Wall clock time and date at job start Tue Mar 31 2020 21:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47038 * 2 1 4 4 N 1.46496 * 109.47151 * 119.99827 * 2 1 3 5 5 C 1.34773 * 120.00190 * 274.72283 * 4 2 1 6 6 O 1.21522 * 119.99824 * 0.28219 * 5 4 2 7 7 C 1.48106 * 120.00118 * 180.27125 * 5 4 2 8 8 C 1.39353 * 119.70852 * 180.02562 * 7 5 4 9 9 C 1.38518 * 119.07883 * 179.97438 * 8 7 5 10 10 C 1.38769 * 118.47937 * 0.02562 * 9 8 7 11 11 Cl 1.73598 * 120.33956 * 180.02562 * 10 9 8 12 12 C 1.38727 * 119.32340 * 359.97438 * 10 9 8 13 13 N 1.31490 * 120.87776 * 359.73966 * 12 10 9 14 14 C 1.53005 * 109.47299 * 240.00031 * 2 1 3 15 15 H 1.09000 * 109.49817 * 184.93583 * 14 2 1 16 16 C 1.53036 * 109.49786 * 64.83586 * 14 2 1 17 17 C 1.53045 * 109.54024 * 178.68374 * 16 14 2 18 18 C 1.53191 * 109.30717 * 61.36764 * 17 16 14 19 19 N 1.46933 * 108.77770 * 305.36348 * 18 17 16 20 20 C 1.36935 * 120.62880 * 233.59052 * 19 18 17 21 21 H 1.08000 * 119.99446 * 151.85269 * 20 19 18 22 22 C 1.38812 * 120.00417 * 331.84809 * 20 19 18 23 23 N 1.31613 * 119.99677 * 343.06749 * 22 20 19 24 24 Si 1.86791 * 120.00073 * 163.06341 * 22 20 19 25 25 H 1.48507 * 109.47352 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47042 * 120.00002 * 24 22 20 27 27 H 1.48499 * 109.47543 * 240.00178 * 24 22 20 28 28 C 1.46918 * 118.73363 * 53.61157 * 19 18 17 29 29 H 1.09004 * 109.47057 * 60.00090 * 1 2 3 30 30 H 1.08990 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47263 * 300.00442 * 1 2 3 32 32 H 0.97003 * 119.99605 * 95.00366 * 4 2 1 33 33 H 1.08000 * 120.45613 * 0.02562 * 8 7 5 34 34 H 1.08005 * 120.76240 * 180.02562 * 9 8 7 35 35 H 1.08001 * 119.55935 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46581 * 298.71035 * 16 14 2 37 37 H 1.09009 * 109.45945 * 58.66389 * 16 14 2 38 38 H 1.08996 * 109.49687 * 301.41810 * 17 16 14 39 39 H 1.08995 * 109.52350 * 181.33570 * 17 16 14 40 40 H 1.08999 * 109.58334 * 185.57970 * 18 17 16 41 41 H 1.08993 * 109.70729 * 65.22594 * 18 17 16 42 42 H 0.97003 * 120.00141 * 180.02562 * 23 22 20 43 43 H 1.09004 * 109.58608 * 186.60552 * 28 19 18 44 44 H 1.09002 * 109.59247 * 66.18161 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8632 1.1622 2.4103 7 6 2.6517 -0.7136 3.5635 8 6 2.7875 -0.0112 4.7594 9 6 3.2552 -0.6758 5.8811 10 6 3.5723 -2.0221 5.7684 11 17 4.1619 -2.9023 7.1436 12 6 3.4123 -2.6577 4.5457 13 7 2.9608 -2.0028 3.4987 14 6 2.0400 -0.7213 -1.2493 15 1 3.1265 -0.7987 -1.2066 16 6 1.6320 0.0665 -2.4963 17 6 2.1698 -0.6367 -3.7447 18 6 1.5608 -2.0392 -3.8380 19 7 1.8249 -2.7541 -2.5818 20 6 2.4275 -3.9837 -2.5922 21 1 3.0180 -4.3027 -1.7461 22 6 2.2794 -4.8201 -3.6901 23 7 1.3173 -4.5990 -4.5606 24 14 3.4455 -6.2591 -3.9320 25 1 4.4314 -6.2895 -2.8218 26 1 2.6721 -7.5267 -3.9414 27 1 4.1598 -6.1055 -5.2248 28 6 1.4295 -2.1248 -1.3144 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2490 -1.6317 1.1525 33 1 2.5307 1.0366 4.8111 34 1 3.3705 -0.1581 6.8220 35 1 3.6575 -3.7054 4.4537 36 1 0.5448 0.1224 -2.5509 37 1 2.0448 1.0739 -2.4406 38 1 3.2550 -0.7149 -3.6791 39 1 1.8994 -0.0628 -4.6310 40 1 2.0145 -2.5800 -4.6685 41 1 0.4850 -1.9630 -3.9959 42 1 1.2135 -5.1837 -5.3276 43 1 1.7967 -2.7220 -0.4797 44 1 0.3430 -2.0533 -1.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025602525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:44 Heat of formation + Delta-G solvation = -10.908901 kcal Electronic energy + Delta-G solvation = -26768.087536 eV Core-core repulsion = 22938.725348 eV Total energy + Delta-G solvation = -3829.362188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.84431 -40.57446 -39.36439 -37.74304 -36.72170 -34.75810 -33.76502 -32.85188 -32.27988 -31.83098 -29.47262 -27.21232 -26.28298 -25.03795 -24.62844 -23.86651 -22.41317 -21.46196 -20.23240 -19.26831 -18.58481 -18.13250 -17.58204 -16.88695 -16.77727 -16.38723 -16.13714 -15.90135 -15.61083 -15.22821 -15.07095 -14.97988 -14.67781 -14.39106 -14.06999 -13.95013 -13.74312 -13.59722 -13.30817 -13.07113 -13.03264 -12.78523 -12.70474 -12.39085 -12.25012 -12.04986 -11.93176 -11.71495 -11.52860 -11.43090 -11.20101 -11.06016 -11.04664 -10.71747 -10.51290 -10.26568 -10.01185 -8.63155 -7.85082 -5.30041 -0.68406 0.00084 0.84082 1.46264 1.48617 1.53340 1.58661 2.01024 2.52281 2.62702 2.99150 3.29530 3.55643 3.57707 3.63398 3.76336 3.91039 3.94141 3.99909 4.06730 4.36173 4.40870 4.48141 4.56574 4.64740 4.68306 4.70439 4.78330 4.86960 4.89839 4.97400 5.05821 5.15479 5.21440 5.23646 5.30736 5.36356 5.45525 5.50560 5.59793 5.69781 5.81542 6.29574 6.41707 6.59516 7.04785 7.17651 7.89400 8.40735 9.20998 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.002962 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.292285 B = 9450.549243 C =11595.183958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.088 0.912 4 N -0.698 5.698 5 C 0.569 3.431 6 O -0.561 6.561 7 C 0.062 3.938 8 C -0.098 4.098 9 C -0.062 4.062 10 C -0.068 4.068 11 Cl -0.034 7.034 12 C 0.109 3.891 13 N -0.462 5.462 14 C -0.098 4.098 15 H 0.063 0.937 16 C -0.097 4.097 17 C -0.131 4.131 18 C 0.174 3.826 19 N -0.609 5.609 20 C -0.259 4.259 21 H 0.066 0.934 22 C -0.050 4.050 23 N -0.934 5.934 24 Si 0.963 3.037 25 H -0.267 1.267 26 H -0.293 1.293 27 H -0.291 1.291 28 C 0.152 3.848 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.413 0.587 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.049 0.951 41 H -0.003 1.003 42 H 0.249 0.751 43 H 0.047 0.953 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 9.654 21.375 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.106 0.894 4 N -0.348 5.348 5 C 0.354 3.646 6 O -0.440 6.440 7 C -0.075 4.075 8 C -0.119 4.119 9 C -0.088 4.088 10 C -0.097 4.097 11 Cl -0.005 7.005 12 C -0.052 4.052 13 N -0.173 5.173 14 C -0.118 4.118 15 H 0.082 0.918 16 C -0.134 4.134 17 C -0.170 4.170 18 C 0.048 3.952 19 N -0.332 5.332 20 C -0.390 4.390 21 H 0.083 0.917 22 C -0.245 4.245 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.191 1.191 26 H -0.220 1.220 27 H -0.218 1.218 28 C 0.026 3.974 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.250 0.750 33 H 0.184 0.816 34 H 0.202 0.798 35 H 0.206 0.794 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.015 0.985 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.514 9.895 20.555 23.082 hybrid contribution 0.603 -1.289 0.242 1.443 sum 4.117 8.606 20.797 22.881 Atomic orbital electron populations 1.22204 0.94542 1.02398 1.02560 1.20994 0.94708 0.96500 0.82658 0.89403 1.46088 1.64527 1.14993 1.09161 1.18056 0.77580 0.85819 0.83123 1.90752 1.52224 1.15908 1.85074 1.21241 1.00724 0.90846 0.94735 1.22284 0.96080 1.02774 0.90730 1.21897 0.94398 0.91944 1.00541 1.22449 1.01740 0.94532 0.91029 1.98416 1.86115 1.75192 1.40821 1.23187 0.94457 1.01532 0.86033 1.67683 1.09679 1.08159 1.31800 1.21735 1.00094 0.96187 0.93810 0.91809 1.21415 1.00992 0.98183 0.92850 1.22012 0.99865 0.96963 0.98190 1.20621 0.95311 0.90267 0.88984 1.44283 1.69981 1.17401 1.01532 1.19530 1.22837 0.92967 1.03633 0.91670 1.25747 0.98882 1.00304 0.99600 1.70190 1.31893 1.40633 1.15325 0.85275 0.78856 0.79122 0.77622 1.19083 1.21979 1.21817 1.21097 0.96164 0.91987 0.88136 0.90193 0.92444 0.92704 0.75019 0.81561 0.79800 0.79427 0.91593 0.90482 0.93369 0.91105 0.93213 0.98471 0.94214 0.93434 0.95845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.23 8.76 71.98 0.63 -3.60 16 2 C 0.16 4.35 2.36 44.99 0.11 4.46 16 3 H 0.09 2.46 7.57 -2.38 -0.02 2.44 16 4 N -0.70 -19.43 5.00 -445.16 -2.23 -21.66 16 5 C 0.57 15.79 7.78 86.86 0.68 16.47 16 6 O -0.56 -17.61 15.98 -3.78 -0.06 -17.67 16 7 C 0.06 1.44 6.75 41.90 0.28 1.72 16 8 C -0.10 -1.69 9.63 22.61 0.22 -1.48 16 9 C -0.06 -0.78 9.97 22.46 0.22 -0.55 16 10 C -0.07 -0.98 6.35 22.51 0.14 -0.83 16 11 Cl -0.03 -0.42 28.99 -2.72 -0.08 -0.50 16 12 C 0.11 1.91 10.98 84.86 0.93 2.84 16 13 N -0.46 -10.60 9.54 -184.82 -1.76 -12.36 16 14 C -0.10 -3.14 2.27 -10.72 -0.02 -3.16 16 15 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 16 C -0.10 -2.95 4.89 30.62 0.15 -2.80 16 17 C -0.13 -4.80 6.08 30.67 0.19 -4.61 16 18 C 0.17 8.32 5.30 86.36 0.46 8.78 16 19 N -0.61 -30.14 2.99 -699.10 -2.09 -32.23 16 20 C -0.26 -14.19 9.58 84.03 0.81 -13.38 16 21 H 0.07 3.49 7.89 -2.91 -0.02 3.46 16 22 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 23 N -0.93 -55.29 11.20 21.65 0.24 -55.05 16 24 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 28 C 0.15 6.03 5.26 86.36 0.45 6.48 16 29 H 0.08 1.95 6.59 -2.38 -0.02 1.94 16 30 H 0.06 1.64 6.23 -2.39 -0.01 1.62 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.41 11.71 6.60 -92.71 -0.61 11.10 16 33 H 0.17 2.55 7.64 -2.91 -0.02 2.53 16 34 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.07 1.97 6.63 -2.39 -0.02 1.95 16 37 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 2.72 6.06 -2.39 -0.01 2.71 16 41 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.05 1.87 6.75 -2.39 -0.02 1.85 16 44 H 0.02 0.96 6.06 -2.39 -0.01 0.94 16 Total: -1.00 -66.58 366.77 2.13 -64.45 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.42 Total: 20.15 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.66 Total: 7.95 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -5.84 Total: -121.30 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.06 Total: -17.67 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -66.58 2.13 -64.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025602525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.546 kcal (2) G-P(sol) polarization free energy of solvation -66.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds