Wall clock time and date at job start Tue Mar 31 2020 20:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58304 * 2 1 4 4 C 1.53188 * 109.58471 * 120.42968 * 2 1 3 5 5 C 1.53042 * 109.31142 * 174.42135 * 4 2 1 6 6 H 1.09007 * 109.44903 * 58.64963 * 5 4 2 7 7 N 1.46494 * 109.46283 * 178.61274 * 5 4 2 8 8 C 1.36945 * 120.00317 * 205.06874 * 7 5 4 9 9 H 1.08000 * 119.99649 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00301 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99980 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00202 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47169 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47232 * 59.99643 * 12 10 8 15 15 H 1.48500 * 109.47074 * 299.99871 * 12 10 8 16 16 C 1.53040 * 109.53776 * 298.63508 * 5 4 2 17 17 C 1.53199 * 109.31117 * 61.36392 * 16 5 4 18 18 N 1.46923 * 108.77523 * 305.36339 * 17 16 5 19 19 C 1.34776 * 120.63287 * 233.63041 * 18 17 16 20 20 O 1.21276 * 120.00017 * 174.95104 * 19 18 17 21 21 C 1.50699 * 119.99623 * 354.95449 * 19 18 17 22 22 C 1.50706 * 109.47015 * 179.97438 * 21 19 18 23 23 C 1.38648 * 120.79094 * 99.99628 * 22 21 19 24 24 C 1.38195 * 119.17571 * 179.97438 * 23 22 21 25 25 N 1.31883 * 120.78932 * 0.02562 * 24 23 22 26 26 C 1.31841 * 121.74325 * 0.02562 * 25 24 23 27 27 C 1.38349 * 120.74494 * 359.74249 * 26 25 24 28 28 Cl 1.73602 * 120.43559 * 180.28955 * 27 26 25 29 29 H 1.08999 * 109.47085 * 175.94779 * 1 2 3 30 30 H 1.09009 * 109.46881 * 295.94205 * 1 2 3 31 31 H 1.08996 * 109.47090 * 55.94021 * 1 2 3 32 32 H 1.08991 * 109.50117 * 54.47404 * 4 2 1 33 33 H 1.08998 * 109.50275 * 294.36887 * 4 2 1 34 34 H 0.96998 * 120.00461 * 25.06977 * 7 5 4 35 35 H 0.97003 * 119.99757 * 359.97438 * 11 10 8 36 36 H 1.09004 * 109.49531 * 181.31329 * 16 5 4 37 37 H 1.08992 * 109.49838 * 301.37974 * 16 5 4 38 38 H 1.08998 * 109.58526 * 65.15591 * 17 16 5 39 39 H 1.08998 * 109.58180 * 185.57474 * 17 16 5 40 40 H 1.08996 * 109.47454 * 299.99922 * 21 19 18 41 41 H 1.09004 * 109.47207 * 59.99929 * 21 19 18 42 42 H 1.07997 * 120.41620 * 359.96002 * 23 22 21 43 43 H 1.07993 * 119.60185 * 180.02562 * 24 23 22 44 44 H 1.08003 * 119.62590 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 1 4.0060 0.1460 1.0994 7 7 4.0652 -1.5188 2.3733 8 6 5.3494 -1.3012 2.7965 9 1 5.9953 -0.6365 2.2421 10 6 5.8211 -1.9358 3.9373 11 7 5.0341 -2.7462 4.6127 12 14 7.5725 -1.6385 4.5149 13 1 7.8284 -2.4279 5.7463 14 1 7.7598 -0.1940 4.8043 15 1 8.5219 -2.0576 3.4527 16 6 3.9569 -1.6656 -0.0657 17 6 3.4650 -0.9452 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1672 -1.1041 -2.1546 20 8 -0.0282 -0.9767 -1.9947 21 6 1.6965 -1.7167 -3.4257 22 6 0.5437 -2.0824 -4.3249 23 6 0.1808 -1.2627 -5.3826 24 6 -0.8814 -1.6307 -6.1865 25 7 -1.5471 -2.7457 -5.9569 26 6 -1.2317 -3.5493 -4.9604 27 6 -0.1773 -3.2492 -4.1164 28 17 0.2357 -4.3169 -2.8113 29 1 -0.3633 -1.0251 -0.0726 30 1 -0.3633 0.4496 0.9242 31 1 -0.3633 0.5755 -0.8513 32 1 1.6030 -1.7269 1.2891 33 1 1.7661 -0.1696 2.1366 34 1 3.4853 -2.1161 2.8711 35 1 4.1243 -2.8997 4.3134 36 1 5.0412 -1.7694 -0.1060 37 1 3.4988 -2.6530 -0.0084 38 1 3.9903 0.0039 -1.4317 39 1 3.6518 -1.5689 -2.1992 40 1 2.3408 -0.9994 -3.9340 41 1 2.2686 -2.6131 -3.1863 42 1 0.7213 -0.3479 -5.5758 43 1 -1.1697 -0.9975 -7.0124 44 1 -1.8000 -4.4543 -4.8040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044746876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:53 Heat of formation + Delta-G solvation = 17.323793 kcal Electronic energy + Delta-G solvation = -27153.064803 eV Core-core repulsion = 23324.926877 eV Total energy + Delta-G solvation = -3828.137926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.96913 -40.12792 -37.56644 -36.85491 -34.79540 -34.43686 -32.65467 -32.11001 -31.35981 -29.39751 -28.46593 -26.95926 -24.19855 -23.88731 -23.27653 -23.07065 -21.59717 -20.32979 -19.04801 -17.34203 -17.26836 -17.16240 -16.86943 -16.34437 -15.83345 -15.45795 -14.87589 -14.56907 -14.34566 -14.17860 -13.88862 -13.71203 -13.57259 -13.33542 -13.15953 -12.93048 -12.58519 -12.27533 -12.20822 -12.12601 -11.91657 -11.68830 -11.47352 -11.43944 -10.89051 -10.87841 -10.62008 -10.49926 -10.14446 -10.02620 -9.99993 -9.90284 -9.25143 -9.23449 -9.02615 -8.96055 -8.50269 -7.09888 -6.14506 -3.15239 0.61716 0.75127 1.79984 2.55284 2.91502 3.37093 3.47745 3.51024 3.68851 4.06515 4.08559 4.25697 4.43392 4.57305 4.61660 4.86051 4.90881 4.95075 5.05884 5.16735 5.17624 5.23473 5.24323 5.38268 5.43640 5.49587 5.58794 5.71469 5.72668 5.80497 5.92182 6.02512 6.09565 6.14575 6.24484 6.33545 6.35812 6.41539 6.65834 6.78660 6.92341 7.42196 7.49752 7.74899 8.14853 8.70894 9.17447 10.03960 10.18961 11.33649 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.002665 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.680499 B =10502.275211 C =10791.860623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.149 3.851 3 H 0.071 0.929 4 C -0.136 4.136 5 C 0.185 3.815 6 H 0.048 0.952 7 N -0.735 5.735 8 C -0.332 4.332 9 H 0.064 0.936 10 C -0.045 4.045 11 N -0.943 5.943 12 Si 1.079 2.921 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.295 1.295 16 C -0.151 4.151 17 C 0.106 3.894 18 N -0.601 5.601 19 C 0.521 3.479 20 O -0.528 6.528 21 C -0.114 4.114 22 C -0.009 4.009 23 C -0.151 4.151 24 C 0.101 3.899 25 N -0.473 5.473 26 C 0.114 3.886 27 C -0.074 4.074 28 Cl -0.046 7.046 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.367 0.633 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 3.165 -22.006 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.046 3.954 3 H 0.089 0.911 4 C -0.175 4.175 5 C 0.075 3.925 6 H 0.066 0.934 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.082 0.918 10 C -0.242 4.242 11 N -0.588 5.588 12 Si 0.910 3.090 13 H -0.210 1.210 14 H -0.223 1.223 15 H -0.223 1.223 16 C -0.192 4.192 17 C -0.017 4.017 18 N -0.335 5.335 19 C 0.308 3.692 20 O -0.405 6.405 21 C -0.154 4.154 22 C -0.018 4.018 23 C -0.171 4.171 24 C -0.056 4.056 25 N -0.182 5.182 26 C -0.044 4.044 27 C -0.103 4.103 28 Cl -0.017 7.017 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.160 0.840 43 H 0.180 0.820 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.051 2.684 -21.242 23.245 hybrid contribution -0.279 0.304 -0.367 0.552 sum -9.331 2.988 -21.609 23.726 Atomic orbital electron populations 1.22194 0.92746 1.03734 1.00363 1.21301 0.95464 0.94929 0.83701 0.91125 1.22309 0.97547 1.00914 0.96729 1.20088 0.90750 0.94936 0.86761 0.93352 1.42442 1.13089 1.54643 1.27505 1.20012 0.89612 1.26310 1.10367 0.91773 1.25770 1.06267 0.97542 0.94662 1.70882 1.08171 1.38273 1.41463 0.83255 0.74123 0.75491 0.76152 1.21035 1.22253 1.22278 1.22656 1.01804 0.99930 0.94785 1.21889 0.79519 1.00630 0.99671 1.48173 1.07612 1.57574 1.20145 1.20079 0.86562 0.78383 0.84132 1.90780 1.15311 1.55247 1.79193 1.20868 0.96615 1.03730 0.94179 1.19649 0.95299 0.92195 0.94660 1.22038 0.99162 1.00426 0.95477 1.22825 0.91399 0.93123 0.98245 1.67796 1.28159 1.04497 1.17718 1.22754 0.93103 0.98905 0.89651 1.21990 0.99527 0.94637 0.94102 1.98409 1.92681 1.63511 1.47068 0.91050 0.93964 0.91455 0.91908 0.90746 0.80024 0.93346 0.90513 0.92303 0.91252 0.90494 0.87243 0.87062 0.83956 0.82023 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.59 37.16 0.28 -1.59 16 2 C 0.15 2.08 3.49 -67.60 -0.24 1.84 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -2.22 4.84 -26.61 -0.13 -2.35 16 5 C 0.18 3.46 2.73 -67.89 -0.19 3.28 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 N -0.74 -17.78 5.12 -53.39 -0.27 -18.05 16 8 C -0.33 -9.02 9.93 -15.06 -0.15 -9.17 16 9 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 10 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 11 N -0.94 -28.86 13.70 55.49 0.76 -28.10 16 12 Si 1.08 25.41 29.92 -169.99 -5.09 20.32 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.30 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 16 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 17 C 0.11 1.25 6.33 -3.71 -0.02 1.23 16 18 N -0.60 -7.73 2.97 -165.22 -0.49 -8.22 16 19 C 0.52 6.61 7.49 -10.99 -0.08 6.53 16 20 O -0.53 -8.05 11.37 5.56 0.06 -7.99 16 21 C -0.11 -1.08 3.75 -29.03 -0.11 -1.19 16 22 C -0.01 -0.09 4.45 -104.28 -0.46 -0.55 16 23 C -0.15 -1.27 9.78 -39.45 -0.39 -1.65 16 24 C 0.10 0.86 11.18 -17.55 -0.20 0.67 16 25 N -0.47 -5.03 10.36 -13.22 -0.14 -5.16 16 26 C 0.11 1.18 10.99 -17.51 -0.19 0.99 16 27 C -0.07 -0.81 6.26 -39.36 -0.25 -1.06 16 28 Cl -0.05 -0.53 27.60 -51.86 -1.43 -1.96 16 29 H 0.07 1.14 6.73 -51.93 -0.35 0.79 16 30 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.07 0.97 6.77 -51.93 -0.35 0.62 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.37 9.34 6.63 -40.82 -0.27 9.06 16 35 H 0.26 7.72 6.77 -40.82 -0.28 7.44 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.71 5.96 -51.93 -0.31 0.40 16 40 H 0.11 0.74 8.01 -51.93 -0.42 0.32 16 41 H 0.11 1.02 6.79 -51.93 -0.35 0.67 16 42 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -33.06 367.06 -9.61 -42.66 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.18 Total: 7.94 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.36 Total: -6.97 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.14 Total: -59.53 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.06 Total: -7.99 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.09 Total: 20.32 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.06 -9.61 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044746876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.987 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds