Wall clock time and date at job start Tue Mar 31 2020 21:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47038 * 2 1 4 4 N 1.46496 * 109.47151 * 119.99827 * 2 1 3 5 5 C 1.34773 * 120.00190 * 274.72283 * 4 2 1 6 6 O 1.21522 * 119.99824 * 0.28219 * 5 4 2 7 7 C 1.48106 * 120.00118 * 180.27125 * 5 4 2 8 8 C 1.39353 * 119.70852 * 180.02562 * 7 5 4 9 9 C 1.38518 * 119.07883 * 179.97438 * 8 7 5 10 10 C 1.38769 * 118.47937 * 0.02562 * 9 8 7 11 11 Cl 1.73598 * 120.33956 * 180.02562 * 10 9 8 12 12 C 1.38727 * 119.32340 * 359.97438 * 10 9 8 13 13 N 1.31490 * 120.87776 * 359.73966 * 12 10 9 14 14 C 1.53005 * 109.47299 * 240.00031 * 2 1 3 15 15 H 1.09000 * 109.49817 * 184.93583 * 14 2 1 16 16 C 1.53036 * 109.49786 * 64.83586 * 14 2 1 17 17 C 1.53045 * 109.54024 * 178.68374 * 16 14 2 18 18 C 1.53191 * 109.30717 * 61.36764 * 17 16 14 19 19 N 1.46933 * 108.77770 * 305.36348 * 18 17 16 20 20 C 1.36935 * 120.62880 * 233.59052 * 19 18 17 21 21 H 1.08000 * 119.99446 * 151.85269 * 20 19 18 22 22 C 1.38812 * 120.00417 * 331.84809 * 20 19 18 23 23 N 1.31613 * 119.99677 * 343.06749 * 22 20 19 24 24 Si 1.86791 * 120.00073 * 163.06341 * 22 20 19 25 25 H 1.48507 * 109.47352 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47042 * 120.00002 * 24 22 20 27 27 H 1.48499 * 109.47543 * 240.00178 * 24 22 20 28 28 C 1.46918 * 118.73363 * 53.61157 * 19 18 17 29 29 H 1.09004 * 109.47057 * 60.00090 * 1 2 3 30 30 H 1.08990 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47263 * 300.00442 * 1 2 3 32 32 H 0.97003 * 119.99605 * 95.00366 * 4 2 1 33 33 H 1.08000 * 120.45613 * 0.02562 * 8 7 5 34 34 H 1.08005 * 120.76240 * 180.02562 * 9 8 7 35 35 H 1.08001 * 119.55935 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46581 * 298.71035 * 16 14 2 37 37 H 1.09009 * 109.45945 * 58.66389 * 16 14 2 38 38 H 1.08996 * 109.49687 * 301.41810 * 17 16 14 39 39 H 1.08995 * 109.52350 * 181.33570 * 17 16 14 40 40 H 1.08999 * 109.58334 * 185.57970 * 18 17 16 41 41 H 1.08993 * 109.70729 * 65.22594 * 18 17 16 42 42 H 0.97003 * 120.00141 * 180.02562 * 23 22 20 43 43 H 1.09004 * 109.58608 * 186.60552 * 28 19 18 44 44 H 1.09002 * 109.59247 * 66.18161 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8632 1.1622 2.4103 7 6 2.6517 -0.7136 3.5635 8 6 2.7875 -0.0112 4.7594 9 6 3.2552 -0.6758 5.8811 10 6 3.5723 -2.0221 5.7684 11 17 4.1619 -2.9023 7.1436 12 6 3.4123 -2.6577 4.5457 13 7 2.9608 -2.0028 3.4987 14 6 2.0400 -0.7213 -1.2493 15 1 3.1265 -0.7987 -1.2066 16 6 1.6320 0.0665 -2.4963 17 6 2.1698 -0.6367 -3.7447 18 6 1.5608 -2.0392 -3.8380 19 7 1.8249 -2.7541 -2.5818 20 6 2.4275 -3.9837 -2.5922 21 1 3.0180 -4.3027 -1.7461 22 6 2.2794 -4.8201 -3.6901 23 7 1.3173 -4.5990 -4.5606 24 14 3.4455 -6.2591 -3.9320 25 1 4.4314 -6.2895 -2.8218 26 1 2.6721 -7.5267 -3.9414 27 1 4.1598 -6.1055 -5.2248 28 6 1.4295 -2.1248 -1.3144 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2490 -1.6317 1.1525 33 1 2.5307 1.0366 4.8111 34 1 3.3705 -0.1581 6.8220 35 1 3.6575 -3.7054 4.4537 36 1 0.5448 0.1224 -2.5509 37 1 2.0448 1.0739 -2.4406 38 1 3.2550 -0.7149 -3.6791 39 1 1.8994 -0.0628 -4.6310 40 1 2.0145 -2.5800 -4.6685 41 1 0.4850 -1.9630 -3.9959 42 1 1.2135 -5.1837 -5.3276 43 1 1.7967 -2.7220 -0.4797 44 1 0.3430 -2.0533 -1.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025602525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:45 Heat of formation + Delta-G solvation = 7.023669 kcal Electronic energy + Delta-G solvation = -26767.309922 eV Core-core repulsion = 22938.725348 eV Total energy + Delta-G solvation = -3828.584573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.97370 -39.48175 -37.97424 -37.09035 -35.25405 -33.32603 -32.77931 -31.83914 -30.67029 -30.43918 -28.08567 -25.33021 -25.28086 -24.19581 -23.49936 -22.19294 -21.08604 -20.21047 -18.84164 -18.18704 -17.34579 -16.90920 -16.57933 -15.73398 -15.39292 -15.26671 -14.85735 -14.53075 -14.30690 -14.10175 -13.82438 -13.69461 -13.44334 -13.08457 -12.93021 -12.60523 -12.36821 -12.32644 -12.23560 -11.80163 -11.76074 -11.63502 -10.99582 -10.91921 -10.58276 -10.48568 -10.43851 -10.37197 -10.16456 -10.09821 -9.90437 -9.84458 -9.59115 -9.43705 -9.37990 -8.93648 -8.45660 -6.64948 -5.78283 -3.20766 0.09596 0.68067 1.49389 2.47238 3.02784 3.37103 3.45275 3.47205 3.47734 3.82365 4.19776 4.34252 4.47000 4.49365 4.70979 5.03434 5.22524 5.23042 5.35785 5.40340 5.42638 5.43767 5.58471 5.69154 5.71752 5.86049 5.93415 6.01853 6.12416 6.23366 6.25660 6.34784 6.49335 6.59994 6.62049 6.71258 6.79441 6.87653 6.99581 7.18233 7.41198 7.59782 7.68636 7.80564 8.13795 8.45641 9.21995 9.85472 10.42207 11.30025 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.002962 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.292285 B = 9450.549243 C =11595.183958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.084 0.916 4 N -0.695 5.695 5 C 0.568 3.432 6 O -0.537 6.537 7 C 0.087 3.913 8 C -0.101 4.101 9 C -0.073 4.073 10 C -0.074 4.074 11 Cl -0.048 7.048 12 C 0.117 3.883 13 N -0.439 5.439 14 C -0.113 4.113 15 H 0.073 0.927 16 C -0.100 4.100 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.151 3.849 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.414 0.586 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.049 0.951 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 8.690 19.249 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.102 0.898 4 N -0.346 5.346 5 C 0.352 3.648 6 O -0.414 6.414 7 C -0.052 4.052 8 C -0.122 4.122 9 C -0.099 4.099 10 C -0.103 4.103 11 Cl -0.019 7.019 12 C -0.043 4.043 13 N -0.150 5.150 14 C -0.134 4.134 15 H 0.091 0.909 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.044 3.956 19 N -0.313 5.313 20 C -0.381 4.381 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.218 1.218 27 H -0.216 1.216 28 C 0.024 3.976 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.251 0.749 33 H 0.176 0.824 34 H 0.170 0.830 35 H 0.191 0.809 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.608 8.915 18.401 20.613 hybrid contribution 0.879 -0.953 0.783 1.514 sum 3.486 7.962 19.184 21.061 Atomic orbital electron populations 1.22260 0.95148 1.02919 1.01980 1.21143 0.94390 0.96778 0.83408 0.89810 1.46090 1.64375 1.15083 1.09029 1.17751 0.78284 0.86042 0.82690 1.90779 1.51083 1.14987 1.84588 1.21451 0.98600 0.90336 0.94772 1.22157 0.96552 1.02412 0.91108 1.21573 0.96077 0.92270 0.99992 1.22384 1.02699 0.94179 0.91049 1.98404 1.86399 1.75401 1.41703 1.22898 0.94648 1.00844 0.85959 1.67772 1.08744 1.07992 1.30469 1.21962 1.00999 0.98114 0.92312 0.90896 1.21421 1.00528 0.97188 0.94674 1.22176 1.00610 0.99596 0.95755 1.20787 0.96616 0.88012 0.90224 1.44025 1.69756 1.17616 0.99893 1.19217 1.23132 0.92040 1.03738 0.91685 1.25029 0.97404 0.97636 0.99534 1.70044 1.30227 1.39513 1.14849 0.86255 0.80683 0.82269 0.77766 1.20243 1.21759 1.21606 1.21004 0.96154 0.90330 0.90115 0.91209 0.91435 0.92865 0.74882 0.82400 0.82981 0.80895 0.92200 0.93527 0.92808 0.93220 0.89635 0.96432 0.93727 0.93275 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 8.76 37.16 0.33 -1.97 16 2 C 0.15 2.14 2.36 -67.93 -0.16 1.98 16 3 H 0.08 1.25 7.57 -51.93 -0.39 0.86 16 4 N -0.70 -9.84 5.00 -54.67 -0.27 -10.11 16 5 C 0.57 8.04 7.78 -12.21 -0.09 7.95 16 6 O -0.54 -8.65 15.98 5.35 0.09 -8.56 16 7 C 0.09 1.05 6.75 -83.01 -0.56 0.49 16 8 C -0.10 -0.96 9.63 -39.06 -0.38 -1.34 16 9 C -0.07 -0.56 9.97 -39.28 -0.39 -0.95 16 10 C -0.07 -0.61 6.35 -39.20 -0.25 -0.86 16 11 Cl -0.05 -0.35 28.99 -51.86 -1.50 -1.85 16 12 C 0.12 1.11 10.98 -17.52 -0.19 0.91 16 13 N -0.44 -5.18 9.54 -9.77 -0.09 -5.27 16 14 C -0.11 -1.87 2.27 -90.50 -0.21 -2.08 16 15 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.10 -1.63 4.89 -26.69 -0.13 -1.76 16 17 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 18 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 19 N -0.59 -14.38 2.99 -172.32 -0.52 -14.89 16 20 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 21 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 23 N -0.90 -25.91 11.20 55.49 0.62 -25.29 16 24 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.15 2.99 5.26 -3.71 -0.02 2.97 16 29 H 0.07 0.92 6.59 -51.93 -0.34 0.58 16 30 H 0.07 0.98 6.23 -51.93 -0.32 0.66 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.41 5.87 6.60 -40.82 -0.27 5.60 16 33 H 0.16 1.35 7.64 -52.49 -0.40 0.95 16 34 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 35 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.06 0.96 6.63 -51.93 -0.34 0.61 16 37 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.05 0.96 6.75 -51.93 -0.35 0.61 16 44 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -30.40 366.77 -9.63 -40.03 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.98 Total: 4.44 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.47 Total: -0.47 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.26 Total: -55.57 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.40 -9.63 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025602525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.057 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds