Wall clock time and date at job start Tue Mar 31 2020 21:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47240 * 2 1 4 4 N 1.46494 * 109.47434 * 239.99610 * 2 1 3 5 5 C 1.34773 * 119.99934 * 84.99774 * 4 2 1 6 6 O 1.21526 * 120.00185 * 0.02562 * 5 4 2 7 7 C 1.48083 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.32773 * 119.74232 * 359.72770 * 7 5 4 9 9 C 1.31463 * 121.66300 * 179.74691 * 8 7 5 10 10 C 1.38646 * 120.93603 * 0.53348 * 9 8 7 11 11 C 1.38516 * 119.37294 * 359.73462 * 10 9 8 12 12 C 1.38803 * 118.47751 * 0.02562 * 11 10 9 13 13 Cl 1.73604 * 120.48506 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46953 * 119.99553 * 2 1 3 15 15 H 1.08999 * 109.50035 * 59.93556 * 14 2 1 16 16 C 1.53038 * 109.49747 * 299.83800 * 14 2 1 17 17 C 1.53041 * 109.53811 * 178.68417 * 16 14 2 18 18 C 1.53194 * 109.31199 * 61.36722 * 17 16 14 19 19 N 1.46921 * 108.77399 * 305.36395 * 18 17 16 20 20 C 1.36939 * 120.62961 * 233.58783 * 19 18 17 21 21 H 1.08002 * 120.00150 * 151.85059 * 20 19 18 22 22 C 1.38807 * 120.00195 * 331.84550 * 20 19 18 23 23 N 1.31619 * 120.00050 * 343.07311 * 22 20 19 24 24 Si 1.86807 * 120.00093 * 163.06914 * 22 20 19 25 25 H 1.48502 * 109.46836 * 90.00359 * 24 22 20 26 26 H 1.48500 * 109.46987 * 210.00029 * 24 22 20 27 27 H 1.48497 * 109.47013 * 330.00132 * 24 22 20 28 28 C 1.46922 * 118.73925 * 53.61176 * 19 18 17 29 29 H 1.08997 * 109.47063 * 60.00146 * 1 2 3 30 30 H 1.09004 * 109.46825 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47218 * 300.00654 * 1 2 3 32 32 H 0.96995 * 119.99975 * 265.00232 * 4 2 1 33 33 H 1.08000 * 119.53412 * 180.27116 * 9 8 7 34 34 H 1.08003 * 120.30899 * 179.76230 * 10 9 8 35 35 H 1.07999 * 120.75526 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.46568 * 298.70325 * 16 14 2 37 37 H 1.09004 * 109.46140 * 58.66717 * 16 14 2 38 38 H 1.08997 * 109.49750 * 301.41514 * 17 16 14 39 39 H 1.09004 * 109.52534 * 181.33699 * 17 16 14 40 40 H 1.08999 * 109.58463 * 185.58162 * 18 17 16 41 41 H 1.08998 * 109.58901 * 65.15377 * 18 17 16 42 42 H 0.97000 * 120.00197 * 179.97438 * 23 22 20 43 43 H 1.09006 * 109.59099 * 186.60223 * 28 19 18 44 44 H 1.09004 * 109.58639 * 66.17582 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1471 -0.0184 -2.3570 6 8 1.8585 1.1608 -2.4116 7 6 2.6413 -0.7164 -3.5659 8 7 2.9613 -2.0032 -3.4989 9 6 3.3990 -2.6611 -4.5496 10 6 3.5542 -2.0279 -5.7732 11 6 3.2374 -0.6844 -5.8880 12 6 2.7728 -0.0156 -4.7639 13 17 2.3610 1.6688 -4.8487 14 6 2.0400 -0.7212 1.2493 15 1 1.6759 -1.7486 1.2504 16 6 1.5335 0.0023 2.4992 17 6 2.0158 -0.7372 3.7493 18 6 3.5475 -0.7377 3.7783 19 7 4.0441 -1.3002 2.5152 20 6 4.9307 -2.3439 2.5171 21 1 4.9519 -3.0360 1.6882 22 6 5.8022 -2.5123 3.5843 23 7 6.0200 -1.5185 4.4193 24 14 6.6659 -4.1496 3.8355 25 1 7.9578 -4.1451 3.1031 26 1 6.9187 -4.3588 5.2838 27 1 5.8080 -5.2461 3.3192 28 6 3.5719 -0.7215 1.2500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2491 -1.6318 -1.1524 33 1 3.6452 -3.7086 -4.4573 34 1 3.9182 -2.5772 -6.6289 35 1 3.3494 -0.1691 -6.8305 36 1 1.9181 1.0221 2.5096 37 1 0.4437 0.0254 2.4889 38 1 1.6520 -1.7644 3.7274 39 1 1.6352 -0.2354 4.6390 40 1 3.8969 -1.3467 4.6120 41 1 3.9112 0.2836 3.8915 42 1 6.6287 -1.6363 5.1652 43 1 3.9375 -1.3198 0.4154 44 1 3.9376 0.3012 1.1570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025603332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:00 Heat of formation + Delta-G solvation = 15.655914 kcal Electronic energy + Delta-G solvation = -27136.906576 eV Core-core repulsion = 23308.696324 eV Total energy + Delta-G solvation = -3828.210251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.85796 -39.32401 -37.79094 -36.73551 -35.19046 -33.29121 -32.71396 -31.64173 -30.68926 -30.34621 -28.43219 -25.44598 -24.98927 -23.92771 -23.19000 -21.90731 -21.01375 -20.25850 -19.21860 -18.11960 -17.24562 -16.76669 -16.48603 -15.68341 -15.41150 -15.29162 -14.80283 -14.30620 -14.16868 -13.93567 -13.62098 -13.53172 -13.33667 -13.12157 -12.74179 -12.56502 -12.41764 -12.20832 -12.19273 -11.76798 -11.59072 -11.35897 -11.06508 -10.93370 -10.60945 -10.38818 -10.36464 -10.23019 -10.16682 -10.10190 -9.86087 -9.59901 -9.42616 -9.34251 -9.29897 -8.80375 -8.42853 -6.61964 -5.75329 -3.17741 0.24345 0.68054 1.84008 2.64428 3.08644 3.38630 3.45594 3.47829 3.55782 3.91807 4.32651 4.42147 4.47806 4.51016 4.86145 4.98706 5.05861 5.31093 5.41386 5.42384 5.47606 5.51836 5.60493 5.64701 5.81547 5.85372 6.00531 6.08237 6.12715 6.17612 6.35105 6.39855 6.48364 6.62019 6.66664 6.75676 6.86797 6.92267 7.03929 7.28185 7.44281 7.68847 7.71629 7.82576 8.27510 8.48759 9.25101 9.88778 10.45976 11.33051 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.003315 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.664417 B = 8443.171697 C = 9934.411548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.696 5.696 5 C 0.563 3.437 6 O -0.517 6.517 7 C 0.093 3.907 8 N -0.441 5.441 9 C 0.102 3.898 10 C -0.141 4.141 11 C -0.078 4.078 12 C -0.042 4.042 13 Cl -0.016 7.016 14 C -0.110 4.110 15 H 0.072 0.928 16 C -0.101 4.101 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.251 4.251 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.155 3.845 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.410 0.590 33 H 0.171 0.829 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.016 0.984 42 H 0.253 0.747 43 H 0.052 0.948 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 0.393 -19.255 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.106 0.894 4 N -0.347 5.347 5 C 0.347 3.653 6 O -0.392 6.392 7 C -0.047 4.047 8 N -0.152 5.152 9 C -0.058 4.058 10 C -0.161 4.161 11 C -0.104 4.104 12 C -0.072 4.072 13 Cl 0.013 6.987 14 C -0.131 4.131 15 H 0.090 0.910 16 C -0.139 4.139 17 C -0.181 4.181 18 C 0.044 3.956 19 N -0.313 5.313 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.547 5.547 24 Si 0.730 3.270 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.029 3.971 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.247 0.753 33 H 0.188 0.812 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -9.711 0.996 -18.291 20.734 hybrid contribution 0.802 -0.819 -0.718 1.353 sum -8.909 0.177 -19.010 20.995 Atomic orbital electron populations 1.22200 0.95565 1.01937 1.02197 1.21122 0.93558 0.97588 0.83484 0.89411 1.45943 1.65083 1.14822 1.08809 1.17693 0.78786 0.86232 0.82635 1.90867 1.49714 1.14360 1.84268 1.21227 0.99411 0.90403 0.93615 1.67752 1.08904 1.06696 1.31855 1.22990 0.94364 1.00728 0.87712 1.22402 0.99288 0.94524 0.99917 1.21601 0.96239 0.94624 0.97943 1.22037 1.01073 0.89066 0.95052 1.98434 1.91094 1.10904 1.98225 1.21965 0.99578 0.99237 0.92330 0.90963 1.21442 0.98734 0.99023 0.94663 1.22176 1.00875 0.99340 0.95711 1.20786 0.87464 0.97176 0.90213 1.44035 1.49902 1.37905 0.99485 1.19160 1.10998 1.01935 1.05982 0.91797 1.25030 0.97245 0.97416 0.99925 1.70039 1.37774 1.29338 1.17548 0.86333 0.79540 0.84040 0.77084 1.21463 1.21595 1.20485 1.20868 0.89862 0.96354 0.90067 0.92616 0.92644 0.91205 0.75341 0.81217 0.83327 0.83186 0.92586 0.93117 0.92782 0.93270 0.89638 0.96542 0.93698 0.92984 0.96615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.14 37.16 0.34 -1.74 16 2 C 0.15 2.20 2.16 -67.93 -0.15 2.05 16 3 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 4 N -0.70 -10.20 4.46 -54.68 -0.24 -10.45 16 5 C 0.56 8.63 7.77 -12.22 -0.09 8.53 16 6 O -0.52 -8.88 13.61 5.34 0.07 -8.81 16 7 C 0.09 1.24 6.75 -82.98 -0.56 0.68 16 8 N -0.44 -5.31 9.54 -9.78 -0.09 -5.40 16 9 C 0.10 0.87 11.18 -17.56 -0.20 0.67 16 10 C -0.14 -0.94 10.11 -39.33 -0.40 -1.34 16 11 C -0.08 -0.63 9.98 -39.27 -0.39 -1.02 16 12 C -0.04 -0.49 6.37 -38.93 -0.25 -0.74 16 13 Cl -0.02 -0.20 26.04 -51.86 -1.35 -1.55 16 14 C -0.11 -1.86 1.97 -90.50 -0.18 -2.04 16 15 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.10 -1.67 4.85 -26.69 -0.13 -1.80 16 17 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 18 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 19 N -0.59 -14.85 2.99 -172.32 -0.52 -15.36 16 20 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 21 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 22 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 23 N -0.90 -26.39 11.20 55.49 0.62 -25.77 16 24 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.16 3.28 5.55 -3.71 -0.02 3.26 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.84 6.41 -51.93 -0.33 0.51 16 32 H 0.41 5.81 7.74 -40.82 -0.32 5.50 16 33 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.15 0.47 8.06 -52.48 -0.42 0.04 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.72 6.37 -51.93 -0.33 0.39 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.05 1.09 7.44 -51.93 -0.39 0.71 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -32.03 367.56 -9.71 -41.74 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.27 Total: 2.78 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.44 Total: 0.63 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.23 Total: -56.98 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.35 Total: -1.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.03 -9.71 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025603332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.394 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds