Wall clock time and date at job start Tue Mar 31 2020 21:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46997 * 2 1 4 4 N 1.46501 * 109.46787 * 119.99672 * 2 1 3 5 5 C 1.34773 * 120.00177 * 275.00088 * 4 2 1 6 6 O 1.21553 * 120.00385 * 0.02562 * 5 4 2 7 7 C 1.47843 * 119.99805 * 180.02562 * 5 4 2 8 8 C 1.39556 * 120.55746 * 0.02562 * 7 5 4 9 9 N 1.31662 * 120.59986 * 179.97438 * 8 7 5 10 10 C 1.31940 * 121.89091 * 359.97438 * 9 8 7 11 11 C 1.38430 * 121.06396 * 0.03118 * 10 9 8 12 12 Cl 1.73603 * 120.36176 * 179.97438 * 11 10 9 13 13 C 1.38504 * 119.27909 * 359.69270 * 11 10 9 14 14 C 1.52995 * 109.47358 * 240.00328 * 2 1 3 15 15 H 1.09001 * 109.49125 * 300.06061 * 14 2 1 16 16 C 1.53032 * 109.52870 * 60.14381 * 14 2 1 17 17 C 1.53036 * 109.54203 * 181.33727 * 16 14 2 18 18 C 1.53630 * 109.24100 * 298.51188 * 17 16 14 19 19 N 1.46929 * 108.54105 * 54.85378 * 18 17 16 20 20 C 1.36936 * 120.62839 * 126.37570 * 19 18 17 21 21 H 1.08001 * 119.99493 * 207.52679 * 20 19 18 22 22 C 1.38811 * 120.00212 * 27.52222 * 20 19 18 23 23 N 1.31616 * 119.99796 * 25.85089 * 22 20 19 24 24 Si 1.86798 * 119.99834 * 205.57383 * 22 20 19 25 25 H 1.48497 * 109.47151 * 90.00469 * 24 22 20 26 26 H 1.48500 * 109.46743 * 210.00191 * 24 22 20 27 27 H 1.48499 * 109.47212 * 329.99989 * 24 22 20 28 28 C 1.46929 * 118.73997 * 306.09298 * 19 18 17 29 29 H 1.09003 * 109.47271 * 300.00189 * 1 2 3 30 30 H 1.08999 * 109.46650 * 59.99894 * 1 2 3 31 31 H 1.08999 * 109.46997 * 179.97438 * 1 2 3 32 32 H 0.97006 * 119.99419 * 95.00388 * 4 2 1 33 33 H 1.08007 * 119.69889 * 0.02562 * 8 7 5 34 34 H 1.08006 * 119.46887 * 179.97438 * 10 9 8 35 35 H 1.08000 * 120.86411 * 180.29904 * 13 11 10 36 36 H 1.09007 * 109.46104 * 301.35801 * 16 14 2 37 37 H 1.09003 * 109.46087 * 61.31347 * 16 14 2 38 38 H 1.09004 * 109.50061 * 58.58117 * 17 16 14 39 39 H 1.08995 * 109.50113 * 178.65377 * 17 16 14 40 40 H 1.09003 * 109.73907 * 295.12133 * 18 17 16 41 41 H 1.08993 * 109.66768 * 174.54799 * 18 17 16 42 42 H 0.96996 * 120.00373 * 4.05514 * 23 22 20 43 43 H 1.08992 * 109.58740 * 173.64770 * 28 19 18 44 44 H 1.09001 * 109.59013 * 293.93703 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8575 1.1611 2.4119 7 6 2.6402 -0.7150 3.5642 8 6 2.9764 -2.0686 3.5144 9 7 3.4163 -2.6898 4.5887 10 6 3.5574 -2.0689 5.7443 11 6 3.2455 -0.7267 5.8767 12 17 3.4375 0.0719 7.4061 13 6 2.7842 -0.0265 4.7744 14 6 2.0401 -0.7211 -1.2492 15 1 1.6760 -1.7486 -1.2502 16 6 1.5337 0.0014 -2.4996 17 6 2.0160 -0.7388 -3.7492 18 6 3.5520 -0.7358 -3.7782 19 7 4.0443 -1.3012 -2.5145 20 6 4.9309 -2.3448 -2.5157 21 1 4.9560 -3.0328 -1.6836 22 6 5.7972 -2.5183 -3.5863 23 7 6.1479 -1.4856 -4.3232 24 14 6.4714 -4.2161 -3.9765 25 1 5.5590 -4.9052 -4.9241 26 1 7.8167 -4.0851 -4.5914 27 1 6.5744 -5.0076 -2.7243 28 6 3.5720 -0.7215 -1.2497 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2490 -1.6318 1.1526 33 1 2.8757 -2.6112 2.5860 34 1 3.9212 -2.6169 6.6009 35 1 2.5379 1.0225 4.8477 36 1 0.4439 0.0246 -2.4893 37 1 1.9183 1.0212 -2.5105 38 1 1.6522 -1.7661 -3.7267 39 1 1.6351 -0.2374 -4.6388 40 1 3.9161 0.2858 -3.8877 41 1 3.9044 -1.3429 -4.6120 42 1 5.8485 -0.5947 -4.0834 43 1 3.9375 -1.3193 -0.4148 44 1 3.9397 0.3003 -1.1562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025557421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:23 Heat of formation + Delta-G solvation = 2.423162 kcal Electronic energy + Delta-G solvation = -26864.220095 eV Core-core repulsion = 23035.436028 eV Total energy + Delta-G solvation = -3828.784066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.03232 -39.58743 -38.06789 -37.08569 -35.55380 -33.43774 -32.94059 -32.01853 -30.61925 -30.47698 -28.50336 -25.55192 -24.94298 -24.06440 -23.28068 -22.17291 -21.03035 -20.56854 -19.32304 -18.35240 -17.42199 -17.35909 -16.92825 -15.87790 -15.71374 -15.32881 -14.68335 -14.52577 -14.18945 -14.04524 -13.74113 -13.67963 -13.63810 -13.43456 -13.02159 -12.90517 -12.69013 -12.47149 -12.38858 -11.94036 -11.69487 -11.67515 -11.20638 -10.94339 -10.69978 -10.58441 -10.40477 -10.29189 -10.26308 -10.09434 -9.98520 -9.90797 -9.74861 -9.48870 -9.33219 -9.09566 -8.37645 -6.90760 -6.11724 -3.25836 0.12144 0.56477 1.51486 2.54511 2.93048 3.37122 3.48545 3.49807 3.66595 3.83282 4.19616 4.31290 4.37389 4.53509 4.61802 4.76869 4.91327 5.11645 5.24135 5.28562 5.36267 5.42331 5.44797 5.47883 5.61755 5.65951 5.85612 5.86759 5.91670 5.98186 6.12871 6.14690 6.26883 6.35976 6.44957 6.47421 6.64235 6.66535 6.77741 7.06680 7.17651 7.26650 7.34234 7.96437 7.99825 8.54530 9.08412 9.81673 10.26642 11.18397 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.002910 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.381780 B = 9618.698763 C =11221.403262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.565 3.435 6 O -0.533 6.533 7 C -0.170 4.170 8 C 0.141 3.859 9 N -0.468 5.468 10 C 0.135 3.865 11 C -0.099 4.099 12 Cl -0.047 7.047 13 C -0.009 4.009 14 C -0.111 4.111 15 H 0.074 0.926 16 C -0.101 4.101 17 C -0.136 4.136 18 C 0.148 3.852 19 N -0.598 5.598 20 C -0.353 4.353 21 H 0.056 0.944 22 C -0.023 4.023 23 N -0.915 5.915 24 Si 1.067 2.933 25 H -0.293 1.293 26 H -0.290 1.290 27 H -0.292 1.292 28 C 0.157 3.843 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.401 0.599 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.016 0.984 41 H 0.078 0.922 42 H 0.269 0.731 43 H 0.052 0.948 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.651 1.147 17.447 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.350 3.650 6 O -0.411 6.411 7 C -0.176 4.176 8 C -0.017 4.017 9 N -0.175 5.175 10 C -0.022 4.022 11 C -0.128 4.128 12 Cl -0.018 7.018 13 C -0.036 4.036 14 C -0.132 4.132 15 H 0.092 0.908 16 C -0.139 4.139 17 C -0.176 4.176 18 C 0.022 3.978 19 N -0.322 5.322 20 C -0.482 4.482 21 H 0.074 0.926 22 C -0.226 4.226 23 N -0.555 5.555 24 Si 0.897 3.103 25 H -0.220 1.220 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.030 3.970 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.237 0.763 33 H 0.186 0.814 34 H 0.188 0.812 35 H 0.176 0.824 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -9.640 0.291 16.476 19.091 hybrid contribution -1.002 1.370 1.319 2.149 sum -10.642 1.661 17.795 20.801 Atomic orbital electron populations 1.22208 0.95333 1.02087 1.02379 1.21123 0.93711 0.97577 0.83225 0.89316 1.46020 1.66303 1.14226 1.09476 1.17843 0.77982 0.86450 0.82738 1.90788 1.50277 1.15188 1.84837 1.21082 1.05444 0.95734 0.95302 1.23215 0.90538 0.90632 0.97340 1.67895 1.12857 1.38038 0.98756 1.23065 0.93163 0.89791 0.96216 1.22018 1.06470 0.95030 0.89292 1.98400 1.95984 1.79648 1.27810 1.21669 0.91184 1.01349 0.89383 1.21974 0.99453 0.99363 0.92426 0.90793 1.21439 0.99038 0.98961 0.94472 1.22127 0.99649 0.99780 0.96001 1.21060 0.89715 0.96551 0.90431 1.44122 1.50416 1.38424 0.99195 1.19970 1.14917 1.03908 1.09356 0.92626 1.25841 0.94998 1.04697 0.97043 1.70755 1.41663 0.99552 1.43483 0.83473 0.76302 0.74844 0.75636 1.22031 1.21610 1.21850 1.20850 0.89919 0.96150 0.90045 0.92515 0.91083 0.92499 0.76336 0.81412 0.81201 0.82379 0.92761 0.92539 0.92343 0.92993 0.96602 0.90346 0.91957 0.92998 0.96734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.14 37.16 0.34 -1.51 16 2 C 0.15 1.95 2.16 -67.93 -0.15 1.81 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 N -0.71 -8.56 4.43 -54.75 -0.24 -8.81 16 5 C 0.56 7.37 7.75 -12.33 -0.10 7.27 16 6 O -0.53 -8.55 16.08 5.32 0.09 -8.47 16 7 C -0.17 -1.88 5.89 -104.82 -0.62 -2.50 16 8 C 0.14 1.43 10.71 -17.13 -0.18 1.25 16 9 N -0.47 -4.95 10.34 -12.88 -0.13 -5.08 16 10 C 0.14 1.21 10.97 -17.43 -0.19 1.01 16 11 C -0.10 -0.91 6.34 -39.41 -0.25 -1.16 16 12 Cl -0.05 -0.38 28.98 -51.86 -1.50 -1.89 16 13 C -0.01 -0.09 9.52 -38.83 -0.37 -0.46 16 14 C -0.11 -1.70 1.97 -90.50 -0.18 -1.88 16 15 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.10 -1.54 4.85 -26.70 -0.13 -1.67 16 17 C -0.14 -2.42 6.10 -26.39 -0.16 -2.58 16 18 C 0.15 3.35 4.72 -3.48 -0.02 3.34 16 19 N -0.60 -14.31 2.85 -172.05 -0.49 -14.80 16 20 C -0.35 -9.49 9.48 -15.06 -0.14 -9.64 16 21 H 0.06 1.50 7.95 -52.49 -0.42 1.08 16 22 C -0.02 -0.65 4.66 -17.43 -0.08 -0.73 16 23 N -0.91 -27.02 12.46 55.49 0.69 -26.33 16 24 Si 1.07 24.81 29.99 -169.99 -5.10 19.71 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.16 3.08 5.55 -3.71 -0.02 3.06 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.76 6.41 -51.93 -0.33 0.43 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.40 4.15 6.48 -40.82 -0.26 3.89 16 33 H 0.17 1.39 6.42 -52.48 -0.34 1.05 16 34 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.16 1.60 7.74 -52.49 -0.41 1.19 16 36 H 0.05 0.70 6.37 -51.93 -0.33 0.37 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.37 7.87 -51.93 -0.41 -0.04 16 41 H 0.08 2.01 6.31 -51.93 -0.33 1.68 16 42 H 0.27 8.03 6.69 -40.82 -0.27 7.76 16 43 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -31.63 368.56 -9.43 -41.06 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.05 Total: 3.43 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.24 Total: -4.38 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.17 Total: -55.02 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.10 Total: 19.71 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.63 -9.43 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025557421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.486 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds