Wall clock time and date at job start Tue Mar 31 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46573 * 2 1 4 4 C 1.34780 * 119.99895 * 84.85708 * 3 2 1 5 5 O 1.21548 * 120.00016 * 185.30941 * 4 3 2 6 6 C 1.47838 * 119.99997 * 5.30613 * 4 3 2 7 7 C 1.39561 * 120.55517 * 54.73170 * 6 4 3 8 8 N 1.31664 * 120.59849 * 179.97438 * 7 6 4 9 9 C 1.31951 * 121.89053 * 359.97438 * 8 7 6 10 10 C 1.38421 * 121.06347 * 359.97438 * 9 8 7 11 11 Cl 1.73602 * 120.36206 * 180.02562 * 10 9 8 12 12 C 1.38516 * 119.28082 * 0.02562 * 10 9 8 13 13 C 1.50700 * 120.86262 * 179.97438 * 12 10 9 14 14 C 1.46503 * 119.99966 * 264.85201 * 3 2 1 15 15 H 1.08993 * 110.63759 * 1.68539 * 14 3 2 16 16 C 1.55149 * 110.71840 * 125.02807 * 14 3 2 17 17 C 1.54910 * 101.58172 * 153.86277 * 16 14 3 18 18 N 1.47424 * 104.83240 * 322.99075 * 17 16 14 19 19 C 1.36936 * 125.64957 * 204.16147 * 18 17 16 20 20 H 1.07995 * 120.00216 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99638 * 359.95795 * 19 18 17 22 22 N 1.31624 * 120.00252 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47109 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47353 * 120.00019 * 23 21 19 26 26 H 1.48504 * 109.47331 * 240.00150 * 23 21 19 27 27 C 1.47022 * 108.70431 * 24.12665 * 18 17 16 28 28 H 1.09002 * 109.47155 * 299.99365 * 1 2 3 29 29 H 1.08994 * 109.47270 * 60.00357 * 1 2 3 30 30 H 1.09000 * 109.46489 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47336 * 240.00618 * 2 1 3 32 32 H 1.08994 * 109.47270 * 119.99643 * 2 1 3 33 33 H 1.08000 * 119.70360 * 359.97438 * 7 6 4 34 34 H 1.08003 * 119.46637 * 180.02562 * 9 8 7 35 35 H 1.08998 * 109.46719 * 85.12835 * 13 12 10 36 36 H 1.09001 * 109.47048 * 205.12602 * 13 12 10 37 37 H 1.09001 * 109.47139 * 325.12623 * 13 12 10 38 38 H 1.09000 * 111.00697 * 271.93762 * 16 14 3 39 39 H 1.09004 * 111.00860 * 35.79365 * 16 14 3 40 40 H 1.08998 * 110.37101 * 204.14860 * 17 16 14 41 41 H 1.09006 * 110.36219 * 81.82656 * 17 16 14 42 42 H 0.96998 * 119.99952 * 180.02562 * 22 21 19 43 43 H 1.08999 * 109.88133 * 239.52833 * 27 18 17 44 44 H 1.08997 * 109.88082 * 118.35541 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1442 2.0515 1.1625 5 8 2.4563 3.2263 1.1561 6 6 1.9026 1.3579 2.4456 7 6 2.5939 0.1871 2.7603 8 7 2.3798 -0.4311 3.9029 9 6 1.5144 0.0228 4.7895 10 6 0.7896 1.1782 4.5535 11 17 -0.3438 1.7594 5.7331 12 6 0.9784 1.8657 3.3659 13 6 0.2078 3.1270 3.0719 14 6 2.3697 2.0340 -1.2636 15 1 2.1826 1.3674 -2.1054 16 6 1.5906 3.3655 -1.4289 17 6 2.5378 4.1669 -2.3565 18 7 3.8962 3.8062 -1.9114 19 6 5.0214 4.5670 -2.0853 20 1 5.9743 4.2129 -1.7209 21 6 4.9372 5.7932 -2.7305 22 7 3.7759 6.2244 -3.1755 23 14 6.4719 6.8313 -2.9673 24 1 7.6408 6.1279 -2.3805 25 1 6.7025 7.0505 -4.4178 26 1 6.2927 8.1413 -2.2911 27 6 3.8425 2.4947 -1.2490 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.3109 -0.2156 2.0602 34 1 1.3699 -0.5154 5.7147 35 1 0.7220 3.9789 3.5169 36 1 0.1385 3.2673 1.9932 37 1 -0.7944 3.0471 3.4931 38 1 0.6258 3.1969 -1.9073 39 1 1.4668 3.8675 -0.4693 40 1 2.3708 5.2373 -2.2359 41 1 2.3887 3.8736 -3.3957 42 1 3.7171 7.0810 -3.6266 43 1 4.1927 2.5843 -0.2207 44 1 4.4601 1.7796 -1.7923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033866045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:47 Heat of formation + Delta-G solvation = 16.194103 kcal Electronic energy + Delta-G solvation = -27896.403059 eV Core-core repulsion = 24068.216145 eV Total energy + Delta-G solvation = -3828.186913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.19390 -40.68684 -38.47771 -37.76888 -36.86875 -35.04237 -34.34496 -32.46094 -31.62768 -30.73119 -29.33406 -28.58883 -26.61942 -25.65524 -24.11157 -23.74631 -22.33956 -22.07760 -20.31389 -18.98975 -18.49479 -18.15484 -17.59454 -17.23715 -16.78846 -16.51280 -15.94588 -15.71812 -15.63028 -15.32202 -14.81303 -14.70396 -14.43443 -14.08153 -14.03454 -13.98244 -13.86485 -13.43799 -13.28623 -13.10310 -13.03356 -12.99007 -12.79047 -12.76300 -12.38655 -12.26095 -12.19573 -12.08294 -11.99130 -11.81746 -11.41346 -11.08980 -10.75523 -10.70143 -10.40595 -10.07895 -9.66111 -8.85847 -7.76425 -5.19970 -0.46985 -0.18602 0.84755 1.43727 1.46062 1.55455 1.55953 1.83771 2.42415 2.50075 3.14605 3.31759 3.34659 3.38751 3.46668 3.74768 3.89336 3.91559 3.99572 4.05956 4.15686 4.27551 4.35369 4.37919 4.49163 4.51495 4.55539 4.65875 4.74511 4.81946 4.87758 4.93895 4.98080 5.01067 5.02090 5.12366 5.23624 5.33108 5.44165 5.62499 5.75467 5.81312 6.31539 6.35913 6.57797 7.09719 7.11674 7.79354 8.42795 9.25399 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.003176 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.585894 B = 8812.748644 C = 9297.409274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.590 5.590 4 C 0.559 3.441 5 O -0.545 6.545 6 C -0.172 4.172 7 C 0.141 3.859 8 N -0.478 5.478 9 C 0.137 3.863 10 C -0.098 4.098 11 Cl -0.035 7.035 12 C 0.005 3.995 13 C -0.119 4.119 14 C 0.153 3.847 15 H 0.124 0.876 16 C -0.143 4.143 17 C 0.162 3.838 18 N -0.619 5.619 19 C -0.235 4.235 20 H 0.075 0.925 21 C -0.068 4.068 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.293 1.293 27 C 0.131 3.869 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.184 0.816 34 H 0.199 0.801 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.065 0.935 41 H -0.004 1.004 42 H 0.246 0.754 43 H 0.013 0.987 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.491 -18.466 14.840 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.322 5.322 4 C 0.346 3.654 5 O -0.423 6.423 6 C -0.178 4.178 7 C -0.016 4.016 8 N -0.187 5.187 9 C -0.020 4.020 10 C -0.127 4.127 11 Cl -0.006 7.006 12 C -0.004 4.004 13 C -0.175 4.175 14 C 0.050 3.950 15 H 0.142 0.858 16 C -0.183 4.183 17 C 0.036 3.964 18 N -0.345 5.345 19 C -0.364 4.364 20 H 0.093 0.907 21 C -0.260 4.260 22 N -0.598 5.598 23 Si 0.808 3.192 24 H -0.193 1.193 25 H -0.214 1.214 26 H -0.221 1.221 27 C 0.005 3.995 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.201 0.799 34 H 0.215 0.785 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.014 0.986 42 H 0.056 0.944 43 H 0.031 0.969 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.892 -18.413 15.031 26.146 hybrid contribution 0.326 1.956 -0.490 2.043 sum -10.566 -16.457 14.541 24.370 Atomic orbital electron populations 1.22153 0.94897 1.03421 1.01780 1.22109 0.95409 0.80210 1.05264 1.47957 1.64239 1.15254 1.04745 1.18305 0.77159 0.85920 0.84010 1.90905 1.47065 1.17024 1.87260 1.20818 1.01782 0.98895 0.96302 1.23238 0.95633 0.88924 0.93854 1.67967 1.16475 1.31909 1.02336 1.23420 0.88584 0.90948 0.99013 1.21883 0.99363 0.98772 0.92672 1.98387 1.58638 1.88316 1.55250 1.20309 0.93351 0.95660 0.91045 1.20895 1.00332 0.93439 1.02813 1.22008 0.93261 0.94268 0.85503 0.85799 1.23244 0.98098 0.96188 1.00720 1.21589 0.82585 0.99635 0.92559 1.44591 1.05009 1.18030 1.66841 1.19433 0.87375 0.99152 1.30448 0.90735 1.25618 1.00210 0.99039 1.01165 1.70074 1.23785 1.20954 1.45008 0.84990 0.78831 0.78233 0.77157 1.19313 1.21359 1.22055 1.21617 0.95626 0.87147 0.95091 0.93989 0.92424 0.89100 0.87384 0.89075 0.79946 0.78458 0.89954 0.92080 0.88424 0.90094 0.91548 0.91715 0.98637 0.94413 0.96856 0.95243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.20 71.98 0.73 -1.73 16 2 C 0.09 1.51 5.90 86.38 0.51 2.02 16 3 N -0.59 -15.77 2.55 -794.64 -2.03 -17.79 16 4 C 0.56 17.49 5.17 86.78 0.45 17.94 16 5 O -0.55 -23.08 12.50 -3.87 -0.05 -23.13 16 6 C -0.17 -4.22 4.87 -20.00 -0.10 -4.32 16 7 C 0.14 2.83 8.79 85.04 0.75 3.58 16 8 N -0.48 -9.02 10.34 -194.67 -2.01 -11.04 16 9 C 0.14 2.19 10.97 84.72 0.93 3.12 16 10 C -0.10 -1.78 6.33 22.38 0.14 -1.64 16 11 Cl -0.03 -0.54 27.57 -2.72 -0.07 -0.62 16 12 C 0.01 0.12 5.95 -19.38 -0.12 0.00 16 13 C -0.12 -2.77 8.91 71.24 0.63 -2.13 16 14 C 0.15 5.14 3.44 46.18 0.16 5.30 16 15 H 0.12 3.40 7.81 -2.39 -0.02 3.38 16 16 C -0.14 -5.75 6.39 31.98 0.20 -5.55 16 17 C 0.16 8.41 5.89 86.86 0.51 8.92 16 18 N -0.62 -33.91 3.39 -691.98 -2.35 -36.26 16 19 C -0.23 -14.02 10.27 84.03 0.86 -13.16 16 20 H 0.07 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 22 N -0.95 -58.96 10.09 21.65 0.22 -58.74 16 23 Si 0.98 47.91 29.55 68.60 2.03 49.94 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 27 C 0.13 5.74 6.52 86.73 0.57 6.30 16 28 H 0.04 0.73 8.03 -2.39 -0.02 0.71 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 1.36 7.86 -2.39 -0.02 1.34 16 32 H 0.09 1.28 4.50 -2.39 -0.01 1.27 16 33 H 0.18 3.03 7.32 -2.91 -0.02 3.01 16 34 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 1.68 6.73 -2.39 -0.02 1.66 16 37 H 0.10 1.81 7.23 -2.39 -0.02 1.79 16 38 H 0.08 2.74 8.14 -2.39 -0.02 2.73 16 39 H 0.07 2.99 5.63 -2.39 -0.01 2.97 16 40 H 0.06 3.92 5.87 -2.39 -0.01 3.91 16 41 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 42 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.01 0.64 6.44 -2.39 -0.02 0.62 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -76.10 362.91 3.46 -72.64 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.02 Total: 9.93 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.70 Total: 15.07 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -6.17 Total: -123.83 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.07 Total: -0.62 kcal Total: -76.10 3.46 -72.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033866045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.835 kcal (2) G-P(sol) polarization free energy of solvation -76.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds