Wall clock time and date at job start Tue Mar 31 2020 21:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47064 * 2 1 4 4 N 1.46496 * 109.47447 * 240.00435 * 2 1 3 5 5 C 1.34770 * 120.00426 * 84.99827 * 4 2 1 6 6 O 1.21548 * 120.00035 * 0.02562 * 5 4 2 7 7 C 1.47845 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.39564 * 120.55103 * 0.02562 * 7 5 4 9 9 N 1.31661 * 120.59144 * 180.02562 * 8 7 5 10 10 C 1.31947 * 121.89962 * 359.97438 * 9 8 7 11 11 C 1.38429 * 121.05920 * 359.97438 * 10 9 8 12 12 Cl 1.73596 * 120.35966 * 180.02562 * 11 10 9 13 13 C 1.38516 * 119.27498 * 359.72474 * 11 10 9 14 14 C 1.52999 * 109.46981 * 119.99948 * 2 1 3 15 15 H 1.08999 * 109.49828 * 179.97438 * 14 2 1 16 16 C 1.53041 * 109.49934 * 300.00429 * 14 2 1 17 17 C 1.53039 * 109.52831 * 181.32500 * 16 14 2 18 18 C 1.53199 * 109.30843 * 298.61169 * 17 16 14 19 19 N 1.46923 * 108.76565 * 54.65738 * 18 17 16 20 20 C 1.36936 * 120.62956 * 126.35825 * 19 18 17 21 21 H 1.08007 * 119.99787 * 207.97883 * 20 19 18 22 22 C 1.38804 * 120.00226 * 27.98492 * 20 19 18 23 23 N 1.31627 * 119.99900 * 17.50102 * 22 20 19 24 24 Si 1.86804 * 120.00442 * 197.49925 * 22 20 19 25 25 H 1.48504 * 109.46870 * 94.06524 * 24 22 20 26 26 H 1.48496 * 109.47350 * 214.06992 * 24 22 20 27 27 H 1.48496 * 109.46696 * 334.06866 * 24 22 20 28 28 C 1.46933 * 118.73921 * 306.38210 * 19 18 17 29 29 H 1.08996 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47623 * 300.00195 * 1 2 3 31 31 H 1.09009 * 109.46728 * 59.99844 * 1 2 3 32 32 H 0.97009 * 119.99366 * 264.99847 * 4 2 1 33 33 H 1.07999 * 119.70050 * 0.02562 * 8 7 5 34 34 H 1.07994 * 119.47074 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.85799 * 180.27339 * 13 11 10 36 36 H 1.09006 * 109.45751 * 301.33201 * 16 14 2 37 37 H 1.08996 * 109.45990 * 61.30785 * 16 14 2 38 38 H 1.08999 * 109.50033 * 58.57353 * 17 16 14 39 39 H 1.09002 * 109.49789 * 178.67824 * 17 16 14 40 40 H 1.08994 * 109.60005 * 294.86897 * 18 17 16 41 41 H 1.09003 * 109.58078 * 174.43241 * 18 17 16 42 42 H 0.96999 * 119.99791 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.58251 * 293.82457 * 28 19 18 44 44 H 1.08997 * 109.58307 * 173.39545 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1472 -0.0182 -2.3571 6 8 1.8585 1.1613 -2.4116 7 6 2.6395 -0.7152 -3.5644 8 6 2.9738 -2.0693 -3.5150 9 7 3.4128 -2.6907 -4.5895 10 6 3.5540 -2.0698 -5.7452 11 6 3.2431 -0.7274 -5.8774 12 17 3.4351 0.0712 -7.4068 13 6 2.7712 -0.0299 -4.7776 14 6 2.0400 -0.7212 1.2493 15 1 3.1300 -0.7219 1.2495 16 6 1.5301 -0.0003 2.4992 17 6 2.0669 -0.7017 3.7490 18 6 1.5532 -2.1447 3.7801 19 7 1.9149 -2.8025 2.5171 20 6 2.6014 -3.9873 2.5191 21 1 3.2429 -4.2411 1.6881 22 6 2.4728 -4.8621 3.5890 23 7 1.4607 -4.7394 4.4216 24 14 3.7361 -6.2137 3.8475 25 1 4.7803 -5.7413 4.7919 26 1 3.0679 -7.4152 4.4089 27 1 4.3645 -6.5591 2.5472 28 6 1.5263 -2.1645 1.2518 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 2.2491 -1.6317 -1.1525 33 1 2.8714 -2.6122 -2.5871 34 1 3.9179 -2.6177 -6.6017 35 1 2.5167 1.0170 -4.8531 36 1 1.8739 1.0340 2.4875 37 1 0.4404 -0.0208 2.5111 38 1 3.1566 -0.7037 3.7254 39 1 1.7226 -0.1740 4.6385 40 1 0.4693 -2.1446 3.8947 41 1 2.0109 -2.6775 4.6137 42 1 1.3707 -5.3510 5.1690 43 1 0.4402 -2.1660 1.1603 44 1 1.9662 -2.7104 0.4172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025557424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:34 Heat of formation + Delta-G solvation = 7.355381 kcal Electronic energy + Delta-G solvation = -26824.774533 eV Core-core repulsion = 22996.204344 eV Total energy + Delta-G solvation = -3828.570189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.02433 -39.59088 -38.04932 -37.08787 -35.33898 -33.29649 -32.91123 -31.99039 -30.59738 -30.49836 -28.17728 -25.44805 -25.30906 -24.08778 -23.59756 -22.27229 -21.06477 -20.36129 -18.89825 -18.27537 -17.35151 -17.02855 -16.64796 -15.73360 -15.69356 -15.31973 -14.92357 -14.62789 -14.31321 -14.11686 -13.83941 -13.63775 -13.51436 -13.14454 -13.00448 -12.65755 -12.46963 -12.44456 -12.30581 -11.87228 -11.68638 -11.66705 -11.04064 -10.98552 -10.66633 -10.54615 -10.52022 -10.28347 -10.22401 -10.14994 -9.93906 -9.83176 -9.65617 -9.47916 -9.44594 -9.06744 -8.50630 -6.72010 -5.83842 -3.26777 0.12809 0.56884 1.51375 2.55657 2.97005 3.34527 3.37938 3.42169 3.42914 3.84919 4.20103 4.32226 4.39393 4.44302 4.62897 4.82532 5.00850 5.14885 5.32461 5.35986 5.38345 5.48049 5.51806 5.62060 5.65104 5.78851 5.87256 5.93541 6.06008 6.15759 6.18425 6.26297 6.40678 6.50343 6.53689 6.65423 6.71220 6.81544 6.91255 7.28207 7.35163 7.38621 7.62500 7.74306 8.02110 8.39394 9.15716 9.79161 10.35603 11.24316 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.002778 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.834622 B =10076.430833 C =11746.360263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.085 0.915 4 N -0.710 5.710 5 C 0.563 3.437 6 O -0.535 6.535 7 C -0.171 4.171 8 C 0.141 3.859 9 N -0.467 5.467 10 C 0.135 3.865 11 C -0.100 4.100 12 Cl -0.048 7.048 13 C -0.009 4.009 14 C -0.114 4.114 15 H 0.073 0.927 16 C -0.101 4.101 17 C -0.143 4.143 18 C 0.170 3.830 19 N -0.590 5.590 20 C -0.256 4.256 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.151 3.849 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.402 0.598 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.018 0.982 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.026 0.974 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 9.538 -17.143 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.103 0.897 4 N -0.362 5.362 5 C 0.348 3.652 6 O -0.413 6.413 7 C -0.176 4.176 8 C -0.017 4.017 9 N -0.175 5.175 10 C -0.023 4.023 11 C -0.129 4.129 12 Cl -0.019 7.019 13 C -0.036 4.036 14 C -0.135 4.135 15 H 0.092 0.908 16 C -0.139 4.139 17 C -0.182 4.182 18 C 0.044 3.956 19 N -0.312 5.312 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.544 5.544 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.203 1.203 28 C 0.025 3.975 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.239 0.761 33 H 0.187 0.813 34 H 0.188 0.812 35 H 0.176 0.824 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.668 9.424 -17.083 19.582 hybrid contribution 0.552 -0.244 0.031 0.604 sum 2.220 9.180 -17.053 19.493 Atomic orbital electron populations 1.22269 0.95146 1.02867 1.02101 1.21109 0.94344 0.96806 0.83177 0.89716 1.46150 1.66083 1.14440 1.09520 1.17863 0.78036 0.86469 0.82793 1.90780 1.50445 1.15262 1.84849 1.21100 1.05446 0.95776 0.95301 1.23263 0.90448 0.90569 0.97445 1.67908 1.12870 1.37962 0.98737 1.23073 0.93233 0.89731 0.96227 1.22023 1.06490 0.95071 0.89287 1.98399 1.95988 1.79649 1.27872 1.21662 0.91229 1.01347 0.89389 1.21980 1.00871 0.98214 0.92430 0.90849 1.21434 1.00363 0.97479 0.94587 1.22184 1.00536 0.99726 0.95749 1.20794 0.96640 0.88023 0.90157 1.44012 1.65395 1.22438 0.99403 1.19167 1.18866 0.94504 1.05967 0.91710 1.25033 0.97077 0.97519 0.99845 1.70044 1.27950 1.38963 1.17481 0.86298 0.81157 0.81356 0.78091 1.21478 1.21780 1.20335 1.20967 0.96580 0.89875 0.90114 0.91535 0.91119 0.92813 0.76066 0.81283 0.81224 0.82403 0.93472 0.92101 0.92779 0.93179 0.96398 0.89624 0.93608 0.95652 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 8.78 37.16 0.33 -1.82 16 2 C 0.15 2.00 2.41 -67.93 -0.16 1.84 16 3 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 4 N -0.71 -8.69 4.95 -54.76 -0.27 -8.96 16 5 C 0.56 7.23 7.75 -12.33 -0.10 7.13 16 6 O -0.54 -8.39 16.08 5.32 0.09 -8.30 16 7 C -0.17 -1.86 5.89 -104.83 -0.62 -2.47 16 8 C 0.14 1.44 10.71 -17.13 -0.18 1.25 16 9 N -0.47 -4.93 10.34 -12.88 -0.13 -5.07 16 10 C 0.14 1.18 10.97 -17.43 -0.19 0.99 16 11 C -0.10 -0.88 6.34 -39.41 -0.25 -1.13 16 12 Cl -0.05 -0.37 28.98 -51.86 -1.50 -1.88 16 13 C -0.01 -0.09 9.52 -38.83 -0.37 -0.46 16 14 C -0.11 -1.76 2.33 -90.50 -0.21 -1.97 16 15 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 16 C -0.10 -1.56 4.78 -26.69 -0.13 -1.68 16 17 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 18 C 0.17 3.85 5.31 -3.71 -0.02 3.83 16 19 N -0.59 -13.79 2.99 -172.32 -0.52 -14.31 16 20 C -0.26 -6.65 9.58 -15.06 -0.14 -6.79 16 21 H 0.07 1.64 7.89 -52.48 -0.41 1.23 16 22 C 0.00 0.11 4.90 -17.43 -0.09 0.03 16 23 N -0.90 -25.37 11.22 55.49 0.62 -24.74 16 24 Si 0.90 21.06 29.59 -169.99 -5.03 16.04 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.15 2.80 5.30 -3.71 -0.02 2.78 16 29 H 0.07 0.89 6.32 -51.93 -0.33 0.56 16 30 H 0.07 0.87 6.46 -51.93 -0.34 0.54 16 31 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.40 4.45 5.04 -40.82 -0.21 4.24 16 33 H 0.17 1.47 6.42 -52.49 -0.34 1.13 16 34 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.16 1.53 7.74 -52.49 -0.41 1.13 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.93 6.50 -51.93 -0.34 0.59 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 2.21 6.06 -51.93 -0.31 1.89 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.03 0.48 6.18 -51.93 -0.32 0.16 16 44 H 0.05 0.80 6.52 -51.93 -0.34 0.46 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -30.15 364.06 -9.40 -39.54 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.83 Total: 3.41 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.31 Total: -1.21 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.30 Total: -53.08 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.15 -9.40 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025557424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.900 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds