Wall clock time and date at job start Tue Mar 31 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46776 * 2 1 4 4 C 1.35630 * 125.67035 * 264.15339 * 3 2 1 5 5 C 1.35522 * 108.84810 * 180.02562 * 4 3 2 6 6 Cl 1.73598 * 126.07386 * 180.26172 * 5 4 3 7 7 C 1.39884 * 107.85134 * 0.02562 * 5 4 3 8 8 C 1.37630 * 125.67942 * 84.18527 * 3 2 1 9 9 C 1.46670 * 126.22087 * 0.02562 * 8 3 2 10 10 O 1.21690 * 120.00190 * 343.30819 * 9 8 3 11 11 N 1.34786 * 120.00004 * 163.31341 * 9 8 3 12 12 C 1.47158 * 120.70859 * 173.42498 * 11 9 8 13 13 C 1.53888 * 108.02761 * 132.76104 * 12 11 9 14 14 H 1.08993 * 112.09488 * 181.91316 * 13 12 11 15 15 C 1.54548 * 107.82631 * 305.86688 * 13 12 11 16 16 C 1.55862 * 104.09591 * 89.28433 * 15 13 12 17 17 C 1.54547 * 104.99540 * 359.97438 * 16 15 13 18 18 H 1.08997 * 112.17644 * 146.42284 * 17 16 15 19 19 C 1.47162 * 120.70715 * 353.14884 * 11 9 8 20 20 N 1.48303 * 107.21044 * 58.35711 * 13 12 11 21 21 C 1.36943 * 128.07375 * 106.70454 * 20 13 12 22 22 H 1.07995 * 120.00273 * 12.55716 * 21 20 13 23 23 C 1.38810 * 119.99787 * 192.55323 * 21 20 13 24 24 N 1.31625 * 120.00508 * 14.35475 * 23 21 20 25 25 Si 1.86803 * 119.99914 * 194.35041 * 23 21 20 26 26 H 1.48491 * 109.47074 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46995 * 120.00425 * 25 23 21 28 28 H 1.48505 * 109.47056 * 239.99879 * 25 23 21 29 29 H 1.08999 * 109.46861 * 63.69730 * 1 2 3 30 30 H 1.08998 * 109.47005 * 183.68919 * 1 2 3 31 31 H 1.08999 * 109.47203 * 303.69657 * 1 2 3 32 32 H 1.08996 * 109.46870 * 239.99866 * 2 1 3 33 33 H 1.09001 * 109.46412 * 119.99931 * 2 1 3 34 34 H 1.07994 * 125.58045 * 0.02887 * 4 3 2 35 35 H 1.08006 * 126.45264 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.74572 * 252.38968 * 12 11 9 37 37 H 1.08989 * 109.75313 * 13.07416 * 12 11 9 38 38 H 1.09005 * 110.36178 * 207.91594 * 15 13 12 39 39 H 1.08998 * 110.36536 * 330.23211 * 15 13 12 40 40 H 1.09001 * 110.27693 * 241.09655 * 16 15 13 41 41 H 1.08994 * 110.29981 * 118.87882 * 16 15 13 42 42 H 1.09001 * 109.74871 * 346.87301 * 19 11 9 43 43 H 1.09001 * 109.75425 * 107.60550 * 19 11 9 44 44 H 0.96991 * 120.00674 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3877 2.0895 -1.0961 5 6 2.7829 3.3257 -0.7059 6 17 3.3392 4.5976 -1.7483 7 6 2.6579 3.3965 0.6856 8 6 2.1791 2.1758 1.1122 9 6 1.8945 1.7931 2.4992 10 8 1.2030 0.8193 2.7321 11 7 2.3990 2.5201 3.5159 12 6 2.0088 2.2390 4.9067 13 6 3.2885 2.1921 5.7602 14 1 3.0776 1.9538 6.8026 15 6 4.2523 1.1726 5.1121 16 6 5.0776 2.0216 4.0984 17 6 4.5274 3.4589 4.2395 18 1 5.3004 4.2121 4.0870 19 6 3.3563 3.6080 3.2594 20 7 3.9639 3.5040 5.6107 21 6 4.0476 4.5198 6.5253 22 1 3.7682 4.3449 7.5537 23 6 4.4918 5.7742 6.1304 24 7 4.5627 6.0748 4.8509 25 14 4.9889 7.0360 7.4151 26 1 4.8190 6.4552 8.7711 27 1 6.4109 7.4139 7.2135 28 1 4.1326 8.2420 7.2817 29 1 -0.3633 0.4554 -0.9213 30 1 -0.3633 -1.0255 0.0661 31 1 -0.3633 0.5701 0.8550 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3699 1.7277 -2.1135 35 1 2.8921 4.2473 1.3084 36 1 1.3515 3.0283 5.2715 37 1 1.4954 1.2790 4.9584 38 1 4.9063 0.7359 5.8670 39 1 3.6902 0.3924 4.5989 40 1 4.9228 1.6542 3.0839 41 1 6.1364 1.9936 4.3555 42 1 3.7236 3.5414 2.2353 43 1 2.8700 4.5710 3.4151 44 1 4.8735 6.9512 4.5750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029587177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:41 Heat of formation + Delta-G solvation = 51.119624 kcal Electronic energy + Delta-G solvation = -28559.327646 eV Core-core repulsion = 24732.655217 eV Total energy + Delta-G solvation = -3826.672429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.71312 -41.14698 -39.08146 -37.34028 -35.79876 -34.81277 -34.12203 -32.51276 -31.04730 -30.35537 -30.17460 -27.85442 -25.74616 -25.52135 -24.46653 -23.14807 -21.94246 -21.27260 -20.71241 -20.16642 -18.93204 -17.70609 -17.40375 -17.05669 -16.68694 -16.34079 -16.15487 -15.58983 -15.41704 -15.16814 -14.93597 -14.71014 -14.51107 -14.38954 -14.01099 -13.90710 -13.61411 -13.56179 -13.28732 -13.04731 -12.95969 -12.83869 -12.55933 -12.53335 -12.33424 -12.10622 -11.95861 -11.77553 -11.75947 -11.49321 -11.39566 -11.14441 -10.99301 -10.61961 -9.76959 -9.63839 -9.21701 -8.69313 -7.84386 -5.15325 0.38658 1.16533 1.46055 1.49703 1.52714 1.60661 1.72024 2.23802 2.37256 2.53798 3.35082 3.48383 3.54854 3.80828 3.99337 4.06354 4.12066 4.14144 4.20866 4.23139 4.35290 4.40012 4.45159 4.51026 4.58887 4.71273 4.77277 4.80402 4.85786 4.94536 4.98601 5.04341 5.07465 5.12394 5.24925 5.28959 5.34837 5.44346 5.55816 5.61922 5.74420 5.83702 6.13150 6.23149 6.50999 7.09237 7.13389 7.74632 8.53416 9.28155 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012872 B = 0.004334 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.769890 B = 6459.344559 C = 8011.913793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.100 3.900 3 N -0.400 5.400 4 C 0.053 3.947 5 C -0.140 4.140 6 Cl -0.049 7.049 7 C -0.148 4.148 8 C -0.049 4.049 9 C 0.580 3.420 10 O -0.578 6.578 11 N -0.579 5.579 12 C 0.110 3.890 13 C 0.130 3.870 14 H 0.086 0.914 15 C -0.111 4.111 16 C -0.126 4.126 17 C 0.163 3.837 18 H 0.086 0.914 19 C 0.099 3.901 20 N -0.603 5.603 21 C -0.235 4.235 22 H 0.076 0.924 23 C -0.049 4.049 24 N -0.931 5.931 25 Si 0.965 3.035 26 H -0.272 1.272 27 H -0.294 1.294 28 H -0.298 1.298 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.217 0.783 35 H 0.155 0.845 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.048 0.952 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -11.912 -13.413 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.020 4.020 3 N -0.073 5.073 4 C -0.084 4.084 5 C -0.173 4.173 6 Cl -0.021 7.021 7 C -0.174 4.174 8 C -0.163 4.163 9 C 0.370 3.630 10 O -0.462 6.462 11 N -0.309 5.309 12 C -0.014 4.014 13 C 0.022 3.978 14 H 0.104 0.896 15 C -0.150 4.150 16 C -0.165 4.165 17 C 0.056 3.944 18 H 0.104 0.896 19 C -0.025 4.025 20 N -0.325 5.325 21 C -0.363 4.363 22 H 0.094 0.906 23 C -0.244 4.244 24 N -0.578 5.578 25 Si 0.795 3.205 26 H -0.197 1.197 27 H -0.221 1.221 28 H -0.225 1.225 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.149 0.851 33 H 0.102 0.898 34 H 0.234 0.766 35 H 0.172 0.828 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.067 0.933 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.107 -12.430 -13.237 18.617 hybrid contribution 0.245 1.580 0.818 1.796 sum -3.862 -10.850 -12.419 16.937 Atomic orbital electron populations 1.22035 0.93537 1.03876 1.02039 1.22220 0.96396 0.77621 1.05720 1.44224 1.46181 1.12533 1.04333 1.22242 1.02396 0.90480 0.93304 1.20035 1.13841 0.92376 0.91037 1.98315 1.88528 1.49878 1.65345 1.21870 1.03612 0.97590 0.94351 1.19826 1.15039 0.93161 0.88285 1.17120 0.79716 0.82350 0.83806 1.90709 1.41708 1.28242 1.85493 1.47817 1.43261 1.33735 1.06046 1.22272 0.97994 1.00535 0.80613 1.22122 0.91154 0.87030 0.97459 0.89587 1.22644 0.97668 0.96659 0.98064 1.22787 0.98984 0.96343 0.98361 1.21721 0.93917 0.94494 0.84278 0.89604 1.22950 0.90659 0.87874 1.00973 1.45370 1.60290 1.13453 1.13352 1.19285 1.38470 0.88763 0.89805 0.90582 1.25375 1.03154 0.98201 0.97636 1.70013 1.52207 1.21200 1.14410 0.85218 0.77053 0.78983 0.79210 1.19676 1.22103 1.22507 0.91220 0.88908 0.94346 0.85086 0.89841 0.76628 0.82782 0.93672 0.89346 0.91341 0.91648 0.92194 0.92452 0.87731 0.93335 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.09 71.98 0.73 -2.12 16 2 C 0.10 1.82 6.06 86.38 0.52 2.34 16 3 N -0.40 -9.54 2.76 -510.87 -1.41 -10.95 16 4 C 0.05 1.09 11.35 83.48 0.95 2.03 16 5 C -0.14 -3.65 6.66 22.04 0.15 -3.51 16 6 Cl -0.05 -1.20 29.30 -2.72 -0.08 -1.28 16 7 C -0.15 -4.64 8.59 22.59 0.19 -4.45 16 8 C -0.05 -1.55 6.61 40.35 0.27 -1.29 16 9 C 0.58 20.86 7.59 86.44 0.66 21.52 16 10 O -0.58 -21.72 13.56 -4.32 -0.06 -21.78 16 11 N -0.58 -22.04 2.27 -820.57 -1.86 -23.90 16 12 C 0.11 4.22 5.92 86.55 0.51 4.73 16 13 C 0.13 5.06 4.27 45.47 0.19 5.26 16 14 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 15 C -0.11 -3.82 6.31 32.11 0.20 -3.62 16 16 C -0.13 -4.62 6.22 32.11 0.20 -4.42 16 17 C 0.16 7.20 3.13 45.32 0.14 7.34 16 18 H 0.09 4.38 6.38 -2.39 -0.02 4.36 16 19 C 0.10 4.04 4.27 86.40 0.37 4.41 16 20 N -0.60 -28.45 2.82 -637.52 -1.79 -30.24 16 21 C -0.23 -12.28 10.35 84.03 0.87 -11.41 16 22 H 0.08 3.90 7.87 -2.91 -0.02 3.88 16 23 C -0.05 -2.60 5.37 84.86 0.46 -2.14 16 24 N -0.93 -51.23 10.57 21.65 0.23 -51.00 16 25 Si 0.97 43.91 29.58 68.60 2.03 45.94 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 28 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 0.99 7.13 -2.39 -0.02 0.97 16 32 H 0.13 1.28 8.12 -2.39 -0.02 1.26 16 33 H 0.08 1.85 7.12 -2.39 -0.02 1.84 16 34 H 0.22 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.15 5.36 5.35 -2.91 -0.02 5.35 16 36 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 3.16 7.08 -2.39 -0.02 3.14 16 38 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.06 2.14 7.84 -2.39 -0.02 2.12 16 40 H 0.06 2.07 7.83 -2.39 -0.02 2.05 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.11 3.94 3.97 -2.39 -0.01 3.93 16 43 H 0.05 2.34 7.82 -2.39 -0.02 2.32 16 44 H 0.25 13.47 8.31 -92.72 -0.77 12.70 16 Total: -1.00 -62.11 356.69 4.48 -57.63 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 1.02 Total: 20.91 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 6.41 Total: 14.68 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -4.84 Total: -116.10 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -62.11 4.48 -57.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029587177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.751 kcal (2) G-P(sol) polarization free energy of solvation -62.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds