Wall clock time and date at job start Tue Mar 31 2020 20:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.59060 * 2 1 4 4 C 1.53169 * 109.70515 * 239.63146 * 2 1 3 5 5 C 1.53047 * 109.32538 * 185.50011 * 4 2 1 6 6 H 1.08991 * 109.45623 * 181.38607 * 5 4 2 7 7 N 1.46497 * 109.46115 * 301.36324 * 5 4 2 8 8 C 1.36938 * 119.99843 * 205.02647 * 7 5 4 9 9 H 1.08001 * 119.99828 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00021 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00068 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47005 * 90.00140 * 12 10 8 14 14 H 1.48500 * 109.47376 * 330.00061 * 12 10 8 15 15 H 1.48503 * 109.47249 * 210.00237 * 12 10 8 16 16 C 1.53042 * 109.52337 * 61.37789 * 5 4 2 17 17 C 1.53198 * 109.31167 * 298.63924 * 16 5 4 18 18 N 1.46923 * 108.77560 * 54.63664 * 17 16 5 19 19 C 1.34778 * 120.62592 * 126.41360 * 18 17 16 20 20 O 1.21291 * 119.99207 * 174.22574 * 19 18 17 21 21 C 1.50692 * 120.00498 * 354.22519 * 19 18 17 22 22 C 1.50698 * 109.47152 * 179.97438 * 21 19 18 23 23 C 1.38651 * 120.79605 * 264.71585 * 22 21 19 24 24 C 1.38190 * 119.17508 * 179.79954 * 23 22 21 25 25 N 1.31881 * 120.79552 * 0.49004 * 24 23 22 26 26 C 1.31840 * 121.73909 * 359.74182 * 25 24 23 27 27 C 1.38348 * 120.74452 * 0.02562 * 26 25 24 28 28 Cl 1.73608 * 120.43434 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.46634 * 305.47262 * 1 2 3 30 30 H 1.08998 * 109.46598 * 65.47165 * 1 2 3 31 31 H 1.08998 * 109.47367 * 185.46945 * 1 2 3 32 32 H 1.09003 * 109.47391 * 65.55743 * 4 2 1 33 33 H 1.08996 * 109.50371 * 305.46825 * 4 2 1 34 34 H 0.97000 * 120.00289 * 25.02869 * 7 5 4 35 35 H 0.97004 * 119.99776 * 0.02562 * 11 10 8 36 36 H 1.09000 * 109.49658 * 58.58823 * 16 5 4 37 37 H 1.09001 * 109.49476 * 178.65660 * 16 5 4 38 38 H 1.09006 * 109.58562 * 174.42803 * 17 16 5 39 39 H 1.08995 * 109.58277 * 294.70464 * 17 16 5 40 40 H 1.09002 * 109.47025 * 300.00167 * 21 19 18 41 41 H 1.08997 * 109.47167 * 59.99777 * 21 19 18 42 42 H 1.07993 * 120.41002 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.59834 * 180.21278 * 24 23 22 44 44 H 1.07999 * 119.63003 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7290 -1.2441 5 6 3.5707 -0.8445 -1.1673 6 1 3.9427 -1.3411 -2.0633 7 7 4.1574 0.4945 -1.0720 8 6 5.4415 0.7110 -1.4954 9 1 6.0216 -0.1052 -1.8999 10 6 5.9973 1.9798 -1.4056 11 7 5.2898 2.9749 -0.9140 12 14 7.7493 2.2750 -1.9825 13 1 7.7406 2.6513 -3.4191 14 1 8.5460 1.0352 -1.8003 15 1 8.3541 3.3734 -1.1867 16 6 3.9602 -1.6609 0.0671 17 6 3.4653 -0.9425 1.3265 18 7 2.0225 -0.6981 1.1954 19 6 1.1672 -1.1060 2.1537 20 8 -0.0065 -0.8074 2.0860 21 6 1.6688 -1.9330 3.3093 22 6 0.5218 -2.2544 4.2322 23 6 0.2667 -1.4708 5.3472 24 6 -0.7966 -1.7937 6.1687 25 7 -1.5584 -2.8382 5.9079 26 6 -1.3436 -3.6089 4.8600 27 6 -0.3007 -3.3452 3.9900 28 17 -0.0257 -4.3649 2.6122 29 1 -0.3633 0.5964 0.8370 30 1 -0.3632 0.4266 -0.9349 31 1 -0.3634 -1.0230 0.0979 32 1 1.7687 -0.1673 -2.1360 33 1 1.6079 -1.7258 -1.2901 34 1 3.6362 1.2277 -0.7090 35 1 4.3802 2.8215 -0.6141 36 1 3.5036 -2.6489 0.0088 37 1 5.0446 -1.7631 0.1083 38 1 3.6524 -1.5666 2.2005 39 1 3.9904 0.0063 1.4360 40 1 2.1027 -2.8590 2.9320 41 1 2.4276 -1.3722 3.8550 42 1 0.8890 -0.6165 5.5690 43 1 -1.0036 -1.1859 7.0371 44 1 -1.9890 -4.4556 4.6786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044746879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:06 Heat of formation + Delta-G solvation = 18.794065 kcal Electronic energy + Delta-G solvation = -27577.580917 eV Core-core repulsion = 23749.506747 eV Total energy + Delta-G solvation = -3828.074171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.88854 -40.06657 -37.63277 -36.86098 -34.48623 -34.33536 -32.55592 -32.08936 -31.31334 -29.14125 -28.45976 -26.94468 -24.19944 -23.83862 -23.47687 -23.17201 -21.67554 -20.09786 -18.53728 -17.32449 -17.18465 -17.11026 -16.75607 -16.28649 -15.84950 -15.32377 -14.77130 -14.51679 -14.28884 -14.18528 -13.83479 -13.65631 -13.59963 -13.26489 -13.05145 -12.92063 -12.57911 -12.25320 -12.13038 -11.97805 -11.85625 -11.57984 -11.44741 -11.32757 -10.88169 -10.75003 -10.62477 -10.38377 -10.25964 -10.04313 -9.94239 -9.85474 -9.22838 -9.20820 -9.01089 -8.91598 -8.28720 -7.11042 -6.15974 -3.16915 0.66366 0.81509 1.79685 2.68094 3.06270 3.44225 3.47376 3.51409 3.65344 4.12943 4.14635 4.33106 4.56376 4.61412 4.64049 4.92739 5.03736 5.06983 5.18137 5.25648 5.27288 5.30401 5.37374 5.48650 5.55173 5.59924 5.62097 5.75199 5.80284 5.88684 5.97898 6.04870 6.17511 6.20262 6.30084 6.37292 6.47562 6.61695 6.63154 6.70216 6.93898 7.54498 7.60394 7.75494 8.28573 8.68876 9.15209 10.01692 10.16820 11.31738 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020697 B = 0.002914 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.497700 B = 9606.534223 C = 9858.876378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.180 3.820 6 H 0.052 0.948 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.064 0.936 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.081 2.919 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.149 4.149 17 C 0.113 3.887 18 N -0.597 5.597 19 C 0.521 3.479 20 O -0.533 6.533 21 C -0.114 4.114 22 C -0.006 4.006 23 C -0.149 4.149 24 C 0.102 3.898 25 N -0.473 5.473 26 C 0.113 3.887 27 C -0.076 4.076 28 Cl -0.051 7.051 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.366 0.634 35 H 0.254 0.746 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 -13.392 11.351 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.588 5.588 12 Si 0.912 3.088 13 H -0.224 1.224 14 H -0.222 1.222 15 H -0.214 1.214 16 C -0.190 4.190 17 C -0.009 4.009 18 N -0.330 5.330 19 C 0.308 3.692 20 O -0.411 6.411 21 C -0.154 4.154 22 C -0.015 4.015 23 C -0.169 4.169 24 C -0.054 4.054 25 N -0.182 5.182 26 C -0.045 4.045 27 C -0.105 4.105 28 Cl -0.022 7.022 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.201 0.799 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.161 0.839 43 H 0.180 0.820 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.639 -12.515 11.466 19.520 hybrid contribution -0.325 -0.894 -0.513 1.081 sum -9.965 -13.409 10.954 19.977 Atomic orbital electron populations 1.22186 0.93052 1.03140 1.00812 1.21214 0.94934 0.95674 0.83626 0.90782 1.22260 0.97411 1.00381 0.97301 1.20113 0.90227 0.87663 0.95061 0.93039 1.42521 1.14060 1.04732 1.76390 1.20054 0.90431 0.96993 1.38688 0.91749 1.25729 1.06075 0.91561 1.00804 1.70870 1.10865 1.32408 1.44688 0.83216 0.74470 0.75114 0.76003 1.22372 1.22183 1.21449 1.22496 1.01528 0.97963 0.97011 1.21742 0.79166 1.01703 0.98330 1.48145 1.07656 1.57080 1.20092 1.20049 0.86141 0.80108 0.82934 1.90757 1.16988 1.56831 1.76556 1.20863 0.96705 1.02544 0.95304 1.19662 0.94926 0.92360 0.94527 1.22067 0.99692 1.00328 0.94790 1.22831 0.90565 0.93386 0.98648 1.67795 1.27673 1.05100 1.17668 1.22728 0.94054 0.98423 0.89280 1.21963 0.99616 0.96004 0.92869 1.98386 1.95665 1.66499 1.41656 0.90623 0.93977 0.92039 0.90813 0.91950 0.79915 0.93466 0.93147 0.90689 0.91131 0.89903 0.87175 0.87227 0.83871 0.81976 0.81939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 7.62 37.16 0.28 -1.81 16 2 C 0.15 2.40 3.19 -67.61 -0.22 2.18 16 3 H 0.07 1.35 6.64 -51.93 -0.34 1.01 16 4 C -0.13 -2.17 5.08 -26.62 -0.14 -2.31 16 5 C 0.18 3.31 3.10 -67.89 -0.21 3.10 16 6 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 7 N -0.73 -16.81 4.31 -53.39 -0.23 -17.04 16 8 C -0.33 -8.70 9.93 -15.06 -0.15 -8.84 16 9 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 10 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 11 N -0.94 -28.03 13.70 55.49 0.76 -27.27 16 12 Si 1.08 25.04 29.92 -169.99 -5.09 19.96 16 13 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.30 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 C -0.15 -2.35 5.78 -26.61 -0.15 -2.50 16 17 C 0.11 1.66 6.09 -3.71 -0.02 1.63 16 18 N -0.60 -8.90 2.97 -165.23 -0.49 -9.39 16 19 C 0.52 7.41 7.50 -10.99 -0.08 7.33 16 20 O -0.53 -8.85 11.60 5.55 0.06 -8.79 16 21 C -0.11 -1.24 3.78 -29.04 -0.11 -1.35 16 22 C -0.01 -0.06 4.41 -104.28 -0.46 -0.52 16 23 C -0.15 -1.45 9.80 -39.45 -0.39 -1.83 16 24 C 0.10 0.97 11.18 -17.55 -0.20 0.78 16 25 N -0.47 -5.29 10.36 -13.22 -0.14 -5.43 16 26 C 0.11 1.20 10.99 -17.51 -0.19 1.01 16 27 C -0.08 -0.85 6.34 -39.36 -0.25 -1.10 16 28 Cl -0.05 -0.56 27.59 -51.86 -1.43 -1.99 16 29 H 0.07 1.27 6.54 -51.93 -0.34 0.93 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.99 6.95 -51.93 -0.36 0.63 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.37 8.78 4.89 -40.82 -0.20 8.58 16 35 H 0.25 7.45 6.77 -40.82 -0.28 7.17 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 39 H 0.08 1.45 7.74 -51.93 -0.40 1.05 16 40 H 0.11 1.11 7.03 -51.93 -0.36 0.74 16 41 H 0.11 0.97 7.63 -51.93 -0.40 0.58 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -31.47 362.96 -9.46 -40.93 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.00 Total: 9.11 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.38 Total: -5.56 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.10 Total: -59.14 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.06 Total: -8.79 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.09 Total: 19.96 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.43 Total: -1.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.47 -9.46 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044746879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.727 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds