Wall clock time and date at job start Tue Mar 31 2020 22:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47314 * 2 1 4 4 C 1.35733 * 117.00025 * 180.02562 * 3 2 1 5 5 C 1.41853 * 126.78517 * 179.97438 * 4 3 2 6 6 C 1.36666 * 103.81028 * 179.97438 * 5 4 3 7 7 C 1.47545 * 126.87453 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00358 * 353.14904 * 7 6 5 9 9 N 1.34779 * 119.99383 * 173.15116 * 7 6 5 10 10 C 1.47131 * 121.05907 * 173.55201 * 9 7 6 11 11 C 1.53229 * 108.72963 * 127.72199 * 10 9 7 12 12 O 1.43115 * 109.35026 * 54.19420 * 11 10 9 13 13 C 1.42349 * 113.99630 * 300.22269 * 12 11 10 14 14 C 1.52915 * 114.29517 * 285.04899 * 13 12 11 15 15 N 1.47156 * 87.84835 * 271.71868 * 14 13 12 16 16 C 1.36939 * 135.99787 * 153.32418 * 15 14 13 17 17 H 1.07997 * 120.00567 * 3.34237 * 16 15 14 18 18 C 1.38811 * 119.99684 * 183.34662 * 16 15 14 19 19 N 1.31621 * 120.00243 * 6.81908 * 18 16 15 20 20 Si 1.86804 * 119.99773 * 186.81988 * 18 16 15 21 21 H 1.48497 * 109.47098 * 265.04710 * 20 18 16 22 22 H 1.48496 * 109.47022 * 25.05368 * 20 18 16 23 23 H 1.48502 * 109.46956 * 145.05099 * 20 18 16 24 24 C 1.47180 * 88.00059 * 333.58053 * 15 14 13 25 25 C 1.47357 * 121.06305 * 353.56784 * 9 7 6 26 26 O 1.34656 * 106.24204 * 0.22307 * 6 5 4 27 27 N 1.20879 * 111.63038 * 359.59199 * 26 6 5 28 28 H 1.08998 * 109.47506 * 300.00382 * 1 2 3 29 29 H 1.08999 * 109.46944 * 60.00341 * 1 2 3 30 30 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47506 * 239.99618 * 2 1 3 32 32 H 1.09008 * 109.46845 * 119.99448 * 2 1 3 33 33 H 1.08002 * 128.09149 * 0.02562 * 5 4 3 34 34 H 1.08999 * 109.59690 * 247.49834 * 10 9 7 35 35 H 1.09007 * 109.59514 * 7.95468 * 10 9 7 36 36 H 1.08995 * 109.49081 * 174.16071 * 11 10 9 37 37 H 1.08997 * 109.49276 * 294.21044 * 11 10 9 38 38 H 1.09009 * 113.48976 * 156.97459 * 14 13 12 39 39 H 1.09001 * 113.54743 * 26.47562 * 14 13 12 40 40 H 0.97000 * 119.99903 * 179.97438 * 19 18 16 41 41 H 1.09004 * 113.48841 * 141.16785 * 24 15 14 42 42 H 1.08997 * 113.48938 * 271.67853 * 24 15 14 43 43 H 1.09003 * 109.74291 * 108.59623 * 25 9 7 44 44 H 1.09001 * 109.79239 * 347.89566 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.0453 2.7627 -0.0012 6 6 5.3626 2.3986 -0.0009 7 6 6.5303 3.3005 -0.0019 8 8 6.3726 4.4992 -0.1286 9 7 7.7720 2.7951 0.1377 10 6 8.9601 3.6519 0.0000 11 6 9.8467 3.4661 1.2358 12 8 10.1324 2.0745 1.4095 13 6 8.9760 1.2641 1.5893 14 6 8.3340 1.3818 2.9721 15 7 9.2341 0.3073 3.4203 16 6 9.7912 -0.0787 4.6102 17 1 9.5392 0.4458 5.5199 18 6 10.6801 -1.1443 4.6470 19 7 11.0913 -1.6973 3.5256 20 14 11.2927 -1.7933 6.2880 21 1 12.5928 -1.1561 6.6182 22 1 10.3020 -1.4746 7.3473 23 1 11.4703 -3.2652 6.2031 24 6 9.2780 -0.1665 2.0276 25 6 7.9829 1.3669 0.4327 26 8 5.3812 1.0522 -0.0053 27 7 4.2639 0.5911 0.0000 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.6293 3.7594 -0.0009 34 1 9.5147 3.3669 -0.8940 35 1 8.6520 4.6949 -0.0753 36 1 10.7787 4.0147 1.1006 37 1 9.3270 3.8436 2.1164 38 1 7.2808 1.1010 2.9876 39 1 8.5226 2.3382 3.4598 40 1 11.7127 -2.4417 3.5514 41 1 10.2633 -0.5153 1.7182 42 1 8.4842 -0.8724 1.7836 43 1 8.3880 0.8653 -0.4462 44 1 7.0373 0.9052 0.7170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053342973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:24 Heat of formation + Delta-G solvation = 16.060607 kcal Electronic energy + Delta-G solvation = -30095.159974 eV Core-core repulsion = 25826.258107 eV Total energy + Delta-G solvation = -4268.901867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.18554 -41.84855 -40.34990 -40.09602 -37.81792 -36.08318 -34.63045 -34.29376 -33.25981 -32.18621 -31.49845 -29.62999 -27.85698 -26.72553 -25.89593 -24.80152 -24.44655 -24.12103 -22.90505 -21.57905 -20.50985 -19.55353 -19.18144 -18.75023 -18.17489 -17.88783 -17.26413 -17.10174 -16.92148 -16.82837 -16.39608 -15.94317 -15.85719 -15.55082 -15.29690 -15.07576 -14.98538 -14.75772 -14.13276 -14.09948 -14.05291 -13.55640 -13.39073 -13.08261 -12.93965 -12.83784 -12.75020 -12.53309 -12.39706 -12.14897 -12.12616 -11.95180 -11.77494 -11.60524 -11.23670 -11.06670 -10.96003 -10.76385 -10.46541 -9.70763 -8.91937 -7.89143 -5.23677 -0.45493 0.92431 1.26622 1.44730 1.46285 1.48056 1.57139 1.70211 1.97807 2.46474 2.67855 2.89364 3.24278 3.30046 3.35957 3.52119 3.60065 3.76739 3.89334 3.92446 3.92607 4.07366 4.18378 4.24158 4.27380 4.45281 4.50976 4.56363 4.64554 4.67743 4.73323 4.79111 4.83391 4.85854 4.92397 5.14512 5.15247 5.15823 5.24577 5.49134 5.84858 5.90761 5.93784 6.38723 6.57224 6.89682 6.91104 7.58977 8.56823 9.26786 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011423 B = 0.003391 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.538512 B = 8254.901647 C =10171.497783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.287 6.287 4 C 0.205 3.795 5 C -0.143 4.143 6 C -0.065 4.065 7 C 0.613 3.387 8 O -0.532 6.532 9 N -0.594 5.594 10 C 0.084 3.916 11 C 0.041 3.959 12 O -0.360 6.360 13 C 0.076 3.924 14 C 0.100 3.900 15 N -0.631 5.631 16 C -0.232 4.232 17 H 0.080 0.920 18 C -0.061 4.061 19 N -0.945 5.945 20 Si 0.979 3.021 21 H -0.286 1.286 22 H -0.270 1.270 23 H -0.291 1.291 24 C 0.162 3.838 25 C 0.100 3.900 26 O 0.114 5.886 27 N -0.402 5.402 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.210 0.790 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.250 0.750 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.106 0.894 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 8.572 -11.812 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.194 6.194 4 C 0.007 3.993 5 C -0.166 4.166 6 C -0.130 4.130 7 C 0.399 3.601 8 O -0.409 6.409 9 N -0.326 5.326 10 C -0.037 4.037 11 C -0.035 4.035 12 O -0.278 6.278 13 C 0.034 3.966 14 C -0.026 4.026 15 N -0.357 5.357 16 C -0.360 4.360 17 H 0.098 0.902 18 C -0.255 4.255 19 N -0.593 5.593 20 Si 0.807 3.193 21 H -0.213 1.213 22 H -0.195 1.195 23 H -0.217 1.217 24 C 0.036 3.964 25 C -0.024 4.024 26 O 0.050 5.950 27 N -0.128 5.128 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.227 0.773 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.124 0.876 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.206 7.834 -11.638 21.435 hybrid contribution 0.116 -0.091 1.055 1.065 sum -16.090 7.742 -10.583 20.757 Atomic orbital electron populations 1.21820 0.89903 1.04640 1.03863 1.23116 0.97647 0.79343 1.02499 1.86229 1.12172 1.31909 1.89072 1.21991 0.86389 0.90448 1.00431 1.22432 0.89463 0.99936 1.04735 1.23899 0.96549 0.84365 1.08212 1.16500 0.80793 0.85631 0.77147 1.90843 1.84569 1.13716 1.51810 1.48134 1.05558 1.10730 1.68182 1.22543 0.84633 0.96909 0.99660 1.23183 1.01535 0.82329 0.96502 1.88012 1.29072 1.18355 1.92377 1.22790 0.86818 0.94419 0.92582 1.23037 0.94220 0.92266 0.93101 1.45579 1.52700 1.32307 1.05072 1.19210 1.19642 1.12230 0.84928 0.90205 1.25595 0.99851 0.99486 1.00568 1.70006 1.36305 1.26558 1.26412 0.85071 0.78094 0.77106 0.79076 1.21337 1.19495 1.21706 1.22012 1.00183 0.90800 0.83366 1.22520 1.00584 0.80473 0.98776 1.85094 1.22446 1.18744 1.68705 1.74009 0.90956 1.22938 1.24942 0.91267 0.90926 0.87947 0.91318 0.91857 0.77327 0.87861 0.86630 0.85066 0.93539 0.93023 0.94121 0.94120 0.92725 0.93306 0.87589 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.81 6.38 71.98 0.46 1.27 16 3 O -0.29 -6.15 10.21 -90.57 -0.92 -7.07 16 4 C 0.20 4.88 8.00 85.78 0.69 5.57 16 5 C -0.14 -3.13 10.98 22.80 0.25 -2.88 16 6 C -0.06 -1.57 6.89 24.36 0.17 -1.40 16 7 C 0.61 15.73 7.70 86.70 0.67 16.40 16 8 O -0.53 -15.22 16.39 -3.94 -0.06 -15.29 16 9 N -0.59 -14.83 3.03 -821.72 -2.49 -17.31 16 10 C 0.08 1.80 6.61 86.34 0.57 2.37 16 11 C 0.04 1.08 6.90 72.06 0.50 1.58 16 12 O -0.36 -13.40 10.53 -148.98 -1.57 -14.96 16 13 C 0.08 2.79 1.27 -11.01 -0.01 2.78 16 14 C 0.10 4.10 7.91 83.31 0.66 4.76 16 15 N -0.63 -32.98 3.78 -740.02 -2.80 -35.78 16 16 C -0.23 -13.33 10.73 84.03 0.90 -12.42 16 17 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 18 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 19 N -0.94 -57.10 11.45 21.65 0.25 -56.85 16 20 Si 0.98 46.10 29.56 68.60 2.03 48.13 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 C 0.16 7.59 6.96 83.22 0.58 8.17 16 25 C 0.10 2.75 5.44 86.15 0.47 3.22 16 26 O 0.11 2.94 7.99 65.69 0.52 3.46 16 27 N -0.40 -10.57 11.50 -172.02 -1.98 -12.55 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.21 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.12 2.25 7.05 -2.38 -0.02 2.24 16 36 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.05 1.30 7.30 -2.39 -0.02 1.28 16 38 H 0.05 2.00 7.93 -2.38 -0.02 1.98 16 39 H 0.04 1.67 7.36 -2.39 -0.02 1.65 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.05 2.95 6.91 -2.38 -0.02 2.93 16 42 H 0.05 2.18 8.09 -2.39 -0.02 2.16 16 43 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.11 2.99 4.38 -2.46 -0.01 2.98 16 Total: -1.00 -72.31 365.66 1.11 -71.20 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.03 Total: 11.48 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 7.10 Total: 25.54 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -7.02 Total: -122.49 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -2.03 Total: -33.86 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.31 1.11 -71.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053342973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.260 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds