Wall clock time and date at job start Tue Mar 31 2020 21:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47064 * 2 1 4 4 N 1.46496 * 109.47447 * 240.00435 * 2 1 3 5 5 C 1.34770 * 120.00426 * 84.99827 * 4 2 1 6 6 O 1.21548 * 120.00035 * 0.02562 * 5 4 2 7 7 C 1.47845 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.39564 * 120.55103 * 0.02562 * 7 5 4 9 9 N 1.31661 * 120.59144 * 180.02562 * 8 7 5 10 10 C 1.31947 * 121.89962 * 359.97438 * 9 8 7 11 11 C 1.38429 * 121.05920 * 359.97438 * 10 9 8 12 12 Cl 1.73596 * 120.35966 * 180.02562 * 11 10 9 13 13 C 1.38516 * 119.27498 * 359.72474 * 11 10 9 14 14 C 1.52999 * 109.46981 * 119.99948 * 2 1 3 15 15 H 1.08999 * 109.49828 * 179.97438 * 14 2 1 16 16 C 1.53041 * 109.49934 * 300.00429 * 14 2 1 17 17 C 1.53039 * 109.52831 * 181.32500 * 16 14 2 18 18 C 1.53199 * 109.30843 * 298.61169 * 17 16 14 19 19 N 1.46923 * 108.76565 * 54.65738 * 18 17 16 20 20 C 1.36936 * 120.62956 * 126.35825 * 19 18 17 21 21 H 1.08007 * 119.99787 * 207.97883 * 20 19 18 22 22 C 1.38804 * 120.00226 * 27.98492 * 20 19 18 23 23 N 1.31627 * 119.99900 * 17.50102 * 22 20 19 24 24 Si 1.86804 * 120.00442 * 197.49925 * 22 20 19 25 25 H 1.48504 * 109.46870 * 94.06524 * 24 22 20 26 26 H 1.48496 * 109.47350 * 214.06992 * 24 22 20 27 27 H 1.48496 * 109.46696 * 334.06866 * 24 22 20 28 28 C 1.46933 * 118.73921 * 306.38210 * 19 18 17 29 29 H 1.08996 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47623 * 300.00195 * 1 2 3 31 31 H 1.09009 * 109.46728 * 59.99844 * 1 2 3 32 32 H 0.97009 * 119.99366 * 264.99847 * 4 2 1 33 33 H 1.07999 * 119.70050 * 0.02562 * 8 7 5 34 34 H 1.07994 * 119.47074 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.85799 * 180.27339 * 13 11 10 36 36 H 1.09006 * 109.45751 * 301.33201 * 16 14 2 37 37 H 1.08996 * 109.45990 * 61.30785 * 16 14 2 38 38 H 1.08999 * 109.50033 * 58.57353 * 17 16 14 39 39 H 1.09002 * 109.49789 * 178.67824 * 17 16 14 40 40 H 1.08994 * 109.60005 * 294.86897 * 18 17 16 41 41 H 1.09003 * 109.58078 * 174.43241 * 18 17 16 42 42 H 0.96999 * 119.99791 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.58251 * 293.82457 * 28 19 18 44 44 H 1.08997 * 109.58307 * 173.39545 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1472 -0.0182 -2.3571 6 8 1.8585 1.1613 -2.4116 7 6 2.6395 -0.7152 -3.5644 8 6 2.9738 -2.0693 -3.5150 9 7 3.4128 -2.6907 -4.5895 10 6 3.5540 -2.0698 -5.7452 11 6 3.2431 -0.7274 -5.8774 12 17 3.4351 0.0712 -7.4068 13 6 2.7712 -0.0299 -4.7776 14 6 2.0400 -0.7212 1.2493 15 1 3.1300 -0.7219 1.2495 16 6 1.5301 -0.0003 2.4992 17 6 2.0669 -0.7017 3.7490 18 6 1.5532 -2.1447 3.7801 19 7 1.9149 -2.8025 2.5171 20 6 2.6014 -3.9873 2.5191 21 1 3.2429 -4.2411 1.6881 22 6 2.4728 -4.8621 3.5890 23 7 1.4607 -4.7394 4.4216 24 14 3.7361 -6.2137 3.8475 25 1 4.7803 -5.7413 4.7919 26 1 3.0679 -7.4152 4.4089 27 1 4.3645 -6.5591 2.5472 28 6 1.5263 -2.1645 1.2518 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 2.2491 -1.6317 -1.1525 33 1 2.8714 -2.6122 -2.5871 34 1 3.9179 -2.6177 -6.6017 35 1 2.5167 1.0170 -4.8531 36 1 1.8739 1.0340 2.4875 37 1 0.4404 -0.0208 2.5111 38 1 3.1566 -0.7037 3.7254 39 1 1.7226 -0.1740 4.6385 40 1 0.4693 -2.1446 3.8947 41 1 2.0109 -2.6775 4.6137 42 1 1.3707 -5.3510 5.1690 43 1 0.4402 -2.1660 1.1603 44 1 1.9662 -2.7104 0.4172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025557424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:33 Heat of formation + Delta-G solvation = -10.190229 kcal Electronic energy + Delta-G solvation = -26825.535367 eV Core-core repulsion = 22996.204344 eV Total energy + Delta-G solvation = -3829.331024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.88766 -40.61495 -39.38212 -37.75747 -36.73244 -34.77184 -33.79415 -33.05629 -32.27473 -31.66470 -29.47960 -27.18890 -26.32637 -24.97045 -24.67826 -23.86529 -22.37602 -21.52666 -20.21469 -19.29323 -18.58003 -18.15673 -17.71828 -16.85377 -16.76277 -16.48473 -16.29110 -15.88630 -15.63982 -15.24365 -15.09037 -14.94769 -14.66320 -14.40355 -14.09334 -13.97392 -13.74608 -13.63589 -13.28414 -13.15975 -13.01762 -12.76313 -12.68644 -12.34064 -12.24986 -12.05330 -11.91667 -11.73079 -11.52398 -11.45470 -11.17806 -11.08264 -11.03841 -10.67165 -10.49693 -10.26574 -10.07462 -8.62777 -7.84145 -5.28667 -0.64619 -0.18775 0.82674 1.48257 1.50578 1.58438 1.64787 1.99551 2.53117 2.56152 3.11752 3.30766 3.49498 3.51893 3.60059 3.60865 3.85956 3.93409 4.00744 4.07206 4.14927 4.37005 4.43655 4.49018 4.64403 4.69002 4.71769 4.72926 4.86566 4.90468 4.99461 5.06320 5.15290 5.16549 5.22165 5.31976 5.37463 5.45707 5.51590 5.61071 5.71215 5.82205 6.37875 6.42638 6.54981 7.02876 7.18412 7.90512 8.41714 9.21861 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.002778 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.834622 B =10076.430833 C =11746.360263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 H 0.085 0.915 4 N -0.707 5.707 5 C 0.567 3.433 6 O -0.566 6.566 7 C -0.181 4.181 8 C 0.142 3.858 9 N -0.485 5.485 10 C 0.141 3.859 11 C -0.098 4.098 12 Cl -0.036 7.036 13 C -0.012 4.012 14 C -0.099 4.099 15 H 0.067 0.933 16 C -0.098 4.098 17 C -0.132 4.132 18 C 0.174 3.826 19 N -0.608 5.608 20 C -0.257 4.257 21 H 0.071 0.929 22 C -0.051 4.051 23 N -0.935 5.935 24 Si 0.961 3.039 25 H -0.290 1.290 26 H -0.299 1.299 27 H -0.265 1.265 28 C 0.149 3.851 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.408 0.592 33 H 0.180 0.820 34 H 0.197 0.803 35 H 0.158 0.842 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.068 0.932 40 H -0.003 1.003 41 H 0.048 0.952 42 H 0.248 0.752 43 H 0.024 0.976 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 10.252 -18.959 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.104 0.896 4 N -0.358 5.358 5 C 0.354 3.646 6 O -0.446 6.446 7 C -0.186 4.186 8 C -0.016 4.016 9 N -0.193 5.193 10 C -0.016 4.016 11 C -0.127 4.127 12 Cl -0.007 7.007 13 C -0.039 4.039 14 C -0.119 4.119 15 H 0.086 0.914 16 C -0.136 4.136 17 C -0.171 4.171 18 C 0.048 3.952 19 N -0.331 5.331 20 C -0.388 4.388 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.581 5.581 24 Si 0.790 3.210 25 H -0.217 1.217 26 H -0.226 1.226 27 H -0.190 1.190 28 C 0.024 3.976 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.246 0.754 33 H 0.197 0.803 34 H 0.214 0.786 35 H 0.176 0.824 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.015 0.985 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.511 10.145 -18.931 21.624 hybrid contribution 0.283 -0.446 0.494 0.723 sum 2.794 9.699 -18.437 21.019 Atomic orbital electron populations 1.22219 0.94634 1.02542 1.02467 1.20928 0.94576 0.96467 0.82555 0.89646 1.46081 1.65839 1.14674 1.09203 1.18063 0.77281 0.86054 0.83195 1.90763 1.51938 1.16571 1.85344 1.20913 1.06825 0.96076 0.94803 1.23410 0.89943 0.90288 0.97946 1.67965 1.13609 1.38422 0.99327 1.23516 0.91893 0.89785 0.96425 1.22020 1.06077 0.95166 0.89445 1.98407 1.95884 1.79482 1.26960 1.21742 0.91124 1.01480 0.89567 1.21755 1.00337 0.96187 0.93647 0.91419 1.21429 1.00634 0.98558 0.92950 1.22017 1.00049 0.96856 0.98163 1.20612 0.95075 0.90475 0.89049 1.44270 1.65520 1.22219 1.01121 1.19532 1.18475 0.95044 1.05711 0.91167 1.25732 0.98738 0.99953 1.00172 1.70193 1.29772 1.40030 1.18092 0.85348 0.78886 0.78625 0.78188 1.21703 1.22563 1.18963 1.21121 0.96591 0.91570 0.88312 0.92142 0.90337 0.92890 0.75361 0.80268 0.78611 0.82416 0.90651 0.91619 0.93314 0.91382 0.98535 0.93347 0.94303 0.95835 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 8.78 71.98 0.63 -3.23 16 2 C 0.16 3.95 2.41 44.99 0.11 4.06 16 3 H 0.09 2.20 7.58 -2.39 -0.02 2.19 16 4 N -0.71 -16.20 4.95 -445.43 -2.21 -18.41 16 5 C 0.57 13.88 7.75 86.79 0.67 14.56 16 6 O -0.57 -17.16 16.08 -3.87 -0.06 -17.22 16 7 C -0.18 -3.70 5.89 -20.00 -0.12 -3.82 16 8 C 0.14 2.68 10.71 85.04 0.91 3.59 16 9 N -0.49 -9.35 10.34 -194.67 -2.01 -11.36 16 10 C 0.14 2.16 10.97 84.72 0.93 3.09 16 11 C -0.10 -1.56 6.34 22.38 0.14 -1.42 16 12 Cl -0.04 -0.50 28.98 -2.72 -0.08 -0.58 16 13 C -0.01 -0.23 9.52 22.75 0.22 -0.01 16 14 C -0.10 -2.86 2.33 -10.72 -0.02 -2.89 16 15 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 16 C -0.10 -2.81 4.78 30.62 0.15 -2.66 16 17 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 18 C 0.17 8.02 5.31 86.37 0.46 8.48 16 19 N -0.61 -28.48 2.99 -699.09 -2.09 -30.57 16 20 C -0.26 -13.40 9.58 84.03 0.81 -12.60 16 21 H 0.07 3.51 7.89 -2.91 -0.02 3.48 16 22 C -0.05 -2.74 4.90 84.86 0.42 -2.32 16 23 N -0.93 -54.20 11.22 21.65 0.24 -53.96 16 24 Si 0.96 43.77 29.59 68.60 2.03 45.80 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 C 0.15 5.38 5.30 86.36 0.46 5.84 16 29 H 0.06 1.53 6.32 -2.39 -0.02 1.51 16 30 H 0.08 1.76 6.46 -2.39 -0.02 1.75 16 31 H 0.05 1.29 8.14 -2.38 -0.02 1.28 16 32 H 0.41 8.39 5.04 -92.70 -0.47 7.92 16 33 H 0.18 2.83 6.42 -2.91 -0.02 2.82 16 34 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.16 2.92 7.74 -2.91 -0.02 2.90 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.07 1.85 6.50 -2.39 -0.02 1.84 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.05 2.58 6.06 -2.39 -0.01 2.57 16 42 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 43 H 0.02 0.88 6.18 -2.39 -0.01 0.86 16 44 H 0.06 1.86 6.52 -2.39 -0.02 1.84 16 Total: -1.00 -65.17 364.06 2.33 -62.84 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.57 Total: 17.23 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.94 Total: 6.23 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -6.07 Total: -114.31 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.06 Total: -17.22 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -65.17 2.33 -62.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025557424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.649 kcal (2) G-P(sol) polarization free energy of solvation -65.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds