214 0.786 34 H 0.174 0.826 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.030 0.970 40 H 0.065 0.935 41 H 0.022 0.978 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.677 7.019 -22.028 23.129 hybrid contribution 0.619 2.005 -0.252 2.114 sum 1.296 9.025 -22.280 24.074 Atomic orbital electron populations 1.22195 0.94701 1.02610 1.02237 1.20929 0.94531 0.96486 0.82671 0.89816 1.46037 1.65960 1.14674 1.09057 1.18094 0.77262 0.86046 0.83240 1.90777 1.51834 1.16737 1.85347 1.20906 1.06892 0.96207 0.94713 1.23444 0.89877 0.90143 0.98047 1.67979 1.13671 1.38274 0.99269 1.23514 0.91777 0.89741 0.96516 1.22026 1.06117 0.95202 0.89404 1.98411 1.95868 1.79493 1.27029 1.21743 0.91127 1.01457 0.89680 1.21187 1.00080 0.94853 0.93348 1.21926 1.01043 0.98739 0.93753 1.21037 0.95976 0.84460 0.96883 1.44388 1.67603 1.06666 1.15594 1.20217 1.22364 0.95202 1.10460 0.93456 1.27088 1.01748 0.97009 1.01381 1.70883 1.04266 1.39886 1.43471 0.82841 0.73110 0.74606 0.75496 1.20900 1.22239 1.20108 1.20924 0.95164 0.94958 0.86103 1.22084 1.00913 0.95267 0.97443 0.90791 0.92987 0.91917 0.75190 0.79859 0.78616 0.82586 0.91147 0.91683 0.90149 0.93419 0.96992 0.93529 0.97805 0.93813 0.91979 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.78 71.98 0.63 -3.07 16 2 C 0.16 3.67 2.40 44.99 0.11 3.78 16 3 H 0.08 2.09 7.58 -2.38 -0.02 2.07 16 4 N -0.71 -14.39 4.95 -445.40 -2.21 -16.59 16 5 C 0.57 12.88 7.75 86.79 0.67 13.56 16 6 O -0.57 -16.62 16.08 -3.91 -0.06 -16.68 16 7 C -0.18 -3.38 5.89 -20.00 -0.12 -3.50 16 8 C 0.14 2.32 10.71 85.04 0.91 3.23 16 9 N -0.48 -8.22 10.35 -194.67 -2.01 -10.24 16 10 C 0.14 1.94 10.97 84.72 0.93 2.87 16 11 C -0.10 -1.44 6.34 22.38 0.14 -1.30 16 12 Cl -0.04 -0.47 28.99 -2.72 -0.08 -0.55 16 13 C -0.01 -0.23 9.52 22.75 0.22 -0.01 16 14 C -0.08 -2.04 2.14 -10.77 -0.02 -2.06 16 15 C -0.12 -3.44 4.96 30.67 0.15 -3.29 16 16 C 0.14 5.61 6.51 86.36 0.56 6.17 16 17 N -0.62 -29.67 2.85 -698.24 -1.99 -31.66 16 18 C -0.35 -19.32 9.48 84.03 0.80 -18.52 16 19 H 0.05 2.63 7.95 -2.91 -0.02 2.60 16 20 C -0.08 -4.24 4.66 84.86 0.40 -3.84 16 21 N -0.94 -56.40 12.46 21.65 0.27 -56.13 16 22 Si 1.11 50.32 29.99 68.60 2.06 52.38 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.15 6.73 4.72 86.51 0.41 7.14 16 27 C -0.12 -3.66 4.83 30.82 0.15 -3.51 16 28 H 0.07 1.70 6.46 -2.39 -0.02 1.68 16 29 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.06 1.47 6.46 -2.39 -0.02 1.45 16 31 H 0.41 6.79 4.91 -92.71 -0.46 6.34 16 32 H 0.18 2.19 6.42 -2.91 -0.02 2.17 16 33 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.16 2.75 7.74 -2.91 -0.02 2.73 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.99 6.51 -2.39 -0.02 1.98 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.92 7.93 -2.39 -0.02 1.91 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.25 15.47 6.69 -92.71 -0.62 14.85 16 41 H 0.00 0.18 7.87 -2.39 -0.02 0.16 16 42 H 0.04 2.21 6.31 -2.39 -0.02 2.20 16 43 H 0.06 2.02 6.51 -2.38 -0.02 2.01 16 44 H 0.08 1.85 6.46 -2.39 -0.02 1.83 16 Total: -1.00 -68.58 363.07 2.65 -65.94 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.73 Total: 15.90 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.93 Total: -2.37 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -5.94 Total: -114.62 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.06 Total: -16.68 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.06 Total: 52.38 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -68.58 2.65 -65.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997790270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.514 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds