Wall clock time and date at job start Tue Mar 31 2020 21:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47766 * 2 1 4 4 N 1.46506 * 109.47256 * 120.00637 * 2 1 3 5 5 C 1.34775 * 119.99693 * 274.99719 * 4 2 1 6 6 O 1.21535 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.48077 * 120.00085 * 179.97438 * 5 4 2 8 8 N 1.32777 * 119.73769 * 0.02562 * 7 5 4 9 9 C 1.31465 * 121.65579 * 179.97438 * 8 7 5 10 10 C 1.38636 * 120.94481 * 0.02562 * 9 8 7 11 11 C 1.38518 * 119.37028 * 0.02562 * 10 9 8 12 12 C 1.38804 * 118.47969 * 359.72666 * 11 10 9 13 13 Cl 1.73601 * 120.48796 * 180.26347 * 12 11 10 14 14 C 1.53007 * 109.47128 * 240.00334 * 2 1 3 15 15 H 1.08999 * 109.49510 * 300.06423 * 14 2 1 16 16 C 1.53041 * 109.49837 * 60.15983 * 14 2 1 17 17 C 1.53035 * 109.53845 * 181.31657 * 16 14 2 18 18 C 1.53188 * 109.31277 * 298.63967 * 17 16 14 19 19 N 1.46922 * 108.78022 * 54.63629 * 18 17 16 20 20 C 1.36933 * 120.63517 * 126.36795 * 19 18 17 21 21 H 1.08006 * 119.99868 * 331.84898 * 20 19 18 22 22 C 1.38814 * 120.00113 * 151.84101 * 20 19 18 23 23 N 1.31614 * 120.00059 * 343.08675 * 22 20 19 24 24 Si 1.86796 * 119.99690 * 163.07981 * 22 20 19 25 25 H 1.48499 * 109.47591 * 60.00328 * 24 22 20 26 26 H 1.48502 * 109.46965 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47317 * 300.00190 * 24 22 20 28 28 C 1.46930 * 118.73410 * 306.39228 * 19 18 17 29 29 H 1.08996 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46882 * 59.99392 * 1 2 3 31 31 H 1.09001 * 109.46788 * 300.00022 * 1 2 3 32 32 H 0.96998 * 120.00207 * 94.99683 * 4 2 1 33 33 H 1.08006 * 119.52769 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.31834 * 180.02562 * 10 9 8 35 35 H 1.08009 * 120.75966 * 180.02562 * 11 10 9 36 36 H 1.09000 * 109.46169 * 301.34037 * 16 14 2 37 37 H 1.09004 * 109.45477 * 61.29701 * 16 14 2 38 38 H 1.08998 * 109.49805 * 178.68761 * 17 16 14 39 39 H 1.09002 * 109.52407 * 58.60492 * 17 16 14 40 40 H 1.09007 * 109.58633 * 294.84383 * 18 17 16 41 41 H 1.09004 * 109.70489 * 174.49388 * 18 17 16 42 42 H 0.97003 * 119.99878 * 180.02562 * 23 22 20 43 43 H 1.09006 * 109.58542 * 293.81599 * 28 19 18 44 44 H 1.09003 * 109.58352 * 173.40005 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 2.1472 -0.0185 2.3571 6 8 1.8577 1.1606 2.4118 7 6 2.6402 -0.7167 3.5663 8 7 2.9545 -2.0051 3.5007 9 6 3.3961 -2.6618 4.5504 10 6 3.5507 -2.0289 5.7742 11 6 3.2339 -0.6853 5.8889 12 6 2.7748 -0.0151 4.7635 13 17 2.3691 1.6708 4.8467 14 6 2.0400 -0.7212 -1.2493 15 1 1.6760 -1.7486 -1.2504 16 6 1.5335 0.0021 -2.4993 17 6 2.0159 -0.7373 -3.7493 18 6 3.5475 -0.7379 -3.7782 19 7 4.0442 -1.3005 -2.5151 20 6 4.9300 -2.3447 -2.5169 21 1 4.9347 -3.0474 -3.3371 22 6 5.8220 -2.5001 -1.4647 23 7 6.0562 -1.4958 -0.6469 24 14 6.6896 -4.1345 -1.2095 25 1 7.4951 -4.4608 -2.4136 26 1 7.5824 -4.0415 -0.0265 27 1 5.6807 -5.2008 -0.9850 28 6 3.5719 -0.7216 -1.2499 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6319 1.1525 33 1 3.6412 -3.7097 4.4584 34 1 3.9147 -2.5781 6.6299 35 1 3.3462 -0.1698 6.8314 36 1 0.4438 0.0254 -2.4889 37 1 1.9182 1.0220 -2.5095 38 1 1.6354 -0.2350 -4.6387 39 1 1.6520 -1.7646 -3.7280 40 1 3.9112 0.2834 -3.8914 41 1 3.8991 -1.3455 -4.6121 42 1 6.6798 -1.6043 0.0882 43 1 3.9377 0.3010 -1.1569 44 1 3.9376 -1.3199 -0.4154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025603331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:51 Heat of formation + Delta-G solvation = -3.838881 kcal Electronic energy + Delta-G solvation = -27650.793993 eV Core-core repulsion = 23821.738384 eV Total energy + Delta-G solvation = -3829.055609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.73123 -40.42619 -39.23010 -37.62327 -36.59261 -34.83403 -33.83828 -32.79118 -32.13946 -31.44332 -30.06784 -27.13455 -26.14197 -24.80393 -24.35566 -23.69036 -22.26151 -21.45653 -20.73402 -19.15295 -18.66235 -18.06972 -17.38434 -16.89691 -16.78249 -16.37184 -16.16761 -15.78733 -15.40212 -15.05259 -14.99010 -14.76333 -14.63383 -14.35439 -14.09367 -14.02080 -13.68808 -13.40179 -13.32774 -13.07535 -12.92908 -12.77538 -12.59974 -12.39377 -12.34933 -12.13313 -11.98180 -11.70208 -11.49467 -11.25510 -11.15835 -11.04604 -10.92512 -10.52583 -10.38806 -10.19190 -9.89761 -8.65007 -7.84021 -5.30868 -0.55020 -0.00376 0.99244 1.46552 1.48640 1.55661 1.69614 2.08454 2.52429 2.70360 3.09415 3.28364 3.57040 3.61739 3.70602 3.86015 3.97460 4.08638 4.14209 4.19936 4.30241 4.36243 4.46044 4.50626 4.67446 4.77408 4.78203 4.86752 4.89614 4.89785 5.01314 5.06696 5.15871 5.20220 5.28893 5.39550 5.39856 5.47696 5.55397 5.59513 5.69323 5.80847 6.40255 6.40794 6.68931 7.15202 7.16644 7.88783 8.41279 9.20388 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.004473 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.438680 B = 6258.530192 C = 8207.212299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.153 3.847 3 H 0.062 0.938 4 N -0.694 5.694 5 C 0.556 3.444 6 O -0.547 6.547 7 C 0.061 3.939 8 N -0.468 5.468 9 C 0.091 3.909 10 C -0.115 4.115 11 C -0.075 4.075 12 C -0.055 4.055 13 Cl -0.033 7.033 14 C -0.104 4.104 15 H 0.069 0.931 16 C -0.099 4.099 17 C -0.121 4.121 18 C 0.135 3.865 19 N -0.611 5.611 20 C -0.266 4.266 21 H 0.066 0.934 22 C -0.046 4.046 23 N -0.930 5.930 24 Si 0.964 3.036 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.274 1.274 28 C 0.193 3.807 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.409 0.591 33 H 0.197 0.803 34 H 0.198 0.802 35 H 0.183 0.817 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.006 0.994 41 H 0.052 0.948 42 H 0.246 0.754 43 H -0.025 1.025 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 -1.473 12.809 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.048 3.952 3 H 0.080 0.920 4 N -0.343 5.343 5 C 0.341 3.659 6 O -0.424 6.424 7 C -0.077 4.077 8 N -0.179 5.179 9 C -0.069 4.069 10 C -0.134 4.134 11 C -0.101 4.101 12 C -0.085 4.085 13 Cl -0.004 7.004 14 C -0.125 4.125 15 H 0.088 0.912 16 C -0.137 4.137 17 C -0.160 4.160 18 C 0.010 3.990 19 N -0.334 5.334 20 C -0.396 4.396 21 H 0.083 0.917 22 C -0.242 4.242 23 N -0.575 5.575 24 Si 0.792 3.208 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.199 1.199 28 C 0.067 3.933 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.245 0.755 33 H 0.214 0.786 34 H 0.215 0.785 35 H 0.200 0.800 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.055 0.945 43 H -0.007 1.007 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.813 -0.867 12.095 16.247 hybrid contribution 1.293 -0.310 0.821 1.563 sum -9.521 -1.177 12.916 16.089 Atomic orbital electron populations 1.22104 0.93062 1.02749 1.02684 1.20993 0.95113 0.95935 0.83112 0.91992 1.45924 1.64849 1.14684 1.08870 1.18127 0.78159 0.86124 0.83452 1.90806 1.51313 1.15300 1.85029 1.20966 1.02003 0.91301 0.93427 1.67690 1.09956 1.06588 1.33709 1.23637 0.93467 1.01978 0.87840 1.22898 0.96353 0.93866 1.00327 1.22038 0.95020 0.95220 0.97829 1.22242 1.02167 0.88347 0.95767 1.98408 1.91540 1.12193 1.98242 1.21914 0.97286 0.99356 0.93920 0.91244 1.21466 1.00965 0.98132 0.93123 1.21873 0.95526 1.00570 0.98032 1.21129 0.94089 0.95377 0.88453 1.44332 1.50127 1.37892 1.01072 1.19465 1.10589 1.02356 1.07220 0.91660 1.25775 0.98127 1.00280 1.00000 1.70220 1.37491 1.30720 1.19092 0.85394 0.78104 0.80349 0.76927 1.20372 1.22192 1.19942 1.20498 0.89689 0.93923 0.89175 0.91534 0.89393 0.93285 0.75509 0.78612 0.78501 0.79958 0.89305 0.93186 0.89744 0.92248 0.97635 0.92964 0.94492 1.00700 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.14 71.98 0.66 -3.37 16 2 C 0.15 5.31 2.16 44.99 0.10 5.40 16 3 H 0.06 2.44 7.58 -2.39 -0.02 2.43 16 4 N -0.69 -25.33 4.46 -445.15 -1.99 -27.32 16 5 C 0.56 20.98 7.77 86.86 0.67 21.66 16 6 O -0.55 -22.32 13.61 -3.83 -0.05 -22.38 16 7 C 0.06 1.99 6.75 41.90 0.28 2.27 16 8 N -0.47 -13.98 9.54 -184.85 -1.76 -15.74 16 9 C 0.09 1.83 11.18 84.84 0.95 2.78 16 10 C -0.11 -1.60 10.11 22.43 0.23 -1.38 16 11 C -0.08 -1.34 9.98 22.47 0.22 -1.11 16 12 C -0.05 -1.51 6.37 22.69 0.14 -1.36 16 13 Cl -0.03 -0.96 26.04 -2.72 -0.07 -1.03 16 14 C -0.10 -3.87 1.97 -10.72 -0.02 -3.89 16 15 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 16 C -0.10 -3.12 4.86 30.62 0.15 -2.97 16 17 C -0.12 -3.93 6.08 30.67 0.19 -3.74 16 18 C 0.13 5.71 6.52 86.36 0.56 6.28 16 19 N -0.61 -31.37 2.99 -699.08 -2.09 -33.46 16 20 C -0.27 -14.84 9.58 84.03 0.81 -14.03 16 21 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 22 C -0.05 -2.60 4.92 84.86 0.42 -2.18 16 23 N -0.93 -56.05 11.20 21.65 0.24 -55.81 16 24 Si 0.96 44.94 29.59 68.60 2.03 46.97 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 28 C 0.19 9.53 4.34 86.36 0.37 9.90 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 2.02 6.41 -2.38 -0.02 2.00 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.41 15.08 7.74 -92.71 -0.72 14.37 16 33 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.09 2.19 6.36 -2.39 -0.02 2.18 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 41 H 0.05 2.16 7.93 -2.38 -0.02 2.14 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H -0.03 -1.41 8.14 -2.38 -0.02 -1.43 16 44 H 0.06 3.36 5.56 -2.39 -0.01 3.34 16 Total: -1.00 -74.19 367.56 2.34 -71.85 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.30 Total: 22.67 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 5.73 Total: 14.26 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -5.60 Total: -132.34 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.07 Total: -1.03 kcal Total: -74.19 2.34 -71.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025603331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.015 kcal (2) G-P(sol) polarization free energy of solvation -74.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds