Wall clock time and date at job start Tue Mar 31 2020 20:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52699 * 2 1 4 4 C 1.53196 * 109.48804 * 239.90760 * 2 1 3 5 5 N 1.46924 * 108.76800 * 185.40124 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.60116 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.50697 * 109.47153 * 179.97438 * 8 6 5 10 10 C 1.38651 * 120.80080 * 264.72415 * 9 8 6 11 11 C 1.38185 * 119.18000 * 179.72945 * 10 9 8 12 12 N 1.31884 * 120.79441 * 0.55644 * 11 10 9 13 13 C 1.31839 * 121.73529 * 359.71704 * 12 11 10 14 14 C 1.38358 * 120.74975 * 359.97438 * 13 12 11 15 15 Cl 1.73598 * 120.43453 * 179.97438 * 14 13 12 16 16 C 1.46932 * 118.73828 * 53.61710 * 5 4 2 17 17 C 1.53196 * 108.77384 * 306.39467 * 16 5 4 18 18 C 1.53036 * 109.31536 * 54.63418 * 17 16 5 19 19 H 1.09007 * 109.46211 * 58.63452 * 18 17 16 20 20 N 1.46496 * 109.46261 * 178.61527 * 18 17 16 21 21 C 1.36945 * 119.99718 * 275.02605 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 H 1.09002 * 109.47271 * 299.92312 * 1 2 3 30 30 H 1.09001 * 109.46821 * 59.91874 * 1 2 3 31 31 H 1.08993 * 109.47267 * 179.91522 * 1 2 3 32 32 H 1.09005 * 109.57902 * 65.62432 * 4 2 1 33 33 H 1.08993 * 109.72026 * 305.26324 * 4 2 1 34 34 H 1.08990 * 109.47106 * 299.99661 * 8 6 5 35 35 H 1.09007 * 109.46881 * 59.99892 * 8 6 5 36 36 H 1.08005 * 120.40907 * 359.97438 * 10 9 8 37 37 H 1.08001 * 119.60388 * 180.27078 * 11 10 9 38 38 H 1.08005 * 119.62928 * 180.02562 * 13 12 11 39 39 H 1.08990 * 109.58621 * 186.60591 * 16 5 4 40 40 H 1.09004 * 109.69937 * 66.25035 * 16 5 4 41 41 H 1.08996 * 109.49437 * 294.68012 * 17 16 5 42 42 H 1.09000 * 109.52019 * 174.60075 * 17 16 5 43 43 H 0.96996 * 120.00499 * 95.02336 * 20 18 17 44 44 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 -1.2495 5 7 3.5043 -0.8292 -1.1697 6 6 4.2807 -0.3864 -2.1785 7 8 3.7725 0.1049 -3.1640 8 6 5.7802 -0.5017 -2.0818 9 6 6.4088 0.0610 -3.3304 10 6 6.7547 -0.7678 -4.3867 11 6 7.3241 -0.2153 -5.5181 12 7 7.5493 1.0818 -5.5961 13 6 7.2389 1.9000 -4.6100 14 6 6.6600 1.4204 -3.4484 15 17 6.2552 2.5050 -2.1549 16 6 4.1053 -1.4265 0.0307 17 6 3.5707 -0.6948 1.2659 18 6 2.0408 -0.7231 1.2484 19 1 1.6968 -1.7574 1.2352 20 7 1.5264 -0.0529 2.4453 21 6 1.3957 -0.7494 3.6171 22 1 1.6715 -1.7927 3.6588 23 6 0.9089 -0.1143 4.7513 24 7 0.5724 1.1572 4.7004 25 14 0.7300 -1.0644 6.3496 26 1 -0.6222 -1.6749 6.4139 27 1 1.7590 -2.1336 6.4078 28 1 0.9109 -0.1402 7.4978 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 1.7633 -0.1583 -2.1389 33 1 1.6053 -1.7219 -1.3005 34 1 6.1323 0.0561 -1.2142 35 1 6.0579 -1.5506 -1.9766 36 1 6.5777 -1.8316 -4.3276 37 1 7.5922 -0.8541 -6.3467 38 1 7.4379 2.9568 -4.7103 39 1 5.1894 -1.3242 -0.0139 40 1 3.8398 -2.4822 0.0880 41 1 3.9157 0.3391 1.2538 42 1 3.9335 -1.1888 2.1673 43 1 1.2785 0.8841 2.4078 44 1 0.2319 1.6009 5.4929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036184916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:12 Heat of formation + Delta-G solvation = 0.346160 kcal Electronic energy + Delta-G solvation = -26917.787707 eV Core-core repulsion = 23088.913575 eV Total energy + Delta-G solvation = -3828.874132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84334 -39.90458 -37.74422 -36.84687 -34.67660 -34.20407 -32.85851 -31.51931 -31.33958 -29.53171 -28.99503 -26.23315 -24.98035 -23.86417 -23.11924 -22.56333 -21.68898 -19.96971 -19.00784 -17.35294 -17.20767 -17.08354 -17.03891 -16.29659 -15.64954 -15.25008 -15.00097 -14.50206 -14.30939 -14.13551 -13.81673 -13.61920 -13.39278 -13.34627 -13.14827 -12.67581 -12.46078 -12.28312 -12.22467 -11.92090 -11.76201 -11.62283 -11.43247 -11.21001 -10.97480 -10.85531 -10.68002 -10.44950 -10.23376 -10.16435 -9.88632 -9.79808 -9.67186 -9.62744 -9.21271 -8.94619 -8.54122 -7.00771 -5.81416 -3.10393 0.63921 0.77617 1.81158 2.57260 2.97207 3.39120 3.40178 3.44352 3.46306 4.08891 4.11007 4.28466 4.46291 4.53795 4.59633 4.88760 4.95964 4.98076 5.19712 5.20970 5.23448 5.26146 5.30645 5.44885 5.48684 5.56690 5.64515 5.73614 5.76046 5.91963 6.04140 6.09945 6.17170 6.25460 6.33377 6.39688 6.47927 6.58527 6.76455 6.88325 7.00774 7.42147 7.52025 7.64382 8.13324 8.36723 9.48164 10.05512 10.40172 11.40994 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.002623 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.614481 B =10673.081223 C =10958.885760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.604 5.604 6 C 0.521 3.479 7 O -0.539 6.539 8 C -0.112 4.112 9 C -0.009 4.009 10 C -0.150 4.150 11 C 0.101 3.899 12 N -0.473 5.473 13 C 0.114 3.886 14 C -0.076 4.076 15 Cl -0.045 7.045 16 C 0.105 3.895 17 C -0.153 4.153 18 C 0.185 3.815 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.282 1.282 28 H -0.292 1.292 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.491 -4.434 -17.590 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.337 5.337 6 C 0.309 3.691 7 O -0.417 6.417 8 C -0.151 4.151 9 C -0.018 4.018 10 C -0.170 4.170 11 C -0.055 4.055 12 N -0.182 5.182 13 C -0.044 4.044 14 C -0.105 4.105 15 Cl -0.017 7.017 16 C -0.018 4.018 17 C -0.194 4.194 18 C 0.074 3.926 19 H 0.066 0.934 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.208 1.208 28 H -0.218 1.218 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.161 0.839 37 H 0.180 0.820 38 H 0.182 0.818 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.537 -3.860 -18.588 23.317 hybrid contribution -0.573 -0.455 2.051 2.177 sum 12.964 -4.315 -16.537 21.452 Atomic orbital electron populations 1.21656 0.94093 1.01752 1.01883 1.21743 0.96606 1.00058 0.94578 0.91255 1.21715 0.78191 1.00812 0.99421 1.48126 1.07255 1.60308 1.17967 1.20100 0.88187 0.78004 0.82857 1.90710 1.75215 1.44569 1.31179 1.20809 0.93490 1.04032 0.96810 1.19652 0.94755 0.91627 0.95781 1.22034 1.00067 1.01346 0.93508 1.22825 0.94410 0.91365 0.96947 1.67798 1.17135 1.04840 1.28399 1.22758 0.94056 1.00464 0.87119 1.22010 1.03701 0.91640 0.93168 1.98408 1.92282 1.62987 1.47975 1.21910 0.97499 0.97548 0.84873 1.22698 1.00510 1.00443 0.95746 1.20181 0.90283 0.95682 0.86440 0.93423 1.42409 1.76465 1.11419 1.05764 1.19200 1.36031 0.94051 0.87687 0.91246 1.24734 1.02050 0.96004 0.98066 1.69660 1.49899 1.09468 1.28946 0.86228 0.77789 0.78675 0.83698 1.21755 1.20810 1.21837 0.90726 0.93833 0.93053 0.89404 0.91556 0.86871 0.87098 0.83936 0.81996 0.81826 0.90595 0.91231 0.92136 0.90472 0.78209 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.03 37.15 0.34 -1.84 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.99 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.70 5.72 -3.71 -0.02 1.68 16 5 N -0.60 -7.88 2.97 -172.76 -0.51 -8.40 16 6 C 0.52 6.93 7.69 -10.98 -0.08 6.84 16 7 O -0.54 -8.98 15.45 5.56 0.09 -8.90 16 8 C -0.11 -1.10 3.77 -29.03 -0.11 -1.21 16 9 C -0.01 -0.10 4.41 -104.29 -0.46 -0.56 16 10 C -0.15 -1.31 9.80 -39.45 -0.39 -1.70 16 11 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 12 N -0.47 -5.11 10.36 -13.22 -0.14 -5.25 16 13 C 0.11 1.20 10.99 -17.50 -0.19 1.01 16 14 C -0.08 -0.86 6.34 -39.35 -0.25 -1.10 16 15 Cl -0.05 -0.53 27.58 -51.86 -1.43 -1.96 16 16 C 0.10 1.22 6.34 -3.70 -0.02 1.20 16 17 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 18 C 0.18 3.34 2.19 -67.89 -0.15 3.19 16 19 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 20 N -0.72 -16.85 4.41 -53.38 -0.24 -17.09 16 21 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 25 Si 0.90 21.72 29.55 -169.99 -5.02 16.69 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.11 1.07 6.79 -51.93 -0.35 0.71 16 35 H 0.11 0.76 7.87 -51.93 -0.41 0.35 16 36 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 37 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.38 9.79 7.50 -40.82 -0.31 9.48 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -32.02 373.56 -9.37 -41.40 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.32 Total: 7.66 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.16 Total: -3.16 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.16 Total: -57.36 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.02 -9.37 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036184916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.741 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds