Wall clock time and date at job start Tue Mar 31 2020 20:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52699 * 2 1 4 4 C 1.53196 * 109.48804 * 239.90760 * 2 1 3 5 5 N 1.46924 * 108.76800 * 185.40124 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.60116 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.50697 * 109.47153 * 179.97438 * 8 6 5 10 10 C 1.38651 * 120.80080 * 264.72415 * 9 8 6 11 11 C 1.38185 * 119.18000 * 179.72945 * 10 9 8 12 12 N 1.31884 * 120.79441 * 0.55644 * 11 10 9 13 13 C 1.31839 * 121.73529 * 359.71704 * 12 11 10 14 14 C 1.38358 * 120.74975 * 359.97438 * 13 12 11 15 15 Cl 1.73598 * 120.43453 * 179.97438 * 14 13 12 16 16 C 1.46932 * 118.73828 * 53.61710 * 5 4 2 17 17 C 1.53196 * 108.77384 * 306.39467 * 16 5 4 18 18 C 1.53036 * 109.31536 * 54.63418 * 17 16 5 19 19 H 1.09007 * 109.46211 * 58.63452 * 18 17 16 20 20 N 1.46496 * 109.46261 * 178.61527 * 18 17 16 21 21 C 1.36945 * 119.99718 * 275.02605 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 H 1.09002 * 109.47271 * 299.92312 * 1 2 3 30 30 H 1.09001 * 109.46821 * 59.91874 * 1 2 3 31 31 H 1.08993 * 109.47267 * 179.91522 * 1 2 3 32 32 H 1.09005 * 109.57902 * 65.62432 * 4 2 1 33 33 H 1.08993 * 109.72026 * 305.26324 * 4 2 1 34 34 H 1.08990 * 109.47106 * 299.99661 * 8 6 5 35 35 H 1.09007 * 109.46881 * 59.99892 * 8 6 5 36 36 H 1.08005 * 120.40907 * 359.97438 * 10 9 8 37 37 H 1.08001 * 119.60388 * 180.27078 * 11 10 9 38 38 H 1.08005 * 119.62928 * 180.02562 * 13 12 11 39 39 H 1.08990 * 109.58621 * 186.60591 * 16 5 4 40 40 H 1.09004 * 109.69937 * 66.25035 * 16 5 4 41 41 H 1.08996 * 109.49437 * 294.68012 * 17 16 5 42 42 H 1.09000 * 109.52019 * 174.60075 * 17 16 5 43 43 H 0.96996 * 120.00499 * 95.02336 * 20 18 17 44 44 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 -1.2495 5 7 3.5043 -0.8292 -1.1697 6 6 4.2807 -0.3864 -2.1785 7 8 3.7725 0.1049 -3.1640 8 6 5.7802 -0.5017 -2.0818 9 6 6.4088 0.0610 -3.3304 10 6 6.7547 -0.7678 -4.3867 11 6 7.3241 -0.2153 -5.5181 12 7 7.5493 1.0818 -5.5961 13 6 7.2389 1.9000 -4.6100 14 6 6.6600 1.4204 -3.4484 15 17 6.2552 2.5050 -2.1549 16 6 4.1053 -1.4265 0.0307 17 6 3.5707 -0.6948 1.2659 18 6 2.0408 -0.7231 1.2484 19 1 1.6968 -1.7574 1.2352 20 7 1.5264 -0.0529 2.4453 21 6 1.3957 -0.7494 3.6171 22 1 1.6715 -1.7927 3.6588 23 6 0.9089 -0.1143 4.7513 24 7 0.5724 1.1572 4.7004 25 14 0.7300 -1.0644 6.3496 26 1 -0.6222 -1.6749 6.4139 27 1 1.7590 -2.1336 6.4078 28 1 0.9109 -0.1402 7.4978 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 1.7633 -0.1583 -2.1389 33 1 1.6053 -1.7219 -1.3005 34 1 6.1323 0.0561 -1.2142 35 1 6.0579 -1.5506 -1.9766 36 1 6.5777 -1.8316 -4.3276 37 1 7.5922 -0.8541 -6.3467 38 1 7.4379 2.9568 -4.7103 39 1 5.1894 -1.3242 -0.0139 40 1 3.8398 -2.4822 0.0880 41 1 3.9157 0.3391 1.2538 42 1 3.9335 -1.1888 2.1673 43 1 1.2785 0.8841 2.4078 44 1 0.2319 1.6009 5.4929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036184916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:10 Heat of formation + Delta-G solvation = -19.062125 kcal Electronic energy + Delta-G solvation = -26918.629314 eV Core-core repulsion = 23088.913575 eV Total energy + Delta-G solvation = -3829.715738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69427 -40.86854 -39.00755 -37.67816 -36.16506 -35.06209 -34.33916 -33.02846 -32.03796 -31.05991 -29.97113 -27.43090 -26.55708 -24.57713 -24.50567 -23.49978 -23.04231 -21.25786 -20.13682 -19.02587 -18.28274 -17.92554 -17.89671 -17.07175 -16.76499 -16.59667 -16.27357 -15.71394 -15.47199 -15.29635 -14.97565 -14.93230 -14.65002 -14.37684 -14.14209 -13.93238 -13.54513 -13.45467 -13.13683 -13.05409 -12.91936 -12.85571 -12.73070 -12.62653 -12.45095 -12.28136 -12.14018 -12.02772 -11.84073 -11.65493 -11.14166 -11.11412 -10.85692 -10.61834 -10.49885 -9.96272 -9.65438 -8.95428 -7.90342 -5.17846 -0.07987 0.05190 1.01048 1.49055 1.49871 1.57572 1.58091 2.00022 2.58584 2.66472 3.34734 3.43301 3.46106 3.54679 3.63787 3.80700 3.88021 3.91583 4.04351 4.11434 4.19879 4.31778 4.36956 4.41460 4.49657 4.53561 4.63638 4.67508 4.75618 4.80206 4.83917 4.85691 4.99915 5.02540 5.06930 5.19546 5.33179 5.40755 5.51806 5.52463 5.57490 5.65389 6.30990 6.40780 6.81659 7.12295 7.37452 8.14221 8.36731 9.33374 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.002623 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.614481 B =10673.081223 C =10958.885760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.048 0.952 4 C 0.129 3.871 5 N -0.606 5.606 6 C 0.520 3.480 7 O -0.576 6.576 8 C -0.107 4.107 9 C -0.024 4.024 10 C -0.145 4.145 11 C 0.097 3.903 12 N -0.493 5.493 13 C 0.102 3.898 14 C -0.092 4.092 15 Cl -0.060 7.060 16 C 0.112 3.888 17 C -0.145 4.145 18 C 0.179 3.821 19 H 0.050 0.950 20 N -0.733 5.733 21 C -0.227 4.227 22 H 0.080 0.920 23 C -0.079 4.079 24 N -0.973 5.973 25 Si 0.967 3.033 26 H -0.291 1.291 27 H -0.266 1.266 28 H -0.302 1.302 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.150 0.850 36 H 0.175 0.825 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.369 0.631 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.074 -7.407 -18.834 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.066 0.934 4 C 0.006 3.994 5 N -0.338 5.338 6 C 0.309 3.691 7 O -0.456 6.456 8 C -0.146 4.146 9 C -0.033 4.033 10 C -0.164 4.164 11 C -0.059 4.059 12 N -0.203 5.203 13 C -0.055 4.055 14 C -0.121 4.121 15 Cl -0.031 7.031 16 C -0.010 4.010 17 C -0.186 4.186 18 C 0.071 3.929 19 H 0.068 0.932 20 N -0.372 5.372 21 C -0.359 4.359 22 H 0.098 0.902 23 C -0.271 4.271 24 N -0.624 5.624 25 Si 0.797 3.203 26 H -0.218 1.218 27 H -0.191 1.191 28 H -0.229 1.229 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.168 0.832 36 H 0.192 0.808 37 H 0.211 0.789 38 H 0.190 0.810 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.200 0.800 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.160 -6.882 -19.858 25.914 hybrid contribution -1.052 0.441 2.306 2.573 sum 14.108 -6.440 -17.552 23.422 Atomic orbital electron populations 1.21574 0.94184 1.02041 1.01014 1.21607 0.96523 0.98954 0.94943 0.93393 1.21547 0.79298 1.01225 0.97359 1.48190 1.06790 1.60315 1.18458 1.20668 0.89547 0.76761 0.82074 1.90699 1.76187 1.46029 1.32718 1.20865 0.90499 1.06508 0.96723 1.19896 0.95166 0.91522 0.96727 1.22410 0.98760 1.02742 0.92531 1.23425 0.93429 0.91023 0.98004 1.67840 1.17862 1.05974 1.28595 1.22949 0.94259 1.01170 0.87131 1.22165 1.04741 0.92091 0.93126 1.98398 1.92493 1.63624 1.48614 1.21973 0.99257 0.97772 0.81996 1.22488 0.98184 1.00054 0.97841 1.20436 0.91921 0.95307 0.85228 0.93152 1.42619 1.76901 1.10817 1.06821 1.19602 1.33479 0.94402 0.88382 0.90237 1.25497 1.03353 0.96886 1.01354 1.69827 1.52186 1.11173 1.29221 0.85223 0.77849 0.77512 0.79707 1.21843 1.19067 1.22918 0.94232 0.92017 0.92118 0.90250 0.89660 0.86488 0.83181 0.80766 0.78905 0.80967 0.87145 0.88910 0.93922 0.91260 0.79963 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.03 71.98 0.65 -3.53 16 2 C -0.10 -3.19 2.46 -10.71 -0.03 -3.21 16 3 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 4 C 0.13 3.37 5.72 86.36 0.49 3.86 16 5 N -0.61 -14.17 2.97 -818.88 -2.43 -16.61 16 6 C 0.52 12.52 7.69 87.66 0.67 13.19 16 7 O -0.58 -18.36 15.45 -3.04 -0.05 -18.41 16 8 C -0.11 -1.74 3.77 29.10 0.11 -1.63 16 9 C -0.02 -0.45 4.41 -19.65 -0.09 -0.53 16 10 C -0.14 -2.05 9.80 22.36 0.22 -1.83 16 11 C 0.10 1.46 11.18 84.67 0.95 2.40 16 12 N -0.49 -9.97 10.36 -195.74 -2.03 -12.00 16 13 C 0.10 2.09 10.99 84.72 0.93 3.02 16 14 C -0.09 -1.98 6.34 22.42 0.14 -1.84 16 15 Cl -0.06 -1.39 27.58 -2.72 -0.08 -1.46 16 16 C 0.11 2.21 6.34 86.36 0.55 2.76 16 17 C -0.14 -4.31 5.66 30.67 0.17 -4.14 16 18 C 0.18 6.37 2.19 45.02 0.10 6.47 16 19 H 0.05 1.78 8.08 -2.38 -0.02 1.76 16 20 N -0.73 -34.80 4.41 -322.81 -1.42 -36.22 16 21 C -0.23 -11.87 9.93 84.03 0.83 -11.03 16 22 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 24 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 25 Si 0.97 44.99 29.55 68.60 2.03 47.01 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 29 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.27 7.01 -2.38 -0.02 2.25 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.12 1.85 6.79 -2.39 -0.02 1.84 16 35 H 0.15 1.23 7.87 -2.38 -0.02 1.21 16 36 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 37 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 39 H 0.11 1.48 5.93 -2.39 -0.01 1.46 16 40 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.37 19.57 7.50 -92.71 -0.70 18.88 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -71.80 373.56 2.80 -69.00 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.32 Total: 27.26 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 6.17 Total: 0.03 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -5.60 Total: -123.43 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.05 Total: -18.41 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.46 kcal Total: -71.80 2.80 -69.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036184916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.934 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds