Wall clock time and date at job start Tue Mar 31 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47751 * 2 1 4 4 C 1.35634 * 125.67684 * 265.08124 * 3 2 1 5 5 C 1.35510 * 108.84973 * 180.23996 * 4 3 2 6 6 Cl 1.73604 * 126.07293 * 179.78501 * 5 4 3 7 7 C 1.39886 * 107.85556 * 359.75079 * 5 4 3 8 8 C 1.37635 * 125.67744 * 84.88788 * 3 2 1 9 9 C 1.46668 * 126.22185 * 0.03235 * 8 3 2 10 10 O 1.21700 * 120.00136 * 353.26066 * 9 8 3 11 11 N 1.34777 * 120.00124 * 173.26547 * 9 8 3 12 12 C 1.46765 * 125.33249 * 354.89219 * 11 9 8 13 13 C 1.53983 * 106.67382 * 198.41856 * 12 11 9 14 14 H 1.08994 * 113.34968 * 94.44924 * 13 12 11 15 15 C 1.53676 * 109.29163 * 221.16418 * 13 12 11 16 16 N 1.46661 * 107.97279 * 93.07041 * 15 13 12 17 17 C 1.36936 * 125.34027 * 179.31394 * 16 15 13 18 18 H 1.07999 * 119.99291 * 347.34512 * 17 16 15 19 19 C 1.38812 * 120.00200 * 167.34861 * 17 16 15 20 20 N 1.31620 * 120.00204 * 2.44054 * 19 17 16 21 21 Si 1.86798 * 119.99682 * 182.44321 * 19 17 16 22 22 H 1.48502 * 109.47017 * 94.98613 * 21 19 17 23 23 H 1.48504 * 109.46989 * 214.98407 * 21 19 17 24 24 H 1.48499 * 109.47402 * 334.98840 * 21 19 17 25 25 C 1.46763 * 109.32841 * 359.28715 * 16 15 13 26 26 C 1.53977 * 106.67684 * 18.45254 * 25 16 15 27 27 H 1.09007 * 112.80170 * 94.13847 * 26 25 16 28 28 C 1.46655 * 125.33678 * 174.85568 * 11 9 8 29 29 H 1.09003 * 109.46836 * 305.10167 * 1 2 3 30 30 H 1.08996 * 109.46948 * 65.09644 * 1 2 3 31 31 H 1.09003 * 109.47450 * 185.10601 * 1 2 3 32 32 H 1.09001 * 109.46950 * 239.99479 * 2 1 3 33 33 H 1.09007 * 109.47182 * 120.00226 * 2 1 3 34 34 H 1.07996 * 125.56943 * 359.97438 * 4 3 2 35 35 H 1.07998 * 126.45595 * 180.02562 * 7 5 4 36 36 H 1.08996 * 110.01274 * 79.11222 * 12 11 9 37 37 H 1.09003 * 110.01495 * 317.72087 * 12 11 9 38 38 H 1.09002 * 109.76757 * 212.69613 * 15 13 12 39 39 H 1.08997 * 109.77189 * 333.43724 * 15 13 12 40 40 H 0.96992 * 119.99687 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.01863 * 137.75350 * 25 16 15 42 42 H 1.09000 * 110.01869 * 259.14713 * 25 16 15 43 43 H 1.09001 * 109.76798 * 59.69502 * 28 11 9 44 44 H 1.09001 * 109.77057 * 298.95326 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3713 2.0954 -1.0977 5 6 2.7771 3.3277 -0.7064 6 17 3.3304 4.6007 -1.7491 7 6 2.6703 3.3921 0.6868 8 6 2.1922 2.1711 1.1136 9 6 1.9238 1.7827 2.5022 10 8 1.3922 0.7149 2.7435 11 7 2.2657 2.6084 3.5110 12 6 3.0036 3.8685 3.3635 13 6 3.5646 4.2174 4.7545 14 1 4.5856 3.8685 4.9085 15 6 3.4078 5.7261 5.0013 16 7 2.1381 5.9404 5.7032 17 6 1.6525 7.1547 6.1091 18 1 2.2960 8.0220 6.1055 19 6 0.3334 7.2708 6.5254 20 7 -0.4371 6.2049 6.5757 21 14 -0.3482 8.9399 7.0142 22 1 -1.0330 9.5554 5.8491 23 1 -1.3178 8.7722 8.1264 24 1 0.7642 9.8190 7.4556 25 6 1.4689 4.6493 5.9017 26 6 2.5455 3.5623 5.7280 27 1 2.9950 3.2580 6.6734 28 6 1.9582 2.3890 4.9281 29 1 -0.3633 0.5910 0.8408 30 1 -0.3633 0.4327 -0.9321 31 1 -0.3634 -1.0236 0.0915 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.3385 1.7387 -2.1165 35 1 2.9156 4.2388 1.3108 36 1 2.3318 4.6566 3.0236 37 1 3.8204 3.7416 2.6529 38 1 4.2335 6.0871 5.6146 39 1 3.3967 6.2563 4.0490 40 1 -1.3587 6.2860 6.8669 41 1 1.0461 4.5986 6.9051 42 1 0.6829 4.5182 5.1581 43 1 2.4072 1.4536 5.2622 44 1 0.8781 2.3506 5.0693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049217982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:57 Heat of formation + Delta-G solvation = 30.298502 kcal Electronic energy + Delta-G solvation = -27608.977427 eV Core-core repulsion = 23781.402126 eV Total energy + Delta-G solvation = -3827.575301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.68991 -41.23301 -39.36239 -37.38090 -36.71491 -35.07689 -34.08283 -32.32560 -31.22887 -30.29927 -30.12739 -27.36884 -27.09627 -25.24607 -24.41802 -22.66779 -22.03341 -21.79230 -20.68802 -20.22497 -18.89035 -18.23008 -17.77097 -17.11367 -16.69884 -16.35262 -16.20380 -15.79621 -15.48528 -15.43243 -15.08312 -14.84249 -14.40119 -14.32319 -14.14021 -13.97750 -13.66943 -13.54756 -13.37052 -13.17612 -13.12712 -12.93443 -12.74486 -12.59155 -12.38867 -12.17745 -11.97402 -11.91635 -11.87417 -11.81473 -11.47333 -11.33407 -11.08440 -10.66843 -9.79857 -9.74899 -9.24057 -8.80643 -7.86368 -5.22627 0.29663 1.11778 1.42545 1.46810 1.48098 1.57089 1.60065 2.16424 2.28099 2.50374 3.24464 3.34254 3.46451 3.65087 3.77724 3.89076 3.95695 3.96425 4.08316 4.16694 4.21272 4.30957 4.36683 4.47344 4.51301 4.54403 4.70138 4.70695 4.80912 4.82869 4.90507 4.92843 4.99817 5.10636 5.14888 5.18969 5.39947 5.42336 5.51483 5.63305 5.71291 5.76664 6.06972 6.24406 6.37893 6.96901 7.12159 7.80961 8.44159 9.24447 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.003425 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.257153 B = 8173.871979 C = 9104.924697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.401 5.401 4 C 0.055 3.945 5 C -0.142 4.142 6 Cl -0.046 7.046 7 C -0.140 4.140 8 C -0.056 4.056 9 C 0.595 3.405 10 O -0.576 6.576 11 N -0.598 5.598 12 C 0.109 3.891 13 C -0.093 4.093 14 H 0.133 0.867 15 C 0.138 3.862 16 N -0.623 5.623 17 C -0.241 4.241 18 H 0.083 0.917 19 C -0.062 4.062 20 N -0.949 5.949 21 Si 0.974 3.026 22 H -0.290 1.290 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.196 3.804 26 C -0.111 4.111 27 H 0.115 0.885 28 C 0.131 3.869 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.216 0.784 35 H 0.162 0.838 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.038 0.962 39 H 0.032 0.968 40 H 0.245 0.755 41 H 0.027 0.973 42 H -0.009 1.009 43 H 0.084 0.916 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 -12.330 -16.380 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.022 4.022 3 N -0.074 5.074 4 C -0.083 4.083 5 C -0.174 4.174 6 Cl -0.018 7.018 7 C -0.166 4.166 8 C -0.169 4.169 9 C 0.387 3.613 10 O -0.458 6.458 11 N -0.329 5.329 12 C -0.013 4.013 13 C -0.112 4.112 14 H 0.151 0.849 15 C 0.013 3.987 16 N -0.349 5.349 17 C -0.370 4.370 18 H 0.101 0.899 19 C -0.255 4.255 20 N -0.598 5.598 21 Si 0.803 3.197 22 H -0.217 1.217 23 H -0.223 1.223 24 H -0.189 1.189 25 C 0.070 3.930 26 C -0.131 4.131 27 H 0.133 0.867 28 C 0.008 3.992 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.151 0.849 33 H 0.106 0.894 34 H 0.232 0.768 35 H 0.179 0.821 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.009 0.991 43 H 0.102 0.898 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.127 -13.117 -16.272 22.806 hybrid contribution -1.090 1.315 0.566 1.800 sum 8.037 -11.802 -15.706 21.226 Atomic orbital electron populations 1.22040 0.93914 1.03818 1.01863 1.22255 0.96056 0.77782 1.06066 1.44238 1.46347 1.12531 1.04334 1.22290 1.02170 0.90578 0.93234 1.20039 1.13835 0.92353 0.91210 1.98324 1.88516 1.49587 1.65361 1.21953 1.03170 0.97076 0.94440 1.19706 1.15892 0.93467 0.87851 1.16752 0.78263 0.82909 0.83408 1.90755 1.46194 1.23627 1.85225 1.47891 1.55383 1.22764 1.06840 1.22542 0.95638 0.84603 0.98555 1.22880 1.00371 0.95025 0.92923 0.84881 1.21306 0.88295 0.93744 0.95319 1.44512 1.20852 1.02978 1.66601 1.19420 0.94035 0.87083 1.36499 0.89923 1.25679 0.96576 1.00610 1.02623 1.70169 1.06792 1.28655 1.54146 0.85124 0.78114 0.79582 0.76919 1.21710 1.22285 1.18911 1.20879 0.91125 0.83134 0.97836 1.23071 0.96782 0.94233 0.99040 0.86659 1.21624 0.99648 0.98653 0.79249 0.95030 0.91045 0.88876 0.84931 0.89376 0.76755 0.82080 0.92616 0.87513 0.94357 0.95017 0.94523 0.95445 0.99094 0.89821 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.13 71.98 0.73 -2.12 16 2 C 0.10 1.66 6.09 86.38 0.53 2.18 16 3 N -0.40 -8.71 2.76 -510.88 -1.41 -10.13 16 4 C 0.06 0.99 11.35 83.47 0.95 1.93 16 5 C -0.14 -3.17 6.66 22.04 0.15 -3.02 16 6 Cl -0.05 -0.96 29.30 -2.72 -0.08 -1.04 16 7 C -0.14 -3.66 9.17 22.59 0.21 -3.46 16 8 C -0.06 -1.56 6.83 40.35 0.28 -1.29 16 9 C 0.60 19.62 7.79 86.44 0.67 20.29 16 10 O -0.58 -21.03 14.60 -4.35 -0.06 -21.09 16 11 N -0.60 -19.31 3.31 -822.22 -2.72 -22.03 16 12 C 0.11 3.17 4.24 86.66 0.37 3.54 16 13 C -0.09 -2.73 4.10 -9.40 -0.04 -2.77 16 14 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 15 C 0.14 5.16 6.58 86.58 0.57 5.73 16 16 N -0.62 -30.90 3.38 -697.71 -2.36 -33.26 16 17 C -0.24 -13.28 10.22 84.03 0.86 -12.42 16 18 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 19 C -0.06 -3.49 5.48 84.86 0.47 -3.02 16 20 N -0.95 -57.32 10.42 21.65 0.23 -57.10 16 21 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.20 9.40 4.60 86.66 0.40 9.80 16 26 C -0.11 -3.83 4.10 -9.40 -0.04 -3.87 16 27 H 0.12 3.52 8.14 -2.38 -0.02 3.50 16 28 C 0.13 4.36 6.19 86.58 0.54 4.90 16 29 H 0.03 0.82 7.63 -2.39 -0.02 0.80 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.13 1.11 8.12 -2.39 -0.02 1.10 16 33 H 0.09 1.85 6.78 -2.38 -0.02 1.84 16 34 H 0.22 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.16 4.21 4.64 -2.91 -0.01 4.20 16 36 H 0.06 1.92 6.86 -2.39 -0.02 1.91 16 37 H 0.11 2.51 6.26 -2.39 -0.01 2.49 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.03 1.17 7.63 -2.39 -0.02 1.15 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.03 1.51 7.01 -2.38 -0.02 1.49 16 42 H -0.01 -0.49 7.31 -2.39 -0.02 -0.51 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.05 1.84 7.63 -2.39 -0.02 1.83 16 Total: -1.00 -71.99 361.09 3.26 -68.73 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.02 Total: 11.79 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.62 Total: 16.41 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -6.27 Total: -122.51 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.06 Total: -21.09 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -71.99 3.26 -68.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049217982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.026 kcal (2) G-P(sol) polarization free energy of solvation -71.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds