Wall clock time and date at job start Tue Mar 31 2020 21:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47038 * 2 1 4 4 N 1.46505 * 109.46869 * 119.99651 * 2 1 3 5 5 C 1.34773 * 119.99903 * 274.99976 * 4 2 1 6 6 O 1.21520 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.48073 * 119.99643 * 179.97438 * 5 4 2 8 8 C 1.39872 * 120.93332 * 0.02562 * 7 5 4 9 9 C 1.38082 * 119.02106 * 179.97438 * 8 7 5 10 10 N 1.31854 * 120.94024 * 359.97438 * 9 8 7 11 11 C 1.31761 * 122.07181 * 0.02562 * 10 9 8 12 12 C 1.38360 * 120.86697 * 359.97438 * 11 10 9 13 13 Cl 1.73601 * 120.51659 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47522 * 239.99950 * 2 1 3 15 15 H 1.09003 * 109.49477 * 300.06941 * 14 2 1 16 16 C 1.53039 * 109.49733 * 60.16076 * 14 2 1 17 17 C 1.53036 * 109.53714 * 181.32112 * 16 14 2 18 18 C 1.53192 * 109.31159 * 298.63275 * 17 16 14 19 19 N 1.46930 * 108.77670 * 54.63567 * 18 17 16 20 20 C 1.36938 * 120.62975 * 126.36874 * 19 18 17 21 21 H 1.08001 * 119.99716 * 208.02871 * 20 19 18 22 22 C 1.38812 * 119.99955 * 28.02332 * 20 19 18 23 23 N 1.31624 * 119.99866 * 17.52375 * 22 20 19 24 24 Si 1.86800 * 119.99788 * 197.52311 * 22 20 19 25 25 H 1.48501 * 109.46909 * 94.06970 * 24 22 20 26 26 H 1.48501 * 109.46719 * 214.06907 * 24 22 20 27 27 H 1.48490 * 109.47255 * 334.07032 * 24 22 20 28 28 C 1.46923 * 118.73609 * 306.39632 * 19 18 17 29 29 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47536 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.46718 * 60.00329 * 1 2 3 32 32 H 0.96998 * 119.99411 * 95.00147 * 4 2 1 33 33 H 1.07994 * 120.49346 * 359.97438 * 8 7 5 34 34 H 1.07993 * 119.53630 * 179.97438 * 9 8 7 35 35 H 1.07988 * 119.56362 * 179.72623 * 11 10 9 36 36 H 1.09007 * 109.45919 * 301.33957 * 16 14 2 37 37 H 1.08998 * 109.45914 * 61.29445 * 16 14 2 38 38 H 1.09003 * 109.49894 * 178.68521 * 17 16 14 39 39 H 1.08997 * 109.52762 * 58.60574 * 17 16 14 40 40 H 1.09004 * 109.58568 * 294.85303 * 18 17 16 41 41 H 1.09005 * 109.70690 * 174.49683 * 18 17 16 42 42 H 0.96998 * 119.99248 * 179.97438 * 23 22 20 43 43 H 1.09004 * 109.58901 * 293.81373 * 28 19 18 44 44 H 1.08999 * 109.58571 * 173.39476 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8576 1.1608 2.4118 7 6 2.6400 -0.7163 3.5663 8 6 2.9782 -2.0729 3.5256 9 6 3.4344 -2.6844 4.6766 10 7 3.5534 -2.0080 5.8021 11 6 3.2464 -0.7293 5.8857 12 6 2.7816 -0.0372 4.7815 13 17 2.3793 1.6472 4.9021 14 6 2.0401 -0.7212 -1.2492 15 1 1.6760 -1.7487 -1.2502 16 6 1.5337 0.0020 -2.4992 17 6 2.0160 -0.7376 -3.7491 18 6 3.5477 -0.7380 -3.7781 19 7 4.0444 -1.3005 -2.5148 20 6 4.9303 -2.3447 -2.5165 21 1 4.9525 -3.0353 -1.6865 22 6 5.7995 -2.5156 -3.5852 23 7 6.0252 -1.5198 -4.4157 24 14 6.6489 -4.1590 -3.8446 25 1 5.8551 -4.9824 -4.7918 26 1 8.0060 -3.9320 -4.4031 27 1 6.7608 -4.8689 -2.5452 28 6 3.5720 -0.7216 -1.2498 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1527 33 1 2.8839 -2.6339 2.6077 34 1 3.6974 -3.7316 4.6547 35 1 3.3552 -0.2159 6.8295 36 1 0.4439 0.0252 -2.4888 37 1 1.9183 1.0219 -2.5095 38 1 1.6356 -0.2353 -4.6386 39 1 1.6522 -1.7648 -3.7278 40 1 3.9113 0.2833 -3.8913 41 1 3.8994 -1.3457 -4.6119 42 1 6.6329 -1.6392 -5.1623 43 1 3.9376 0.3011 -1.1567 44 1 3.9376 -1.3198 -0.4151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025539505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:15 Heat of formation + Delta-G solvation = 14.230470 kcal Electronic energy + Delta-G solvation = -27127.003619 eV Core-core repulsion = 23298.731556 eV Total energy + Delta-G solvation = -3828.272063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -40.91510 -39.50874 -37.93059 -36.74962 -35.32499 -33.50815 -32.74731 -31.43171 -30.83976 -30.46204 -28.54264 -25.57469 -25.09376 -23.94941 -23.24603 -22.00222 -21.06927 -20.47647 -19.31483 -18.30167 -17.15481 -16.71953 -16.47291 -15.79196 -15.61154 -15.24921 -14.87425 -14.44218 -14.38025 -14.25871 -13.82673 -13.64294 -13.44202 -13.23887 -12.71486 -12.53607 -12.50604 -12.29336 -12.16885 -11.85527 -11.62353 -11.34461 -11.16171 -11.00803 -10.72176 -10.46622 -10.44909 -10.23689 -10.20340 -10.19085 -9.95410 -9.69323 -9.53236 -9.45238 -9.30434 -9.00128 -8.50396 -6.71382 -5.83094 -3.26089 0.27375 0.54108 1.81534 2.71045 2.94928 3.33502 3.40389 3.42054 3.42829 3.99484 4.23314 4.30396 4.43567 4.45263 4.77241 4.91066 5.13804 5.19600 5.31596 5.32057 5.35817 5.42864 5.50289 5.54691 5.70673 5.75411 5.96142 6.00686 6.02443 6.06963 6.23664 6.29510 6.37598 6.45447 6.56753 6.66252 6.74773 6.82620 6.92779 7.35752 7.38371 7.41799 7.63504 7.74218 8.08381 8.40269 9.16555 9.80173 10.37188 11.25158 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.003294 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.466850 B = 8498.305677 C =10000.414510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.089 0.911 4 N -0.709 5.709 5 C 0.552 3.448 6 O -0.511 6.511 7 C -0.079 4.079 8 C -0.127 4.127 9 C 0.098 3.902 10 N -0.456 5.456 11 C 0.107 3.893 12 C -0.045 4.045 13 Cl -0.017 7.017 14 C -0.111 4.111 15 H 0.072 0.928 16 C -0.101 4.101 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.155 3.845 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.400 0.600 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.017 0.983 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.017 0.983 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 0.479 15.612 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.337 3.663 6 O -0.386 6.386 7 C -0.091 4.091 8 C -0.148 4.148 9 C -0.058 4.058 10 N -0.166 5.166 11 C -0.051 4.051 12 C -0.075 4.075 13 Cl 0.012 6.988 14 C -0.132 4.132 15 H 0.090 0.910 16 C -0.139 4.139 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.544 5.544 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.029 3.971 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.168 0.832 34 H 0.187 0.813 35 H 0.187 0.813 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.203 1.069 16.221 19.193 hybrid contribution 0.327 -0.791 -1.027 1.337 sum -9.876 0.278 15.194 18.123 Atomic orbital electron populations 1.22202 0.95467 1.01952 1.02336 1.21122 0.93588 0.97638 0.83205 0.89291 1.46005 1.66422 1.14175 1.09418 1.17936 0.78822 0.86714 0.82838 1.90857 1.48754 1.14583 1.84405 1.20392 1.00273 0.94316 0.94117 1.22472 0.97829 0.93396 1.01092 1.22893 0.94748 1.00787 0.87359 1.67700 1.13326 1.07580 1.27968 1.22860 0.94726 0.90050 0.97485 1.22278 1.01237 0.89017 0.95016 1.98433 1.91349 1.11043 1.97954 1.21984 0.99604 0.99198 0.92410 0.90990 1.21439 0.98777 0.99059 0.94602 1.22168 1.00833 0.99339 0.95740 1.20794 0.87486 0.97235 0.90185 1.44037 1.49961 1.37872 0.99449 1.19158 1.11348 1.01966 1.05988 0.91774 1.25039 0.97149 0.97404 0.99904 1.70048 1.37628 1.29140 1.17615 0.86296 0.78700 0.83858 0.78027 1.21460 1.21766 1.20411 1.20855 0.89814 0.96404 0.90059 0.92643 0.92566 0.91115 0.76481 0.83220 0.81255 0.81260 0.93072 0.92537 0.93204 0.92767 0.96501 0.89619 0.93608 0.96519 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.14 37.16 0.34 -1.55 16 2 C 0.15 2.00 2.16 -67.93 -0.15 1.85 16 3 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 4 N -0.71 -8.70 4.43 -54.67 -0.24 -8.94 16 5 C 0.55 7.46 7.76 -12.23 -0.09 7.36 16 6 O -0.51 -8.29 13.83 5.35 0.07 -8.21 16 7 C -0.08 -0.92 5.91 -104.62 -0.62 -1.54 16 8 C -0.13 -1.15 9.61 -39.03 -0.38 -1.52 16 9 C 0.10 0.85 11.17 -17.60 -0.20 0.65 16 10 N -0.46 -4.64 10.33 -13.28 -0.14 -4.78 16 11 C 0.11 1.05 10.99 -17.54 -0.19 0.85 16 12 C -0.05 -0.52 6.38 -38.91 -0.25 -0.76 16 13 Cl -0.02 -0.21 26.24 -51.86 -1.36 -1.57 16 14 C -0.11 -1.71 1.97 -90.50 -0.18 -1.89 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.10 -1.57 4.86 -26.69 -0.13 -1.70 16 17 C -0.14 -2.56 6.08 -26.61 -0.16 -2.73 16 18 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 19 N -0.59 -14.16 2.99 -172.32 -0.52 -14.68 16 20 C -0.26 -6.73 9.58 -15.06 -0.14 -6.87 16 21 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 22 C 0.00 0.11 4.90 -17.43 -0.09 0.02 16 23 N -0.90 -25.70 11.22 55.49 0.62 -25.07 16 24 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.16 3.05 5.55 -3.72 -0.02 3.03 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.79 6.40 -51.93 -0.33 0.45 16 32 H 0.40 4.15 6.56 -40.82 -0.27 3.89 16 33 H 0.15 1.02 6.54 -52.49 -0.34 0.67 16 34 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.05 0.68 6.37 -51.93 -0.33 0.35 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.94 7.44 -51.93 -0.39 0.55 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -31.31 365.71 -9.50 -40.81 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.15 Total: 1.77 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.27 Total: -0.91 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.27 Total: -53.47 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.21 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.36 Total: -1.57 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.31 -9.50 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025539505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.040 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds