Wall clock time and date at job start Tue Mar 31 2020 21:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47093 * 2 1 4 4 N 1.46497 * 109.47694 * 239.99557 * 2 1 3 5 5 C 1.34778 * 119.99913 * 84.99555 * 4 2 1 6 6 O 1.21520 * 119.99878 * 0.02562 * 5 4 2 7 7 C 1.48072 * 119.99772 * 180.02562 * 5 4 2 8 8 C 1.39865 * 120.93654 * 0.02562 * 7 5 4 9 9 C 1.38085 * 119.02398 * 179.97438 * 8 7 5 10 10 N 1.31848 * 120.93489 * 0.02562 * 9 8 7 11 11 C 1.31757 * 122.07472 * 359.97438 * 10 9 8 12 12 C 1.38353 * 120.87390 * 359.73889 * 11 10 9 13 13 Cl 1.73593 * 120.52416 * 180.26444 * 12 11 10 14 14 C 1.53005 * 109.47269 * 119.99243 * 2 1 3 15 15 H 1.08998 * 109.52602 * 180.02562 * 14 2 1 16 16 C 1.53039 * 109.49605 * 300.16549 * 14 2 1 17 17 C 1.53358 * 109.60526 * 181.31987 * 16 14 2 18 18 C 1.53190 * 109.15073 * 298.71334 * 17 16 14 19 19 N 1.46934 * 108.89394 * 54.57373 * 18 17 16 20 20 C 1.36935 * 120.62776 * 126.33972 * 19 18 17 21 21 H 1.08003 * 120.00334 * 331.82288 * 20 19 18 22 22 C 1.38816 * 120.00109 * 151.82327 * 20 19 18 23 23 N 1.31624 * 119.99356 * 343.07479 * 22 20 19 24 24 Si 1.86793 * 120.00395 * 163.07501 * 22 20 19 25 25 H 1.48500 * 109.47341 * 59.99642 * 24 22 20 26 26 H 1.48496 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46651 * 299.99824 * 24 22 20 28 28 C 1.46927 * 118.73962 * 306.32403 * 19 18 17 29 29 H 1.09005 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47191 * 300.00442 * 1 2 3 31 31 H 1.08995 * 109.46724 * 60.00485 * 1 2 3 32 32 H 0.96995 * 120.00177 * 265.00615 * 4 2 1 33 33 H 1.08006 * 120.48551 * 359.95500 * 8 7 5 34 34 H 1.07996 * 119.52930 * 180.02562 * 9 8 7 35 35 H 1.07999 * 119.56409 * 180.02562 * 11 10 9 36 36 H 1.08994 * 109.46381 * 301.33378 * 16 14 2 37 37 H 1.09004 * 109.45867 * 61.31091 * 16 14 2 38 38 H 1.08993 * 109.68345 * 178.74904 * 17 16 14 39 39 H 1.09002 * 109.46954 * 58.54958 * 17 16 14 40 40 H 1.08996 * 109.58641 * 294.72001 * 18 17 16 41 41 H 1.09000 * 109.58862 * 174.43601 * 18 17 16 42 42 H 0.96997 * 119.99488 * 180.02562 * 23 22 20 43 43 H 1.08997 * 109.58430 * 173.39008 * 28 19 18 44 44 H 1.09000 * 109.58086 * 293.67640 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1960 5 6 2.1472 -0.0184 -2.3571 6 8 1.8585 1.1608 -2.4116 7 6 2.6403 -0.7166 -3.5661 8 6 2.9777 -2.0734 -3.5255 9 6 3.4331 -2.6852 -4.6766 10 7 3.5521 -2.0089 -5.8021 11 6 3.2459 -0.7301 -5.8857 12 6 2.7764 -0.0390 -4.7829 13 17 2.3692 1.6441 -4.9049 14 6 2.0401 -0.7211 1.2494 15 1 3.1300 -0.7212 1.2505 16 6 1.5269 -0.0024 2.4992 17 6 2.0637 -0.7036 3.7530 18 6 1.5533 -2.1478 3.7784 19 7 1.9180 -2.8037 2.5152 20 6 2.6065 -3.9873 2.5171 21 1 3.2674 -4.2264 3.3373 22 6 2.4551 -4.8801 1.4650 23 7 1.4301 -4.7656 0.6472 24 14 3.7059 -6.2437 1.2096 25 1 3.7447 -7.1118 2.4139 26 1 3.3200 -7.0542 0.0267 27 1 5.0479 -5.6487 0.9850 28 6 1.5297 -2.1655 1.2500 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3632 0.5137 -0.8900 32 1 2.2491 -1.6318 -1.1524 33 1 2.8837 -2.6342 -2.6073 34 1 3.6955 -3.7326 -4.6546 35 1 3.3585 -0.2157 -6.8286 36 1 1.8681 1.0327 2.4888 37 1 0.4371 -0.0254 2.5096 38 1 1.7170 -0.1796 4.6436 39 1 3.1535 -0.7033 3.7310 40 1 0.4692 -2.1503 3.8916 41 1 2.0089 -2.6818 4.6123 42 1 1.3241 -5.3897 -0.0877 43 1 1.9720 -2.7097 0.4155 44 1 0.4438 -2.1717 1.1560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025539507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:36 Heat of formation + Delta-G solvation = 15.507390 kcal Electronic energy + Delta-G solvation = -27610.584409 eV Core-core repulsion = 23782.367717 eV Total energy + Delta-G solvation = -3828.216692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.76445 -39.39307 -37.94532 -36.64494 -35.13805 -33.40077 -32.84127 -31.35582 -31.00915 -29.93690 -28.24433 -25.42424 -25.27378 -23.91790 -23.36514 -22.31442 -20.96528 -20.17427 -18.87540 -18.13999 -16.93470 -16.82017 -16.31271 -15.60582 -15.50377 -15.10847 -14.89873 -14.30893 -14.23726 -14.02827 -14.01941 -13.70437 -13.54554 -13.07736 -12.63540 -12.43594 -12.36297 -12.24892 -12.04018 -11.80934 -11.58559 -11.25144 -11.10087 -10.90960 -10.67982 -10.51576 -10.32047 -10.23169 -10.18972 -10.05233 -9.98239 -9.63695 -9.48728 -9.39489 -9.17416 -8.83066 -8.57329 -6.75063 -5.90303 -3.32107 0.41731 0.69091 1.92262 2.85819 3.14824 3.29174 3.35123 3.37551 3.57585 4.13231 4.39376 4.40271 4.49042 4.61129 4.94566 5.06860 5.21536 5.32736 5.37063 5.48304 5.50758 5.52812 5.60382 5.64809 5.73537 5.84829 6.00638 6.15333 6.18136 6.22272 6.23382 6.38012 6.43926 6.48805 6.61129 6.71646 6.77649 6.82357 6.95805 7.20209 7.46838 7.52658 7.64088 7.68963 8.25730 8.33677 9.10765 9.73574 10.31304 11.17893 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.004183 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.411784 B = 6691.794877 C = 8816.004921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.154 3.846 3 H 0.081 0.919 4 N -0.706 5.706 5 C 0.551 3.449 6 O -0.518 6.518 7 C -0.080 4.080 8 C -0.124 4.124 9 C 0.099 3.901 10 N -0.457 5.457 11 C 0.104 3.896 12 C -0.045 4.045 13 Cl -0.020 7.020 14 C -0.124 4.124 15 H 0.069 0.931 16 C -0.101 4.101 17 C -0.134 4.134 18 C 0.144 3.856 19 N -0.592 5.592 20 C -0.250 4.250 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.905 5.905 24 Si 0.898 3.102 25 H -0.282 1.282 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.177 3.823 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.406 0.594 33 H 0.154 0.846 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.052 0.948 42 H 0.254 0.746 43 H 0.082 0.918 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 8.647 -8.085 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.099 0.901 4 N -0.359 5.359 5 C 0.335 3.665 6 O -0.394 6.394 7 C -0.092 4.092 8 C -0.145 4.145 9 C -0.057 4.057 10 N -0.166 5.166 11 C -0.054 4.054 12 C -0.076 4.076 13 Cl 0.009 6.991 14 C -0.145 4.145 15 H 0.087 0.913 16 C -0.139 4.139 17 C -0.173 4.173 18 C 0.017 3.983 19 N -0.314 5.314 20 C -0.380 4.380 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.550 5.550 24 Si 0.728 3.272 25 H -0.208 1.208 26 H -0.215 1.215 27 H -0.210 1.210 28 C 0.051 3.949 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.244 0.756 33 H 0.171 0.829 34 H 0.188 0.812 35 H 0.186 0.814 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.536 9.081 -8.960 12.849 hybrid contribution 0.395 -0.765 0.624 1.063 sum 1.931 8.316 -8.336 11.932 Atomic orbital electron populations 1.22264 0.95326 1.03082 1.01686 1.21007 0.94243 0.96383 0.83369 0.90133 1.46154 1.65769 1.14730 1.09244 1.17962 0.78881 0.86690 0.82939 1.90830 1.49376 1.14690 1.84498 1.20411 1.00245 0.94336 0.94163 1.22585 0.97082 0.93348 1.01459 1.22905 0.94758 1.00787 0.87281 1.67692 1.13555 1.07485 1.27890 1.22827 0.95094 0.90106 0.97407 1.22250 1.01441 0.88865 0.95008 1.98419 1.91331 1.11411 1.97955 1.22150 1.00669 0.99614 0.92053 0.91296 1.21477 1.00344 0.97534 0.94579 1.22054 1.00665 0.98284 0.96318 1.20928 0.96410 0.91011 0.89923 1.44006 1.65417 1.22509 0.99478 1.19184 1.17637 0.94052 1.07089 0.91759 1.25004 0.97032 0.97338 1.00163 1.70034 1.27344 1.38539 1.19049 0.86429 0.81326 0.81863 0.77576 1.20840 1.21512 1.21036 1.20855 0.96827 0.86897 0.90300 0.91181 0.91544 0.92929 0.75602 0.82862 0.81214 0.81369 0.93449 0.92098 0.93009 0.92475 0.96453 0.92941 0.93606 0.89963 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 8.79 37.16 0.33 -2.17 16 2 C 0.15 2.41 2.41 -67.93 -0.16 2.24 16 3 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 4 N -0.71 -10.82 4.96 -54.68 -0.27 -11.09 16 5 C 0.55 8.59 7.76 -12.23 -0.09 8.49 16 6 O -0.52 -9.09 13.83 5.35 0.07 -9.02 16 7 C -0.08 -1.10 5.91 -104.62 -0.62 -1.71 16 8 C -0.12 -1.50 9.61 -39.03 -0.38 -1.88 16 9 C 0.10 1.10 11.17 -17.60 -0.20 0.91 16 10 N -0.46 -5.46 10.33 -13.28 -0.14 -5.60 16 11 C 0.10 1.17 10.99 -17.54 -0.19 0.97 16 12 C -0.05 -0.59 6.38 -38.90 -0.25 -0.83 16 13 Cl -0.02 -0.27 26.24 -51.86 -1.36 -1.63 16 14 C -0.12 -2.12 2.33 -90.50 -0.21 -2.33 16 15 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 16 C -0.10 -1.58 4.78 -26.53 -0.13 -1.71 16 17 C -0.13 -2.19 6.11 -26.45 -0.16 -2.35 16 18 C 0.14 2.84 6.50 -3.71 -0.02 2.82 16 19 N -0.59 -13.72 2.99 -172.31 -0.52 -14.23 16 20 C -0.25 -6.41 9.58 -15.06 -0.14 -6.56 16 21 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 23 N -0.90 -23.69 11.20 55.49 0.62 -23.07 16 24 Si 0.90 20.12 29.59 -169.99 -5.03 15.09 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.18 3.70 4.08 -3.71 -0.02 3.69 16 29 H 0.07 1.15 6.32 -51.93 -0.33 0.82 16 30 H 0.07 0.92 6.46 -51.93 -0.34 0.58 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 6.22 5.11 -40.82 -0.21 6.01 16 33 H 0.15 1.77 6.54 -52.48 -0.34 1.42 16 34 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.94 6.50 -51.93 -0.34 0.60 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 42 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 43 H 0.08 1.85 4.65 -51.93 -0.24 1.61 16 44 H 0.03 0.59 6.19 -51.93 -0.32 0.27 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -28.75 360.19 -9.37 -38.12 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.85 Total: 6.43 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.33 Total: -0.43 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.30 Total: -53.99 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.36 Total: -1.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.75 -9.37 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025539507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.627 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds