Wall clock time and date at job start Tue Mar 31 2020 20:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.59060 * 2 1 4 4 C 1.53169 * 109.70515 * 239.63146 * 2 1 3 5 5 C 1.53047 * 109.32538 * 185.50011 * 4 2 1 6 6 H 1.08991 * 109.45623 * 181.38607 * 5 4 2 7 7 N 1.46497 * 109.46115 * 301.36324 * 5 4 2 8 8 C 1.36938 * 119.99843 * 205.02647 * 7 5 4 9 9 H 1.08001 * 119.99828 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00021 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00068 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47005 * 90.00140 * 12 10 8 14 14 H 1.48500 * 109.47376 * 330.00061 * 12 10 8 15 15 H 1.48503 * 109.47249 * 210.00237 * 12 10 8 16 16 C 1.53042 * 109.52337 * 61.37789 * 5 4 2 17 17 C 1.53198 * 109.31167 * 298.63924 * 16 5 4 18 18 N 1.46923 * 108.77560 * 54.63664 * 17 16 5 19 19 C 1.34778 * 120.62592 * 126.41360 * 18 17 16 20 20 O 1.21291 * 119.99207 * 174.22574 * 19 18 17 21 21 C 1.50692 * 120.00498 * 354.22519 * 19 18 17 22 22 C 1.50698 * 109.47152 * 179.97438 * 21 19 18 23 23 C 1.38651 * 120.79605 * 264.71585 * 22 21 19 24 24 C 1.38190 * 119.17508 * 179.79954 * 23 22 21 25 25 N 1.31881 * 120.79552 * 0.49004 * 24 23 22 26 26 C 1.31840 * 121.73909 * 359.74182 * 25 24 23 27 27 C 1.38348 * 120.74452 * 0.02562 * 26 25 24 28 28 Cl 1.73608 * 120.43434 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.46634 * 305.47262 * 1 2 3 30 30 H 1.08998 * 109.46598 * 65.47165 * 1 2 3 31 31 H 1.08998 * 109.47367 * 185.46945 * 1 2 3 32 32 H 1.09003 * 109.47391 * 65.55743 * 4 2 1 33 33 H 1.08996 * 109.50371 * 305.46825 * 4 2 1 34 34 H 0.97000 * 120.00289 * 25.02869 * 7 5 4 35 35 H 0.97004 * 119.99776 * 0.02562 * 11 10 8 36 36 H 1.09000 * 109.49658 * 58.58823 * 16 5 4 37 37 H 1.09001 * 109.49476 * 178.65660 * 16 5 4 38 38 H 1.09006 * 109.58562 * 174.42803 * 17 16 5 39 39 H 1.08995 * 109.58277 * 294.70464 * 17 16 5 40 40 H 1.09002 * 109.47025 * 300.00167 * 21 19 18 41 41 H 1.08997 * 109.47167 * 59.99777 * 21 19 18 42 42 H 1.07993 * 120.41002 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.59834 * 180.21278 * 24 23 22 44 44 H 1.07999 * 119.63003 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7290 -1.2441 5 6 3.5707 -0.8445 -1.1673 6 1 3.9427 -1.3411 -2.0633 7 7 4.1574 0.4945 -1.0720 8 6 5.4415 0.7110 -1.4954 9 1 6.0216 -0.1052 -1.8999 10 6 5.9973 1.9798 -1.4056 11 7 5.2898 2.9749 -0.9140 12 14 7.7493 2.2750 -1.9825 13 1 7.7406 2.6513 -3.4191 14 1 8.5460 1.0352 -1.8003 15 1 8.3541 3.3734 -1.1867 16 6 3.9602 -1.6609 0.0671 17 6 3.4653 -0.9425 1.3265 18 7 2.0225 -0.6981 1.1954 19 6 1.1672 -1.1060 2.1537 20 8 -0.0065 -0.8074 2.0860 21 6 1.6688 -1.9330 3.3093 22 6 0.5218 -2.2544 4.2322 23 6 0.2667 -1.4708 5.3472 24 6 -0.7966 -1.7937 6.1687 25 7 -1.5584 -2.8382 5.9079 26 6 -1.3436 -3.6089 4.8600 27 6 -0.3007 -3.3452 3.9900 28 17 -0.0257 -4.3649 2.6122 29 1 -0.3633 0.5964 0.8370 30 1 -0.3632 0.4266 -0.9349 31 1 -0.3634 -1.0230 0.0979 32 1 1.7687 -0.1673 -2.1360 33 1 1.6079 -1.7258 -1.2901 34 1 3.6362 1.2277 -0.7090 35 1 4.3802 2.8215 -0.6141 36 1 3.5036 -2.6489 0.0088 37 1 5.0446 -1.7631 0.1083 38 1 3.6524 -1.5666 2.2005 39 1 3.9904 0.0063 1.4360 40 1 2.1027 -2.8590 2.9320 41 1 2.4276 -1.3722 3.8550 42 1 0.8890 -0.6165 5.5690 43 1 -1.0036 -1.1859 7.0371 44 1 -1.9890 -4.4556 4.6786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044746879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:05 Heat of formation + Delta-G solvation = 0.661462 kcal Electronic energy + Delta-G solvation = -27578.367206 eV Core-core repulsion = 23749.506747 eV Total energy + Delta-G solvation = -3828.860459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.89902 -41.04304 -38.96688 -37.67604 -36.14178 -35.27504 -33.92624 -33.57960 -32.05658 -30.69508 -29.57781 -28.25994 -25.60551 -25.35672 -24.59550 -24.14412 -22.83050 -21.38376 -19.91748 -19.18112 -18.04893 -17.93842 -17.84788 -17.23571 -16.98950 -16.74332 -16.18455 -15.75625 -15.43608 -15.41221 -15.04057 -15.00392 -14.78752 -14.50001 -14.38471 -13.87065 -13.62693 -13.41745 -13.27084 -13.14738 -13.04451 -12.74245 -12.68976 -12.57918 -12.26862 -12.24076 -12.05736 -11.93089 -11.83030 -11.66940 -11.16376 -10.90119 -10.77498 -10.63011 -10.10308 -9.96726 -9.57839 -9.06004 -8.32522 -5.26552 -0.09738 0.03204 0.99150 1.57613 1.60840 1.70145 1.83936 1.93993 2.64153 2.73998 3.32303 3.44282 3.45115 3.51115 3.60849 3.72298 3.88237 3.88946 3.91751 3.99316 4.17342 4.19987 4.27138 4.33620 4.41519 4.47792 4.56420 4.61635 4.66583 4.73617 4.79670 4.82908 4.98097 5.03355 5.05076 5.17450 5.17921 5.26409 5.33583 5.49250 5.65170 5.67777 6.44741 6.54595 6.79629 7.14323 7.14579 8.05284 8.17244 9.18787 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020697 B = 0.002914 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.497700 B = 9606.534223 C = 9858.876378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.150 3.850 3 H 0.046 0.954 4 C -0.123 4.123 5 C 0.172 3.828 6 H 0.043 0.957 7 N -0.742 5.742 8 C -0.319 4.319 9 H 0.067 0.933 10 C -0.105 4.105 11 N -0.978 5.978 12 Si 1.125 2.875 13 H -0.291 1.291 14 H -0.271 1.271 15 H -0.297 1.297 16 C -0.140 4.140 17 C 0.119 3.881 18 N -0.598 5.598 19 C 0.520 3.480 20 O -0.557 6.557 21 C -0.108 4.108 22 C -0.021 4.021 23 C -0.151 4.151 24 C 0.099 3.901 25 N -0.492 5.492 26 C 0.105 3.895 27 C -0.087 4.087 28 Cl -0.054 7.054 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.359 0.641 35 H 0.242 0.758 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.165 0.835 43 H 0.191 0.809 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 -15.029 12.281 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.047 3.953 3 H 0.064 0.936 4 C -0.162 4.162 5 C 0.063 3.937 6 H 0.061 0.939 7 N -0.385 5.385 8 C -0.450 4.450 9 H 0.085 0.915 10 C -0.296 4.296 11 N -0.627 5.627 12 Si 0.952 3.048 13 H -0.218 1.218 14 H -0.197 1.197 15 H -0.224 1.224 16 C -0.181 4.181 17 C -0.003 4.003 18 N -0.331 5.331 19 C 0.309 3.691 20 O -0.437 6.437 21 C -0.148 4.148 22 C -0.030 4.030 23 C -0.170 4.170 24 C -0.057 4.057 25 N -0.201 5.201 26 C -0.053 4.053 27 C -0.116 4.116 28 Cl -0.025 7.025 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.192 0.808 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.141 0.859 41 H 0.152 0.848 42 H 0.182 0.818 43 H 0.208 0.792 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.350 -14.222 12.397 21.057 hybrid contribution -0.514 -0.440 -0.786 1.037 sum -9.863 -14.662 11.611 21.144 Atomic orbital electron populations 1.22009 0.92366 1.02604 1.00655 1.21052 0.95256 0.94507 0.84525 0.93563 1.22130 0.95754 1.01298 0.97000 1.20353 0.91458 0.85802 0.96069 0.93929 1.42667 1.13199 1.06412 1.76268 1.20352 0.91529 0.96686 1.36454 0.91541 1.26986 1.09140 0.91884 1.01591 1.70977 1.10760 1.33461 1.47497 0.82626 0.71081 0.75608 0.75508 1.21839 1.19657 1.22404 1.22347 1.01132 0.98765 0.95837 1.21677 0.78599 1.00627 0.99401 1.48145 1.07868 1.57129 1.19970 1.20593 0.85662 0.79719 0.83163 1.90752 1.18106 1.57711 1.77114 1.20868 0.97222 1.02633 0.94032 1.19820 0.95205 0.92757 0.95175 1.22365 0.99870 1.00560 0.94234 1.23344 0.90036 0.93027 0.99322 1.67842 1.28409 1.05857 1.18037 1.23000 0.94210 0.98891 0.89161 1.22081 1.00095 0.96380 0.93035 1.98378 1.95692 1.66601 1.41831 0.91988 0.93174 0.92351 0.91579 0.89950 0.80775 0.94742 0.90377 0.91666 0.87179 0.93176 0.85939 0.84825 0.81782 0.79220 0.80536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 7.62 71.98 0.55 -3.10 16 2 C 0.15 4.82 3.19 44.97 0.14 4.96 16 3 H 0.05 1.75 6.64 -2.39 -0.02 1.74 16 4 C -0.12 -3.87 5.08 30.67 0.16 -3.71 16 5 C 0.17 6.20 3.10 45.02 0.14 6.34 16 6 H 0.04 1.61 8.08 -2.39 -0.02 1.60 16 7 N -0.74 -34.40 4.31 -322.81 -1.39 -35.79 16 8 C -0.32 -16.77 9.93 84.03 0.83 -15.94 16 9 H 0.07 3.42 7.83 -2.91 -0.02 3.40 16 10 C -0.10 -5.84 5.50 84.86 0.47 -5.38 16 11 N -0.98 -59.51 13.70 21.65 0.30 -59.21 16 12 Si 1.13 50.47 29.92 68.60 2.05 52.53 16 13 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 15 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 16 C -0.14 -4.15 5.78 30.67 0.18 -3.97 16 17 C 0.12 3.29 6.09 86.36 0.53 3.81 16 18 N -0.60 -17.03 2.97 -795.06 -2.36 -19.40 16 19 C 0.52 13.85 7.50 87.65 0.66 14.50 16 20 O -0.56 -17.85 11.60 -3.06 -0.04 -17.89 16 21 C -0.11 -2.05 3.78 29.10 0.11 -1.94 16 22 C -0.02 -0.41 4.41 -19.65 -0.09 -0.50 16 23 C -0.15 -2.56 9.80 22.36 0.22 -2.34 16 24 C 0.10 1.67 11.18 84.67 0.95 2.61 16 25 N -0.49 -10.23 10.36 -195.75 -2.03 -12.25 16 26 C 0.10 2.09 10.99 84.72 0.93 3.02 16 27 C -0.09 -1.82 6.34 22.42 0.14 -1.67 16 28 Cl -0.05 -1.09 27.59 -2.72 -0.08 -1.17 16 29 H 0.06 2.08 6.54 -2.39 -0.02 2.06 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.82 6.95 -2.39 -0.02 1.81 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.36 17.76 4.89 -92.71 -0.45 17.31 16 35 H 0.24 14.73 6.77 -92.71 -0.63 14.10 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.11 2.16 5.93 -2.38 -0.01 2.14 16 39 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 40 H 0.12 2.04 7.03 -2.39 -0.02 2.03 16 41 H 0.13 1.89 7.63 -2.39 -0.02 1.87 16 42 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 43 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 44 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -68.62 362.96 3.08 -65.54 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.71 Total: 30.95 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.91 Total: -3.31 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -5.49 Total: -126.65 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.04 Total: -17.89 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 2.05 Total: 52.53 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -68.62 3.08 -65.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044746879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.199 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds