Wall clock time and date at job start Tue Mar 31 2020 21:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47766 * 2 1 4 4 N 1.46506 * 109.47256 * 120.00637 * 2 1 3 5 5 C 1.34775 * 119.99693 * 274.99719 * 4 2 1 6 6 O 1.21535 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.48077 * 120.00085 * 179.97438 * 5 4 2 8 8 N 1.32777 * 119.73769 * 0.02562 * 7 5 4 9 9 C 1.31465 * 121.65579 * 179.97438 * 8 7 5 10 10 C 1.38636 * 120.94481 * 0.02562 * 9 8 7 11 11 C 1.38518 * 119.37028 * 0.02562 * 10 9 8 12 12 C 1.38804 * 118.47969 * 359.72666 * 11 10 9 13 13 Cl 1.73601 * 120.48796 * 180.26347 * 12 11 10 14 14 C 1.53007 * 109.47128 * 240.00334 * 2 1 3 15 15 H 1.08999 * 109.49510 * 300.06423 * 14 2 1 16 16 C 1.53041 * 109.49837 * 60.15983 * 14 2 1 17 17 C 1.53035 * 109.53845 * 181.31657 * 16 14 2 18 18 C 1.53188 * 109.31277 * 298.63967 * 17 16 14 19 19 N 1.46922 * 108.78022 * 54.63629 * 18 17 16 20 20 C 1.36933 * 120.63517 * 126.36795 * 19 18 17 21 21 H 1.08006 * 119.99868 * 331.84898 * 20 19 18 22 22 C 1.38814 * 120.00113 * 151.84101 * 20 19 18 23 23 N 1.31614 * 120.00059 * 343.08675 * 22 20 19 24 24 Si 1.86796 * 119.99690 * 163.07981 * 22 20 19 25 25 H 1.48499 * 109.47591 * 60.00328 * 24 22 20 26 26 H 1.48502 * 109.46965 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47317 * 300.00190 * 24 22 20 28 28 C 1.46930 * 118.73410 * 306.39228 * 19 18 17 29 29 H 1.08996 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46882 * 59.99392 * 1 2 3 31 31 H 1.09001 * 109.46788 * 300.00022 * 1 2 3 32 32 H 0.96998 * 120.00207 * 94.99683 * 4 2 1 33 33 H 1.08006 * 119.52769 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.31834 * 180.02562 * 10 9 8 35 35 H 1.08009 * 120.75966 * 180.02562 * 11 10 9 36 36 H 1.09000 * 109.46169 * 301.34037 * 16 14 2 37 37 H 1.09004 * 109.45477 * 61.29701 * 16 14 2 38 38 H 1.08998 * 109.49805 * 178.68761 * 17 16 14 39 39 H 1.09002 * 109.52407 * 58.60492 * 17 16 14 40 40 H 1.09007 * 109.58633 * 294.84383 * 18 17 16 41 41 H 1.09004 * 109.70489 * 174.49388 * 18 17 16 42 42 H 0.97003 * 119.99878 * 180.02562 * 23 22 20 43 43 H 1.09006 * 109.58542 * 293.81599 * 28 19 18 44 44 H 1.09003 * 109.58352 * 173.40005 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 2.1472 -0.0185 2.3571 6 8 1.8577 1.1606 2.4118 7 6 2.6402 -0.7167 3.5663 8 7 2.9545 -2.0051 3.5007 9 6 3.3961 -2.6618 4.5504 10 6 3.5507 -2.0289 5.7742 11 6 3.2339 -0.6853 5.8889 12 6 2.7748 -0.0151 4.7635 13 17 2.3691 1.6708 4.8467 14 6 2.0400 -0.7212 -1.2493 15 1 1.6760 -1.7486 -1.2504 16 6 1.5335 0.0021 -2.4993 17 6 2.0159 -0.7373 -3.7493 18 6 3.5475 -0.7379 -3.7782 19 7 4.0442 -1.3005 -2.5151 20 6 4.9300 -2.3447 -2.5169 21 1 4.9347 -3.0474 -3.3371 22 6 5.8220 -2.5001 -1.4647 23 7 6.0562 -1.4958 -0.6469 24 14 6.6896 -4.1345 -1.2095 25 1 7.4951 -4.4608 -2.4136 26 1 7.5824 -4.0415 -0.0265 27 1 5.6807 -5.2008 -0.9850 28 6 3.5719 -0.7216 -1.2499 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6319 1.1525 33 1 3.6412 -3.7097 4.4584 34 1 3.9147 -2.5781 6.6299 35 1 3.3462 -0.1698 6.8314 36 1 0.4438 0.0254 -2.4889 37 1 1.9182 1.0220 -2.5095 38 1 1.6354 -0.2350 -4.6387 39 1 1.6520 -1.7646 -3.7280 40 1 3.9112 0.2834 -3.8914 41 1 3.8991 -1.3455 -4.6121 42 1 6.6798 -1.6043 0.0882 43 1 3.9377 0.3010 -1.1569 44 1 3.9376 -1.3199 -0.4154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025603331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:52 Heat of formation + Delta-G solvation = 15.998249 kcal Electronic energy + Delta-G solvation = -27649.933790 eV Core-core repulsion = 23821.738384 eV Total energy + Delta-G solvation = -3828.195406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.66330 -39.13780 -37.69577 -36.57500 -35.03851 -33.17726 -32.72831 -31.54461 -30.81174 -29.72762 -28.61576 -25.35470 -24.89548 -23.75860 -23.07269 -21.96888 -20.86474 -20.06557 -19.16025 -17.94454 -17.06985 -16.71834 -16.39724 -15.50568 -15.27341 -15.11368 -14.84932 -14.17893 -13.94234 -13.78695 -13.55830 -13.42760 -13.20119 -13.07647 -12.60102 -12.56005 -12.39178 -12.11469 -12.02809 -11.87608 -11.45573 -11.21507 -10.98303 -10.85399 -10.65046 -10.40326 -10.21378 -10.15755 -10.06010 -10.01340 -9.85899 -9.56273 -9.39680 -9.19983 -9.12463 -8.59724 -8.42167 -6.61794 -5.74592 -3.17479 0.43160 0.86223 2.00198 2.84378 3.29717 3.38999 3.44484 3.45844 3.76555 4.11758 4.48688 4.51475 4.60102 4.65153 5.03535 5.10481 5.21096 5.38019 5.53562 5.56705 5.59396 5.63895 5.66716 5.68047 5.83737 5.87247 6.12181 6.19097 6.21473 6.24583 6.36351 6.47181 6.50686 6.54695 6.71537 6.82046 6.90774 6.93898 7.06308 7.40277 7.49075 7.71641 7.82574 7.91569 8.48678 8.49209 9.24979 9.88847 10.46434 11.32841 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.004473 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.438680 B = 6258.530192 C = 8207.212299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.086 0.914 4 N -0.691 5.691 5 C 0.565 3.435 6 O -0.521 6.521 7 C 0.097 3.903 8 N -0.437 5.437 9 C 0.102 3.898 10 C -0.143 4.143 11 C -0.079 4.079 12 C -0.042 4.042 13 Cl -0.018 7.018 14 C -0.120 4.120 15 H 0.068 0.932 16 C -0.101 4.101 17 C -0.133 4.133 18 C 0.143 3.857 19 N -0.592 5.592 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.005 3.995 23 N -0.898 5.898 24 Si 0.899 3.101 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.284 1.284 28 C 0.180 3.820 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.411 0.589 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.051 0.949 42 H 0.253 0.747 43 H 0.016 0.984 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 0.330 11.869 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.104 0.896 4 N -0.341 5.341 5 C 0.348 3.652 6 O -0.397 6.397 7 C -0.043 4.043 8 N -0.148 5.148 9 C -0.058 4.058 10 C -0.163 4.163 11 C -0.105 4.105 12 C -0.072 4.072 13 Cl 0.011 6.989 14 C -0.141 4.141 15 H 0.086 0.914 16 C -0.139 4.139 17 C -0.172 4.172 18 C 0.017 3.983 19 N -0.314 5.314 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.194 4.194 23 N -0.542 5.542 24 Si 0.729 3.271 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.210 1.210 28 C 0.054 3.946 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.248 0.752 33 H 0.186 0.814 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.034 0.966 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.692 0.934 11.189 14.833 hybrid contribution 0.856 -0.832 1.091 1.617 sum -8.836 0.102 12.280 15.129 Atomic orbital electron populations 1.22210 0.95898 1.01777 1.01999 1.21046 0.93083 0.97593 0.83748 0.89594 1.45873 1.64710 1.14861 1.08646 1.17657 0.78658 0.86173 0.82670 1.90847 1.50057 1.14352 1.84411 1.21240 0.99092 0.90347 0.93582 1.67773 1.08697 1.06795 1.31545 1.22974 0.94354 1.00736 0.87721 1.22369 0.99510 0.94561 0.99875 1.21569 0.96471 0.94589 0.97886 1.22014 1.01295 0.88875 0.95054 1.98423 1.91285 1.10937 1.98238 1.22154 1.01397 0.98692 0.91881 0.91359 1.21437 0.98772 0.99009 0.94719 1.21991 0.99096 0.99833 0.96292 1.20923 0.91040 0.96308 0.90056 1.44024 1.49978 1.37952 0.99460 1.19122 1.10406 1.01675 1.07195 0.91853 1.25023 0.97074 0.97225 1.00078 1.70031 1.36682 1.28797 1.18659 0.86422 0.79199 0.84163 0.77298 1.20978 1.21746 1.21010 1.20781 0.86238 0.97188 0.90389 0.92747 0.91429 0.92671 0.75241 0.81377 0.83456 0.83296 0.93099 0.92598 0.93184 0.92469 0.96637 0.93022 0.93715 0.96638 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.14 37.16 0.34 -1.94 16 2 C 0.15 2.53 2.16 -67.92 -0.15 2.39 16 3 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 4 N -0.69 -11.98 4.46 -54.67 -0.24 -12.23 16 5 C 0.57 10.07 7.77 -12.22 -0.09 9.98 16 6 O -0.52 -10.04 13.61 5.33 0.07 -9.97 16 7 C 0.10 1.54 6.75 -82.98 -0.56 0.98 16 8 N -0.44 -6.48 9.54 -9.78 -0.09 -6.58 16 9 C 0.10 1.13 11.18 -17.56 -0.20 0.93 16 10 C -0.14 -1.26 10.11 -39.33 -0.40 -1.66 16 11 C -0.08 -0.80 9.98 -39.27 -0.39 -1.19 16 12 C -0.04 -0.58 6.37 -38.93 -0.25 -0.83 16 13 Cl -0.02 -0.26 26.04 -51.86 -1.35 -1.61 16 14 C -0.12 -2.22 1.97 -90.50 -0.18 -2.40 16 15 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.10 -1.68 4.86 -26.69 -0.13 -1.81 16 17 C -0.13 -2.30 6.08 -26.62 -0.16 -2.46 16 18 C 0.14 3.03 6.52 -3.71 -0.02 3.01 16 19 N -0.59 -14.82 2.99 -172.32 -0.52 -15.33 16 20 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 21 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 22 C 0.00 0.14 4.92 -17.43 -0.09 0.05 16 23 N -0.90 -25.99 11.20 55.49 0.62 -25.37 16 24 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 C 0.18 4.24 4.34 -3.71 -0.02 4.22 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.87 6.41 -51.93 -0.33 0.53 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 7.17 7.74 -40.82 -0.32 6.86 16 33 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.05 0.72 6.36 -51.93 -0.33 0.39 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.35 5.56 -51.93 -0.29 2.07 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -31.77 367.56 -9.71 -41.48 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.27 Total: 5.36 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.44 Total: 2.17 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.23 Total: -59.51 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.35 Total: -1.61 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.77 -9.71 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025603331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.479 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds