Wall clock time and date at job start Tue Mar 31 2020 21:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47038 * 2 1 4 4 N 1.46505 * 109.46869 * 119.99651 * 2 1 3 5 5 C 1.34773 * 119.99903 * 274.99976 * 4 2 1 6 6 O 1.21520 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.48073 * 119.99643 * 179.97438 * 5 4 2 8 8 C 1.39872 * 120.93332 * 0.02562 * 7 5 4 9 9 C 1.38082 * 119.02106 * 179.97438 * 8 7 5 10 10 N 1.31854 * 120.94024 * 359.97438 * 9 8 7 11 11 C 1.31761 * 122.07181 * 0.02562 * 10 9 8 12 12 C 1.38360 * 120.86697 * 359.97438 * 11 10 9 13 13 Cl 1.73601 * 120.51659 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47522 * 239.99950 * 2 1 3 15 15 H 1.09003 * 109.49477 * 300.06941 * 14 2 1 16 16 C 1.53039 * 109.49733 * 60.16076 * 14 2 1 17 17 C 1.53036 * 109.53714 * 181.32112 * 16 14 2 18 18 C 1.53192 * 109.31159 * 298.63275 * 17 16 14 19 19 N 1.46930 * 108.77670 * 54.63567 * 18 17 16 20 20 C 1.36938 * 120.62975 * 126.36874 * 19 18 17 21 21 H 1.08001 * 119.99716 * 208.02871 * 20 19 18 22 22 C 1.38812 * 119.99955 * 28.02332 * 20 19 18 23 23 N 1.31624 * 119.99866 * 17.52375 * 22 20 19 24 24 Si 1.86800 * 119.99788 * 197.52311 * 22 20 19 25 25 H 1.48501 * 109.46909 * 94.06970 * 24 22 20 26 26 H 1.48501 * 109.46719 * 214.06907 * 24 22 20 27 27 H 1.48490 * 109.47255 * 334.07032 * 24 22 20 28 28 C 1.46923 * 118.73609 * 306.39632 * 19 18 17 29 29 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47536 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.46718 * 60.00329 * 1 2 3 32 32 H 0.96998 * 119.99411 * 95.00147 * 4 2 1 33 33 H 1.07994 * 120.49346 * 359.97438 * 8 7 5 34 34 H 1.07993 * 119.53630 * 179.97438 * 9 8 7 35 35 H 1.07988 * 119.56362 * 179.72623 * 11 10 9 36 36 H 1.09007 * 109.45919 * 301.33957 * 16 14 2 37 37 H 1.08998 * 109.45914 * 61.29445 * 16 14 2 38 38 H 1.09003 * 109.49894 * 178.68521 * 17 16 14 39 39 H 1.08997 * 109.52762 * 58.60574 * 17 16 14 40 40 H 1.09004 * 109.58568 * 294.85303 * 18 17 16 41 41 H 1.09005 * 109.70690 * 174.49683 * 18 17 16 42 42 H 0.96998 * 119.99248 * 179.97438 * 23 22 20 43 43 H 1.09004 * 109.58901 * 293.81373 * 28 19 18 44 44 H 1.08999 * 109.58571 * 173.39476 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8576 1.1608 2.4118 7 6 2.6400 -0.7163 3.5663 8 6 2.9782 -2.0729 3.5256 9 6 3.4344 -2.6844 4.6766 10 7 3.5534 -2.0080 5.8021 11 6 3.2464 -0.7293 5.8857 12 6 2.7816 -0.0372 4.7815 13 17 2.3793 1.6472 4.9021 14 6 2.0401 -0.7212 -1.2492 15 1 1.6760 -1.7487 -1.2502 16 6 1.5337 0.0020 -2.4992 17 6 2.0160 -0.7376 -3.7491 18 6 3.5477 -0.7380 -3.7781 19 7 4.0444 -1.3005 -2.5148 20 6 4.9303 -2.3447 -2.5165 21 1 4.9525 -3.0353 -1.6865 22 6 5.7995 -2.5156 -3.5852 23 7 6.0252 -1.5198 -4.4157 24 14 6.6489 -4.1590 -3.8446 25 1 5.8551 -4.9824 -4.7918 26 1 8.0060 -3.9320 -4.4031 27 1 6.7608 -4.8689 -2.5452 28 6 3.5720 -0.7216 -1.2498 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1527 33 1 2.8839 -2.6339 2.6077 34 1 3.6974 -3.7316 4.6547 35 1 3.3552 -0.2159 6.8295 36 1 0.4439 0.0252 -2.4888 37 1 1.9183 1.0219 -2.5095 38 1 1.6356 -0.2353 -4.6386 39 1 1.6522 -1.7648 -3.7278 40 1 3.9113 0.2833 -3.8913 41 1 3.8994 -1.3457 -4.6119 42 1 6.6329 -1.6392 -5.1623 43 1 3.9376 0.3011 -1.1567 44 1 3.9376 -1.3198 -0.4151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025539505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:09 Heat of formation + Delta-G solvation = -4.638786 kcal Electronic energy + Delta-G solvation = -27127.821852 eV Core-core repulsion = 23298.731556 eV Total energy + Delta-G solvation = -3829.090295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -41.78254 -40.52866 -39.31182 -37.62377 -36.71296 -34.82617 -33.94822 -32.47005 -32.18792 -31.84952 -29.88141 -27.16720 -26.26963 -24.86426 -24.37075 -23.60338 -22.32486 -21.59237 -20.76467 -19.29561 -18.62751 -17.95913 -17.27404 -16.90204 -16.75781 -16.46858 -16.21108 -15.84545 -15.48430 -15.15018 -15.05259 -14.94547 -14.78501 -14.66180 -14.11708 -14.01335 -13.69633 -13.27673 -13.24324 -13.03294 -12.98580 -12.77495 -12.62858 -12.27570 -12.25818 -12.18370 -11.93723 -11.76073 -11.50603 -11.35027 -11.20071 -11.04996 -11.02290 -10.52374 -10.46181 -10.13617 -10.02422 -8.66941 -7.85703 -5.31719 -0.55944 -0.17861 0.98053 1.48265 1.49568 1.58365 1.77111 1.97161 2.52041 2.62885 3.29037 3.34054 3.40305 3.52315 3.57519 3.70021 3.93528 4.01376 4.06010 4.08318 4.35867 4.43596 4.48858 4.50944 4.58229 4.65879 4.74115 4.78275 4.86115 4.88571 4.96159 5.06053 5.12075 5.24007 5.27962 5.34045 5.35172 5.46225 5.51763 5.59258 5.68411 5.79486 6.39111 6.43768 6.67023 7.08967 7.15886 7.87336 8.39805 9.20610 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.003294 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.466850 B = 8498.305677 C =10000.414510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 H 0.066 0.934 4 N -0.702 5.702 5 C 0.550 3.450 6 O -0.544 6.544 7 C -0.097 4.097 8 C -0.120 4.120 9 C 0.103 3.897 10 N -0.469 5.469 11 C 0.109 3.891 12 C -0.060 4.060 13 Cl -0.033 7.033 14 C -0.093 4.093 15 H 0.083 0.917 16 C -0.098 4.098 17 C -0.129 4.129 18 C 0.172 3.828 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.073 0.927 22 C -0.052 4.052 23 N -0.938 5.938 24 Si 0.965 3.035 25 H -0.286 1.286 26 H -0.301 1.301 27 H -0.263 1.263 28 C 0.155 3.845 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.411 0.589 33 H 0.174 0.826 34 H 0.203 0.797 35 H 0.190 0.810 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.057 0.943 40 H -0.013 1.013 41 H 0.051 0.949 42 H 0.248 0.752 43 H -0.006 1.006 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 -1.661 16.813 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 H 0.085 0.915 4 N -0.354 5.354 5 C 0.336 3.664 6 O -0.422 6.422 7 C -0.109 4.109 8 C -0.141 4.141 9 C -0.053 4.053 10 N -0.179 5.179 11 C -0.049 4.049 12 C -0.091 4.091 13 Cl -0.004 7.004 14 C -0.114 4.114 15 H 0.102 0.898 16 C -0.136 4.136 17 C -0.168 4.168 18 C 0.047 3.953 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.091 0.909 22 C -0.247 4.247 23 N -0.584 5.584 24 Si 0.794 3.206 25 H -0.213 1.213 26 H -0.228 1.228 27 H -0.187 1.187 28 C 0.029 3.971 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.248 0.752 33 H 0.191 0.809 34 H 0.220 0.780 35 H 0.207 0.793 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.005 0.995 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.012 0.988 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.662 -1.091 17.453 21.019 hybrid contribution 0.824 -0.127 -1.364 1.599 sum -10.838 -1.218 16.090 19.438 Atomic orbital electron populations 1.22126 0.93418 1.03047 1.02498 1.20920 0.94974 0.96184 0.82665 0.91530 1.45913 1.66079 1.14611 1.08807 1.18239 0.78230 0.86417 0.83497 1.90839 1.50279 1.16063 1.84993 1.20385 1.01644 0.95496 0.93338 1.22740 0.96712 0.92271 1.02327 1.23473 0.93239 1.02070 0.86554 1.67789 1.13657 1.07630 1.28804 1.23150 0.93883 0.90064 0.97771 1.22432 1.02437 0.88471 0.95717 1.98422 1.91607 1.12369 1.98002 1.21750 0.95990 1.00154 0.93484 0.89825 1.21443 1.00939 0.98074 0.93133 1.21992 0.96524 1.00274 0.98048 1.20631 0.91050 0.94584 0.89069 1.44316 1.50008 1.37809 1.00966 1.19576 1.11016 1.02502 1.05901 0.90886 1.25814 0.98428 1.00399 1.00108 1.70217 1.38791 1.31137 1.18266 0.85277 0.76926 0.80083 0.78329 1.21303 1.22776 1.18703 1.20971 0.92857 0.94792 0.88478 0.91004 0.93298 0.90101 0.75196 0.80865 0.77994 0.79347 0.89361 0.93354 0.91413 0.92410 0.99493 0.93087 0.94297 0.98833 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.14 71.98 0.66 -2.48 16 2 C 0.16 3.95 2.16 44.99 0.10 4.04 16 3 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 4 N -0.70 -15.99 4.43 -445.18 -1.97 -17.96 16 5 C 0.55 14.40 7.76 86.85 0.67 15.07 16 6 O -0.54 -17.70 13.83 -3.78 -0.05 -17.76 16 7 C -0.10 -2.12 5.91 -19.86 -0.12 -2.24 16 8 C -0.12 -1.85 9.61 22.63 0.22 -1.63 16 9 C 0.10 1.46 11.17 84.65 0.95 2.40 16 10 N -0.47 -8.47 10.33 -195.91 -2.02 -10.50 16 11 C 0.11 1.97 10.99 84.73 0.93 2.90 16 12 C -0.06 -1.33 6.38 22.71 0.14 -1.19 16 13 Cl -0.03 -0.81 26.24 -2.72 -0.07 -0.88 16 14 C -0.09 -2.68 1.97 -10.72 -0.02 -2.70 16 15 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 16 C -0.10 -2.83 4.86 30.62 0.15 -2.68 16 17 C -0.13 -4.50 6.08 30.67 0.19 -4.32 16 18 C 0.17 8.15 5.31 86.36 0.46 8.61 16 19 N -0.61 -29.27 2.99 -699.09 -2.09 -31.37 16 20 C -0.26 -13.66 9.58 84.03 0.81 -12.86 16 21 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 22 C -0.05 -2.85 4.90 84.86 0.42 -2.44 16 23 N -0.94 -55.24 11.22 21.65 0.24 -55.00 16 24 Si 0.97 43.51 29.59 68.60 2.03 45.54 16 25 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 27 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 28 C 0.15 6.00 5.55 86.36 0.48 6.48 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.50 6.40 -2.39 -0.02 1.49 16 32 H 0.41 7.42 6.56 -92.71 -0.61 6.81 16 33 H 0.17 1.73 6.54 -2.91 -0.02 1.71 16 34 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.19 2.47 8.06 -2.92 -0.02 2.44 16 36 H 0.09 1.97 6.37 -2.38 -0.02 1.96 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 41 H 0.05 2.75 6.06 -2.38 -0.01 2.74 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H -0.01 -0.27 8.14 -2.38 -0.02 -0.29 16 44 H 0.06 2.06 7.44 -2.39 -0.02 2.04 16 Total: -1.00 -70.17 365.71 2.50 -67.67 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.42 Total: 13.26 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.02 Total: 6.98 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -5.85 Total: -114.82 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.76 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.07 Total: -0.88 kcal Total: -70.17 2.50 -67.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025539505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.033 kcal (2) G-P(sol) polarization free energy of solvation -70.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds