Wall clock time and date at job start Tue Mar 31 2020 21:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47093 * 2 1 4 4 N 1.46497 * 109.47694 * 239.99557 * 2 1 3 5 5 C 1.34778 * 119.99913 * 84.99555 * 4 2 1 6 6 O 1.21520 * 119.99878 * 0.02562 * 5 4 2 7 7 C 1.48072 * 119.99772 * 180.02562 * 5 4 2 8 8 C 1.39865 * 120.93654 * 0.02562 * 7 5 4 9 9 C 1.38085 * 119.02398 * 179.97438 * 8 7 5 10 10 N 1.31848 * 120.93489 * 0.02562 * 9 8 7 11 11 C 1.31757 * 122.07472 * 359.97438 * 10 9 8 12 12 C 1.38353 * 120.87390 * 359.73889 * 11 10 9 13 13 Cl 1.73593 * 120.52416 * 180.26444 * 12 11 10 14 14 C 1.53005 * 109.47269 * 119.99243 * 2 1 3 15 15 H 1.08998 * 109.52602 * 180.02562 * 14 2 1 16 16 C 1.53039 * 109.49605 * 300.16549 * 14 2 1 17 17 C 1.53358 * 109.60526 * 181.31987 * 16 14 2 18 18 C 1.53190 * 109.15073 * 298.71334 * 17 16 14 19 19 N 1.46934 * 108.89394 * 54.57373 * 18 17 16 20 20 C 1.36935 * 120.62776 * 126.33972 * 19 18 17 21 21 H 1.08003 * 120.00334 * 331.82288 * 20 19 18 22 22 C 1.38816 * 120.00109 * 151.82327 * 20 19 18 23 23 N 1.31624 * 119.99356 * 343.07479 * 22 20 19 24 24 Si 1.86793 * 120.00395 * 163.07501 * 22 20 19 25 25 H 1.48500 * 109.47341 * 59.99642 * 24 22 20 26 26 H 1.48496 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46651 * 299.99824 * 24 22 20 28 28 C 1.46927 * 118.73962 * 306.32403 * 19 18 17 29 29 H 1.09005 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47191 * 300.00442 * 1 2 3 31 31 H 1.08995 * 109.46724 * 60.00485 * 1 2 3 32 32 H 0.96995 * 120.00177 * 265.00615 * 4 2 1 33 33 H 1.08006 * 120.48551 * 359.95500 * 8 7 5 34 34 H 1.07996 * 119.52930 * 180.02562 * 9 8 7 35 35 H 1.07999 * 119.56409 * 180.02562 * 11 10 9 36 36 H 1.08994 * 109.46381 * 301.33378 * 16 14 2 37 37 H 1.09004 * 109.45867 * 61.31091 * 16 14 2 38 38 H 1.08993 * 109.68345 * 178.74904 * 17 16 14 39 39 H 1.09002 * 109.46954 * 58.54958 * 17 16 14 40 40 H 1.08996 * 109.58641 * 294.72001 * 18 17 16 41 41 H 1.09000 * 109.58862 * 174.43601 * 18 17 16 42 42 H 0.96997 * 119.99488 * 180.02562 * 23 22 20 43 43 H 1.08997 * 109.58430 * 173.39008 * 28 19 18 44 44 H 1.09000 * 109.58086 * 293.67640 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1960 5 6 2.1472 -0.0184 -2.3571 6 8 1.8585 1.1608 -2.4116 7 6 2.6403 -0.7166 -3.5661 8 6 2.9777 -2.0734 -3.5255 9 6 3.4331 -2.6852 -4.6766 10 7 3.5521 -2.0089 -5.8021 11 6 3.2459 -0.7301 -5.8857 12 6 2.7764 -0.0390 -4.7829 13 17 2.3692 1.6441 -4.9049 14 6 2.0401 -0.7211 1.2494 15 1 3.1300 -0.7212 1.2505 16 6 1.5269 -0.0024 2.4992 17 6 2.0637 -0.7036 3.7530 18 6 1.5533 -2.1478 3.7784 19 7 1.9180 -2.8037 2.5152 20 6 2.6065 -3.9873 2.5171 21 1 3.2674 -4.2264 3.3373 22 6 2.4551 -4.8801 1.4650 23 7 1.4301 -4.7656 0.6472 24 14 3.7059 -6.2437 1.2096 25 1 3.7447 -7.1118 2.4139 26 1 3.3200 -7.0542 0.0267 27 1 5.0479 -5.6487 0.9850 28 6 1.5297 -2.1655 1.2500 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3632 0.5137 -0.8900 32 1 2.2491 -1.6318 -1.1524 33 1 2.8837 -2.6342 -2.6073 34 1 3.6955 -3.7326 -4.6546 35 1 3.3585 -0.2157 -6.8286 36 1 1.8681 1.0327 2.4888 37 1 0.4371 -0.0254 2.5096 38 1 1.7170 -0.1796 4.6436 39 1 3.1535 -0.7033 3.7310 40 1 0.4692 -2.1503 3.8916 41 1 2.0089 -2.6818 4.6123 42 1 1.3241 -5.3897 -0.0877 43 1 1.9720 -2.7097 0.4155 44 1 0.4438 -2.1717 1.1560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025539507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:35 Heat of formation + Delta-G solvation = -0.452212 kcal Electronic energy + Delta-G solvation = -27611.276469 eV Core-core repulsion = 23782.367717 eV Total energy + Delta-G solvation = -3828.908752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.81911 -40.58473 -39.35242 -37.64313 -36.58046 -34.89575 -34.08646 -32.57842 -32.13352 -31.55282 -29.63428 -27.17253 -26.42603 -25.06100 -24.47468 -23.90124 -22.29904 -21.45288 -20.30169 -19.32249 -18.57897 -17.97561 -17.30208 -16.95740 -16.67324 -16.42569 -16.27046 -15.80628 -15.54752 -15.20447 -15.16267 -15.10912 -14.76467 -14.62762 -14.12558 -13.93518 -13.67464 -13.33759 -13.20379 -13.04358 -12.96304 -12.77668 -12.61056 -12.37783 -12.27081 -12.10289 -11.83810 -11.71631 -11.48915 -11.35332 -11.13912 -11.06816 -11.03476 -10.49868 -10.47523 -10.15938 -10.04684 -8.59391 -7.82513 -5.27216 -0.60624 -0.22259 0.94155 1.50492 1.52668 1.58834 1.73188 1.97594 2.54866 2.58195 3.29327 3.29499 3.36616 3.48523 3.63630 3.65463 3.94368 4.02792 4.04809 4.15762 4.32429 4.38759 4.46438 4.50215 4.52851 4.64794 4.70367 4.76679 4.86460 4.87661 5.01023 5.05963 5.18488 5.20218 5.28908 5.29810 5.41820 5.46978 5.50499 5.57802 5.71487 5.82306 6.38919 6.44518 6.61701 7.02636 7.21150 7.90981 8.43416 9.22887 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.004183 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.411784 B = 6691.794877 C = 8816.004921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.085 0.915 4 N -0.707 5.707 5 C 0.550 3.450 6 O -0.540 6.540 7 C -0.096 4.096 8 C -0.126 4.126 9 C 0.103 3.897 10 N -0.465 5.465 11 C 0.112 3.888 12 C -0.055 4.055 13 Cl -0.026 7.026 14 C -0.110 4.110 15 H 0.058 0.942 16 C -0.100 4.100 17 C -0.123 4.123 18 C 0.137 3.863 19 N -0.611 5.611 20 C -0.268 4.268 21 H 0.058 0.942 22 C -0.037 4.037 23 N -0.926 5.926 24 Si 0.956 3.044 25 H -0.285 1.285 26 H -0.288 1.288 27 H -0.279 1.279 28 C 0.188 3.812 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.406 0.594 33 H 0.155 0.845 34 H 0.197 0.803 35 H 0.197 0.803 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.013 0.987 41 H 0.047 0.953 42 H 0.252 0.748 43 H 0.062 0.938 44 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 9.170 -8.463 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.103 0.897 4 N -0.359 5.359 5 C 0.336 3.664 6 O -0.418 6.418 7 C -0.108 4.108 8 C -0.147 4.147 9 C -0.052 4.052 10 N -0.174 5.174 11 C -0.046 4.046 12 C -0.085 4.085 13 Cl 0.003 6.997 14 C -0.130 4.130 15 H 0.076 0.924 16 C -0.138 4.138 17 C -0.162 4.162 18 C 0.011 3.989 19 N -0.334 5.334 20 C -0.398 4.398 21 H 0.076 0.924 22 C -0.233 4.233 23 N -0.571 5.571 24 Si 0.784 3.216 25 H -0.212 1.212 26 H -0.214 1.214 27 H -0.205 1.205 28 C 0.062 3.938 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.243 0.757 33 H 0.172 0.828 34 H 0.213 0.787 35 H 0.214 0.786 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 2.216 9.616 -9.323 13.576 hybrid contribution 0.162 -0.968 0.771 1.248 sum 2.378 8.648 -8.552 12.393 Atomic orbital electron populations 1.22177 0.94842 1.02077 1.02350 1.20938 0.94485 0.96208 0.82849 0.89740 1.46170 1.65690 1.14660 1.09349 1.18226 0.78331 0.86487 0.83345 1.90808 1.50488 1.15586 1.84906 1.20379 1.01493 0.95098 0.93796 1.22637 0.97223 0.92752 1.02053 1.23326 0.93508 1.01842 0.86565 1.67797 1.13778 1.07751 1.28075 1.23251 0.93587 0.89874 0.97870 1.22383 1.02142 0.88735 0.95247 1.98414 1.91450 1.11884 1.97948 1.21931 0.99809 0.97443 0.93839 0.92352 1.21499 1.00608 0.98578 0.93096 1.21943 1.00224 0.95995 0.98077 1.21083 0.96209 0.93059 0.88499 1.44288 1.65528 1.22421 1.01191 1.19420 1.17958 0.95229 1.07167 0.92404 1.25592 0.98410 0.99236 1.00060 1.70151 1.28451 1.39219 1.19309 0.85534 0.79501 0.79434 0.77083 1.21151 1.21387 1.20526 1.20668 0.95395 0.88794 0.88936 0.92917 0.89943 0.93163 0.75686 0.82764 0.78655 0.78626 0.90767 0.91641 0.89946 0.93011 0.96873 0.93426 0.93825 0.91983 0.97518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 8.79 71.98 0.63 -4.00 16 2 C 0.16 4.88 2.41 44.99 0.11 4.98 16 3 H 0.08 2.57 7.58 -2.39 -0.02 2.56 16 4 N -0.71 -21.73 4.96 -445.19 -2.21 -23.94 16 5 C 0.55 17.12 7.76 86.85 0.67 17.79 16 6 O -0.54 -18.83 13.83 -3.78 -0.05 -18.88 16 7 C -0.10 -2.60 5.91 -19.86 -0.12 -2.72 16 8 C -0.13 -2.97 9.61 22.63 0.22 -2.75 16 9 C 0.10 2.14 11.17 84.65 0.95 3.08 16 10 N -0.46 -10.19 10.33 -195.91 -2.02 -12.21 16 11 C 0.11 2.32 10.99 84.73 0.93 3.25 16 12 C -0.05 -1.36 6.38 22.71 0.14 -1.22 16 13 Cl -0.03 -0.67 26.24 -2.72 -0.07 -0.74 16 14 C -0.11 -3.67 2.33 -10.71 -0.03 -3.69 16 15 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 16 C -0.10 -2.90 4.78 30.73 0.15 -2.75 16 17 C -0.12 -3.79 6.11 30.78 0.19 -3.60 16 18 C 0.14 5.36 6.50 86.36 0.56 5.93 16 19 N -0.61 -28.57 2.99 -699.08 -2.09 -30.67 16 20 C -0.27 -13.88 9.58 84.03 0.81 -13.07 16 21 H 0.06 3.00 7.89 -2.91 -0.02 2.98 16 22 C -0.04 -1.88 4.92 84.86 0.42 -1.47 16 23 N -0.93 -49.11 11.20 21.65 0.24 -48.87 16 24 Si 0.96 41.44 29.59 68.60 2.03 43.47 16 25 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 28 C 0.19 7.94 4.08 86.36 0.35 8.29 16 29 H 0.05 1.74 6.32 -2.38 -0.02 1.73 16 30 H 0.08 2.15 6.46 -2.39 -0.02 2.13 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.41 12.68 5.11 -92.71 -0.47 12.20 16 33 H 0.15 3.55 6.54 -2.91 -0.02 3.54 16 34 H 0.20 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.86 6.50 -2.38 -0.02 1.85 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 42 H 0.25 12.94 8.31 -92.71 -0.77 12.17 16 43 H 0.06 2.86 4.65 -2.39 -0.01 2.85 16 44 H 0.01 0.31 6.19 -2.39 -0.01 0.30 16 Total: -1.00 -61.24 360.19 2.37 -58.87 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.56 Total: 24.91 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.98 Total: 8.06 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -6.08 Total: -115.68 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.07 Total: -0.74 kcal Total: -61.24 2.37 -58.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025539507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.420 kcal (2) G-P(sol) polarization free energy of solvation -61.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds