Wall clock time and date at job start Tue Mar 31 2020 22:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46573 * 2 1 4 4 C 1.34780 * 119.99895 * 84.85708 * 3 2 1 5 5 O 1.21548 * 120.00016 * 185.30941 * 4 3 2 6 6 C 1.47838 * 119.99997 * 5.30613 * 4 3 2 7 7 C 1.39561 * 120.55517 * 54.73170 * 6 4 3 8 8 N 1.31664 * 120.59849 * 179.97438 * 7 6 4 9 9 C 1.31951 * 121.89053 * 359.97438 * 8 7 6 10 10 C 1.38421 * 121.06347 * 359.97438 * 9 8 7 11 11 Cl 1.73602 * 120.36206 * 180.02562 * 10 9 8 12 12 C 1.38516 * 119.28082 * 0.02562 * 10 9 8 13 13 C 1.50700 * 120.86262 * 179.97438 * 12 10 9 14 14 C 1.46503 * 119.99966 * 264.85201 * 3 2 1 15 15 H 1.08993 * 110.63759 * 1.68539 * 14 3 2 16 16 C 1.55149 * 110.71840 * 125.02807 * 14 3 2 17 17 C 1.54910 * 101.58172 * 153.86277 * 16 14 3 18 18 N 1.47424 * 104.83240 * 322.99075 * 17 16 14 19 19 C 1.36936 * 125.64957 * 204.16147 * 18 17 16 20 20 H 1.07995 * 120.00216 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99638 * 359.95795 * 19 18 17 22 22 N 1.31624 * 120.00252 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47109 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47353 * 120.00019 * 23 21 19 26 26 H 1.48504 * 109.47331 * 240.00150 * 23 21 19 27 27 C 1.47022 * 108.70431 * 24.12665 * 18 17 16 28 28 H 1.09002 * 109.47155 * 299.99365 * 1 2 3 29 29 H 1.08994 * 109.47270 * 60.00357 * 1 2 3 30 30 H 1.09000 * 109.46489 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47336 * 240.00618 * 2 1 3 32 32 H 1.08994 * 109.47270 * 119.99643 * 2 1 3 33 33 H 1.08000 * 119.70360 * 359.97438 * 7 6 4 34 34 H 1.08003 * 119.46637 * 180.02562 * 9 8 7 35 35 H 1.08998 * 109.46719 * 85.12835 * 13 12 10 36 36 H 1.09001 * 109.47048 * 205.12602 * 13 12 10 37 37 H 1.09001 * 109.47139 * 325.12623 * 13 12 10 38 38 H 1.09000 * 111.00697 * 271.93762 * 16 14 3 39 39 H 1.09004 * 111.00860 * 35.79365 * 16 14 3 40 40 H 1.08998 * 110.37101 * 204.14860 * 17 16 14 41 41 H 1.09006 * 110.36219 * 81.82656 * 17 16 14 42 42 H 0.96998 * 119.99952 * 180.02562 * 22 21 19 43 43 H 1.08999 * 109.88133 * 239.52833 * 27 18 17 44 44 H 1.08997 * 109.88082 * 118.35541 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1442 2.0515 1.1625 5 8 2.4563 3.2263 1.1561 6 6 1.9026 1.3579 2.4456 7 6 2.5939 0.1871 2.7603 8 7 2.3798 -0.4311 3.9029 9 6 1.5144 0.0228 4.7895 10 6 0.7896 1.1782 4.5535 11 17 -0.3438 1.7594 5.7331 12 6 0.9784 1.8657 3.3659 13 6 0.2078 3.1270 3.0719 14 6 2.3697 2.0340 -1.2636 15 1 2.1826 1.3674 -2.1054 16 6 1.5906 3.3655 -1.4289 17 6 2.5378 4.1669 -2.3565 18 7 3.8962 3.8062 -1.9114 19 6 5.0214 4.5670 -2.0853 20 1 5.9743 4.2129 -1.7209 21 6 4.9372 5.7932 -2.7305 22 7 3.7759 6.2244 -3.1755 23 14 6.4719 6.8313 -2.9673 24 1 7.6408 6.1279 -2.3805 25 1 6.7025 7.0505 -4.4178 26 1 6.2927 8.1413 -2.2911 27 6 3.8425 2.4947 -1.2490 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.3109 -0.2156 2.0602 34 1 1.3699 -0.5154 5.7147 35 1 0.7220 3.9789 3.5169 36 1 0.1385 3.2673 1.9932 37 1 -0.7944 3.0471 3.4931 38 1 0.6258 3.1969 -1.9073 39 1 1.4668 3.8675 -0.4693 40 1 2.3708 5.2373 -2.2359 41 1 2.3887 3.8736 -3.3957 42 1 3.7171 7.0810 -3.6266 43 1 4.1927 2.5843 -0.2207 44 1 4.4601 1.7796 -1.7923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033866045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:48 Heat of formation + Delta-G solvation = 36.577720 kcal Electronic energy + Delta-G solvation = -27895.519159 eV Core-core repulsion = 24068.216145 eV Total energy + Delta-G solvation = -3827.303013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18523 -39.54909 -37.02632 -36.83172 -35.60870 -34.10720 -32.50479 -31.44613 -30.37594 -29.04281 -28.28571 -27.04654 -25.04016 -24.29309 -23.23381 -22.78721 -20.99339 -20.13384 -19.11925 -17.52420 -17.20630 -16.91286 -16.78072 -15.90727 -15.55100 -14.82868 -14.75119 -14.51334 -14.25455 -13.90474 -13.86214 -13.35363 -13.19543 -13.14869 -13.08530 -12.88364 -12.35575 -12.17293 -12.11681 -11.98440 -11.81767 -11.52866 -11.49565 -11.24114 -10.98341 -10.89656 -10.76826 -10.61224 -10.09471 -10.02969 -9.82243 -9.74718 -9.51793 -9.30796 -9.10852 -8.57729 -8.40427 -6.73410 -5.56954 -2.97535 0.38389 0.68365 1.63375 2.68000 2.95688 3.31580 3.45057 3.50443 3.52954 3.99551 4.21078 4.23163 4.32613 4.57063 4.75873 4.85050 4.91034 5.04507 5.17074 5.23386 5.38542 5.41417 5.43684 5.52021 5.52794 5.60910 5.62654 5.76613 5.78771 5.87161 5.89148 6.00827 6.08798 6.26423 6.53188 6.57055 6.63887 6.75734 7.14381 7.39599 7.46394 7.62206 7.71455 7.94058 8.27118 8.45387 9.30271 9.91339 10.55827 11.47051 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.003176 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.585894 B = 8812.748644 C = 9297.409274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.597 5.597 4 C 0.558 3.442 5 O -0.488 6.488 6 C -0.158 4.158 7 C 0.135 3.865 8 N -0.473 5.473 9 C 0.127 3.873 10 C -0.098 4.098 11 Cl -0.048 7.048 12 C 0.014 3.986 13 C -0.124 4.124 14 C 0.135 3.865 15 H 0.091 0.909 16 C -0.158 4.158 17 C 0.158 3.842 18 N -0.596 5.596 19 C -0.215 4.215 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.134 3.866 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.009 0.991 42 H 0.250 0.750 43 H 0.032 0.968 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 -15.646 13.658 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.330 5.330 4 C 0.343 3.657 5 O -0.361 6.361 6 C -0.164 4.164 7 C -0.023 4.023 8 N -0.181 5.181 9 C -0.030 4.030 10 C -0.127 4.127 11 Cl -0.020 7.020 12 C 0.005 3.995 13 C -0.180 4.180 14 C 0.032 3.968 15 H 0.109 0.891 16 C -0.198 4.198 17 C 0.033 3.967 18 N -0.322 5.322 19 C -0.343 4.343 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.186 0.814 34 H 0.185 0.815 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.027 0.973 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -10.411 -15.519 13.834 23.251 hybrid contribution 0.224 1.121 -0.221 1.164 sum -10.187 -14.398 13.613 22.279 Atomic orbital electron populations 1.22193 0.95812 1.02062 1.02669 1.21769 0.94726 0.82799 1.03380 1.47951 1.64953 1.13769 1.06359 1.17869 0.78558 0.86552 0.82769 1.90928 1.44416 1.14402 1.86344 1.21069 1.00121 0.97894 0.97323 1.23065 0.96044 0.89719 0.93425 1.67863 1.16038 1.31885 1.02343 1.22904 0.90042 0.91526 0.98534 1.21866 0.99029 0.98760 0.93049 1.98378 1.59177 1.88392 1.56019 1.20246 0.93293 0.95619 0.90368 1.20972 0.99308 0.93505 1.04193 1.22284 0.96954 0.94660 0.82869 0.89068 1.23497 0.97760 0.95595 1.02901 1.21847 0.81583 1.01186 0.92101 1.44301 1.05119 1.16238 1.66529 1.19096 0.86393 0.98328 1.30507 0.90629 1.24757 0.97155 0.97851 1.00999 1.69807 1.21977 1.20919 1.44481 0.86011 0.81964 0.80326 0.77293 1.20603 1.21851 1.21802 1.21473 0.92260 0.88906 0.96694 0.92832 0.91769 0.91636 0.89640 0.90591 0.81350 0.81519 0.88899 0.90007 0.90322 0.92965 0.89524 0.87529 0.97272 0.93916 0.95052 0.96356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.20 37.16 0.38 -1.13 16 2 C 0.10 0.95 5.90 -4.04 -0.02 0.92 16 3 N -0.60 -8.37 2.55 -165.13 -0.42 -8.79 16 4 C 0.56 8.71 5.17 -12.33 -0.06 8.65 16 5 O -0.49 -9.89 12.50 5.32 0.07 -9.82 16 6 C -0.16 -2.01 4.87 -104.83 -0.51 -2.53 16 7 C 0.13 1.50 8.79 -17.13 -0.15 1.35 16 8 N -0.47 -5.13 10.34 -12.88 -0.13 -5.26 16 9 C 0.13 1.21 10.97 -17.43 -0.19 1.02 16 10 C -0.10 -1.00 6.33 -39.41 -0.25 -1.24 16 11 Cl -0.05 -0.43 27.57 -51.86 -1.43 -1.86 16 12 C 0.01 0.16 5.95 -103.87 -0.62 -0.46 16 13 C -0.12 -1.43 8.91 36.01 0.32 -1.10 16 14 C 0.13 2.33 3.44 -66.10 -0.23 2.10 16 15 H 0.09 1.39 7.81 -51.93 -0.41 0.98 16 16 C -0.16 -3.14 6.39 -24.59 -0.16 -3.29 16 17 C 0.16 3.96 5.89 -2.53 -0.01 3.94 16 18 N -0.60 -15.84 3.39 -170.07 -0.58 -16.42 16 19 C -0.21 -6.22 10.27 -15.06 -0.15 -6.38 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 22 N -0.92 -27.61 10.09 55.49 0.56 -27.05 16 23 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 27 C 0.13 2.90 6.52 -3.06 -0.02 2.88 16 28 H 0.05 0.52 8.03 -51.93 -0.42 0.11 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.72 7.86 -51.93 -0.41 0.32 16 32 H 0.08 0.66 4.50 -51.93 -0.23 0.43 16 33 H 0.17 1.61 7.32 -52.49 -0.38 1.22 16 34 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.07 6.73 -51.93 -0.35 0.72 16 37 H 0.08 0.75 7.23 -51.93 -0.38 0.37 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.87 5.63 -51.93 -0.29 1.58 16 40 H 0.11 3.05 5.87 -51.93 -0.31 2.74 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.03 0.73 6.44 -51.93 -0.33 0.39 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -33.22 362.91 -9.28 -42.50 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.01 Total: -0.79 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.78 Total: 4.26 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.57 Total: -57.53 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.07 Total: -9.82 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.43 Total: -1.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.22 -9.28 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033866045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.074 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds