Wall clock time and date at job start Tue Mar 31 2020 20:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58304 * 2 1 4 4 C 1.53188 * 109.58471 * 120.42968 * 2 1 3 5 5 C 1.53042 * 109.31142 * 174.42135 * 4 2 1 6 6 H 1.09007 * 109.44903 * 58.64963 * 5 4 2 7 7 N 1.46494 * 109.46283 * 178.61274 * 5 4 2 8 8 C 1.36945 * 120.00317 * 205.06874 * 7 5 4 9 9 H 1.08000 * 119.99649 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00301 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99980 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00202 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47169 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47232 * 59.99643 * 12 10 8 15 15 H 1.48500 * 109.47074 * 299.99871 * 12 10 8 16 16 C 1.53040 * 109.53776 * 298.63508 * 5 4 2 17 17 C 1.53199 * 109.31117 * 61.36392 * 16 5 4 18 18 N 1.46923 * 108.77523 * 305.36339 * 17 16 5 19 19 C 1.34776 * 120.63287 * 233.63041 * 18 17 16 20 20 O 1.21276 * 120.00017 * 174.95104 * 19 18 17 21 21 C 1.50699 * 119.99623 * 354.95449 * 19 18 17 22 22 C 1.50706 * 109.47015 * 179.97438 * 21 19 18 23 23 C 1.38648 * 120.79094 * 99.99628 * 22 21 19 24 24 C 1.38195 * 119.17571 * 179.97438 * 23 22 21 25 25 N 1.31883 * 120.78932 * 0.02562 * 24 23 22 26 26 C 1.31841 * 121.74325 * 0.02562 * 25 24 23 27 27 C 1.38349 * 120.74494 * 359.74249 * 26 25 24 28 28 Cl 1.73602 * 120.43559 * 180.28955 * 27 26 25 29 29 H 1.08999 * 109.47085 * 175.94779 * 1 2 3 30 30 H 1.09009 * 109.46881 * 295.94205 * 1 2 3 31 31 H 1.08996 * 109.47090 * 55.94021 * 1 2 3 32 32 H 1.08991 * 109.50117 * 54.47404 * 4 2 1 33 33 H 1.08998 * 109.50275 * 294.36887 * 4 2 1 34 34 H 0.96998 * 120.00461 * 25.06977 * 7 5 4 35 35 H 0.97003 * 119.99757 * 359.97438 * 11 10 8 36 36 H 1.09004 * 109.49531 * 181.31329 * 16 5 4 37 37 H 1.08992 * 109.49838 * 301.37974 * 16 5 4 38 38 H 1.08998 * 109.58526 * 65.15591 * 17 16 5 39 39 H 1.08998 * 109.58180 * 185.57474 * 17 16 5 40 40 H 1.08996 * 109.47454 * 299.99922 * 21 19 18 41 41 H 1.09004 * 109.47207 * 59.99929 * 21 19 18 42 42 H 1.07997 * 120.41620 * 359.96002 * 23 22 21 43 43 H 1.07993 * 119.60185 * 180.02562 * 24 23 22 44 44 H 1.08003 * 119.62590 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 1 4.0060 0.1460 1.0994 7 7 4.0652 -1.5188 2.3733 8 6 5.3494 -1.3012 2.7965 9 1 5.9953 -0.6365 2.2421 10 6 5.8211 -1.9358 3.9373 11 7 5.0341 -2.7462 4.6127 12 14 7.5725 -1.6385 4.5149 13 1 7.8284 -2.4279 5.7463 14 1 7.7598 -0.1940 4.8043 15 1 8.5219 -2.0576 3.4527 16 6 3.9569 -1.6656 -0.0657 17 6 3.4650 -0.9452 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1672 -1.1041 -2.1546 20 8 -0.0282 -0.9767 -1.9947 21 6 1.6965 -1.7167 -3.4257 22 6 0.5437 -2.0824 -4.3249 23 6 0.1808 -1.2627 -5.3826 24 6 -0.8814 -1.6307 -6.1865 25 7 -1.5471 -2.7457 -5.9569 26 6 -1.2317 -3.5493 -4.9604 27 6 -0.1773 -3.2492 -4.1164 28 17 0.2357 -4.3169 -2.8113 29 1 -0.3633 -1.0251 -0.0726 30 1 -0.3633 0.4496 0.9242 31 1 -0.3633 0.5755 -0.8513 32 1 1.6030 -1.7269 1.2891 33 1 1.7661 -0.1696 2.1366 34 1 3.4853 -2.1161 2.8711 35 1 4.1243 -2.8997 4.3134 36 1 5.0412 -1.7694 -0.1060 37 1 3.4988 -2.6530 -0.0084 38 1 3.9903 0.0039 -1.4317 39 1 3.6518 -1.5689 -2.1992 40 1 2.3408 -0.9994 -3.9340 41 1 2.2686 -2.6131 -3.1863 42 1 0.7213 -0.3479 -5.5758 43 1 -1.1697 -0.9975 -7.0124 44 1 -1.8000 -4.4543 -4.8040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044746876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:51 Heat of formation + Delta-G solvation = -2.987822 kcal Electronic energy + Delta-G solvation = -27153.945581 eV Core-core repulsion = 23324.926877 eV Total energy + Delta-G solvation = -3829.018704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.86388 -41.00616 -38.83520 -37.68216 -36.45260 -35.26958 -33.94336 -33.58766 -32.04392 -30.90831 -29.49678 -28.22933 -25.86580 -24.62149 -24.57746 -24.16265 -22.67336 -21.70683 -20.14904 -19.31719 -18.04015 -17.92765 -17.82853 -17.14976 -16.86984 -16.77663 -16.26197 -15.90232 -15.43365 -15.38089 -15.03128 -14.98307 -14.83630 -14.43028 -14.26081 -13.82964 -13.56691 -13.34879 -13.31554 -13.19566 -13.04928 -12.82573 -12.67662 -12.53059 -12.41241 -12.29679 -12.09741 -11.97774 -11.88036 -11.63519 -11.18651 -10.89292 -10.75848 -10.61712 -10.06991 -9.96876 -9.60887 -9.12434 -8.37467 -5.32000 -0.08559 0.04398 1.00930 1.58677 1.59703 1.68762 1.84552 1.94715 2.65164 2.72339 3.34233 3.41221 3.44599 3.50099 3.59733 3.64728 3.83972 3.90223 3.97412 4.03664 4.17135 4.19875 4.27232 4.36663 4.49139 4.51558 4.54812 4.61096 4.62693 4.68640 4.77350 4.81430 4.93766 4.98263 5.05553 5.10278 5.19835 5.35651 5.44395 5.51207 5.61440 5.65501 6.42659 6.49425 6.80912 7.09589 7.16782 7.99276 8.12977 9.14214 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.002665 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.680499 B =10502.275211 C =10791.860623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.155 3.845 3 H 0.088 0.912 4 C -0.124 4.124 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.751 5.751 8 C -0.323 4.323 9 H 0.072 0.928 10 C -0.109 4.109 11 N -0.980 5.980 12 Si 1.126 2.874 13 H -0.298 1.298 14 H -0.277 1.277 15 H -0.275 1.275 16 C -0.141 4.141 17 C 0.115 3.885 18 N -0.604 5.604 19 C 0.519 3.481 20 O -0.556 6.556 21 C -0.109 4.109 22 C -0.023 4.023 23 C -0.145 4.145 24 C 0.097 3.903 25 N -0.494 5.494 26 C 0.101 3.899 27 C -0.089 4.089 28 Cl -0.062 7.062 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.355 0.645 35 H 0.242 0.758 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.176 0.824 43 H 0.194 0.806 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 5.176 -24.760 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 H 0.105 0.895 4 C -0.163 4.163 5 C 0.071 3.929 6 H 0.067 0.933 7 N -0.392 5.392 8 C -0.454 4.454 9 H 0.090 0.910 10 C -0.300 4.300 11 N -0.629 5.629 12 Si 0.951 3.049 13 H -0.224 1.224 14 H -0.203 1.203 15 H -0.201 1.201 16 C -0.182 4.182 17 C -0.008 4.008 18 N -0.337 5.337 19 C 0.308 3.692 20 O -0.435 6.435 21 C -0.148 4.148 22 C -0.032 4.032 23 C -0.164 4.164 24 C -0.059 4.059 25 N -0.203 5.203 26 C -0.056 4.056 27 C -0.118 4.118 28 Cl -0.033 7.033 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.186 0.814 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.165 0.835 41 H 0.133 0.867 42 H 0.193 0.807 43 H 0.210 0.790 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.976 4.719 -24.067 25.789 hybrid contribution -0.716 -0.269 0.401 0.864 sum -8.691 4.450 -23.666 25.601 Atomic orbital electron populations 1.22028 0.92789 1.02279 1.00635 1.21193 0.95261 0.95392 0.83042 0.89453 1.22160 0.95864 1.00223 0.98094 1.20357 0.91996 0.94685 0.85902 0.93342 1.42711 1.12273 1.54941 1.29310 1.20371 0.90641 1.24767 1.09610 0.91030 1.27181 1.09487 0.97732 0.95604 1.70998 1.08069 1.40849 1.42934 0.82643 0.70462 0.76122 0.75634 1.22436 1.20298 1.20119 1.22431 1.01010 0.99046 0.95701 1.21927 0.78767 1.01809 0.98292 1.48212 1.08144 1.57556 1.19822 1.20609 0.86126 0.77613 0.84850 1.90777 1.16615 1.56196 1.79900 1.20907 0.96827 1.04539 0.92543 1.19880 0.95611 0.92183 0.95486 1.22415 0.98820 1.00926 0.94259 1.23425 0.91003 0.92629 0.98862 1.67835 1.29029 1.05484 1.17959 1.22921 0.93324 0.99490 0.89857 1.22137 1.00385 0.95226 0.94059 1.98399 1.92814 1.64191 1.47923 0.93310 0.93366 0.91453 0.93665 0.91636 0.81379 0.94777 0.91611 0.94092 0.89005 0.87077 0.83471 0.86686 0.80683 0.78951 0.81170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 7.59 71.98 0.55 -2.74 16 2 C 0.15 4.07 3.49 44.97 0.16 4.23 16 3 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.12 -4.07 4.84 30.67 0.15 -3.92 16 5 C 0.18 6.62 2.73 45.02 0.12 6.74 16 6 H 0.05 1.80 8.08 -2.38 -0.02 1.79 16 7 N -0.75 -36.97 5.12 -322.81 -1.65 -38.62 16 8 C -0.32 -17.53 9.93 84.03 0.83 -16.70 16 9 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 10 C -0.11 -6.28 5.50 84.86 0.47 -5.81 16 11 N -0.98 -61.64 13.70 21.65 0.30 -61.34 16 12 Si 1.13 51.05 29.92 68.60 2.05 53.10 16 13 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 14 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 16 C -0.14 -4.36 5.66 30.67 0.17 -4.19 16 17 C 0.11 2.32 6.33 86.37 0.55 2.86 16 18 N -0.60 -14.02 2.97 -795.04 -2.36 -16.38 16 19 C 0.52 11.92 7.49 87.66 0.66 12.58 16 20 O -0.56 -16.19 11.37 -3.02 -0.03 -16.23 16 21 C -0.11 -1.70 3.75 29.10 0.11 -1.59 16 22 C -0.02 -0.40 4.45 -19.64 -0.09 -0.49 16 23 C -0.14 -1.92 9.78 22.36 0.22 -1.70 16 24 C 0.10 1.40 11.18 84.67 0.95 2.34 16 25 N -0.49 -9.81 10.36 -195.75 -2.03 -11.84 16 26 C 0.10 2.05 10.99 84.72 0.93 2.98 16 27 C -0.09 -1.88 6.26 22.42 0.14 -1.74 16 28 Cl -0.06 -1.44 27.60 -2.72 -0.08 -1.51 16 29 H 0.05 1.56 6.73 -2.39 -0.02 1.54 16 30 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16 31 H 0.07 1.86 6.77 -2.39 -0.02 1.84 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.35 18.84 6.63 -92.71 -0.61 18.23 16 35 H 0.24 15.26 6.77 -92.71 -0.63 14.63 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.56 5.96 -2.39 -0.01 1.54 16 40 H 0.15 1.17 8.01 -2.39 -0.02 1.15 16 41 H 0.12 1.75 6.79 -2.38 -0.02 1.74 16 42 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 44 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -73.95 367.06 2.66 -71.30 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.55 Total: 28.66 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.91 Total: -7.13 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -5.75 Total: -128.18 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.03 Total: -16.23 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.51 kcal Total: -73.95 2.66 -71.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044746876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.311 kcal (2) G-P(sol) polarization free energy of solvation -73.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds