Wall clock time and date at job start Tue Mar 31 2020 22:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47256 * 2 1 4 4 C 1.35731 * 117.00023 * 179.97438 * 3 2 1 5 5 C 1.41856 * 126.78531 * 180.02562 * 4 3 2 6 6 C 1.36656 * 103.81157 * 180.02562 * 5 4 3 7 7 C 1.47537 * 126.88080 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99808 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00379 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00210 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.76563 * 31.47094 * 10 9 7 12 12 C 1.55056 * 110.86889 * 267.71161 * 10 9 7 13 13 O 1.44607 * 103.66561 * 205.32238 * 12 10 9 14 14 C 1.42829 * 106.74133 * 39.08024 * 13 12 10 15 15 C 1.52650 * 115.96887 * 202.49452 * 14 13 12 16 16 N 1.47222 * 87.78268 * 218.40479 * 15 14 13 17 17 C 1.36937 * 135.96722 * 206.40899 * 16 15 14 18 18 H 1.07997 * 119.99687 * 350.61132 * 17 16 15 19 19 C 1.38810 * 119.99916 * 170.61092 * 17 16 15 20 20 N 1.31618 * 119.99794 * 157.31820 * 19 17 16 21 21 Si 1.86804 * 120.00020 * 337.31591 * 19 17 16 22 22 H 1.48500 * 109.46862 * 90.00049 * 21 19 17 23 23 H 1.48500 * 109.46777 * 210.00095 * 21 19 17 24 24 H 1.48491 * 109.47169 * 330.00249 * 21 19 17 25 25 C 1.47222 * 88.06543 * 26.66831 * 16 15 14 26 26 C 1.53327 * 108.32685 * 334.32125 * 14 13 12 27 27 O 1.34667 * 106.24087 * 0.22471 * 6 5 4 28 28 N 1.20871 * 111.63242 * 359.59198 * 27 6 5 29 29 H 1.09005 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47201 * 299.99401 * 1 2 3 31 31 H 1.08999 * 109.47215 * 59.99907 * 1 2 3 32 32 H 1.09009 * 109.46959 * 240.00391 * 2 1 3 33 33 H 1.08998 * 109.47156 * 120.00638 * 2 1 3 34 34 H 1.08004 * 128.09292 * 0.02562 * 5 4 3 35 35 H 0.96993 * 119.99614 * 359.97438 * 9 7 6 36 36 H 1.09002 * 110.58661 * 323.86355 * 12 10 9 37 37 H 1.09000 * 110.58374 * 86.77970 * 12 10 9 38 38 H 1.08998 * 113.50312 * 103.67510 * 15 14 13 39 39 H 1.09003 * 113.55063 * 333.14249 * 15 14 13 40 40 H 0.96997 * 120.00266 * 3.59850 * 20 19 17 41 41 H 1.09003 * 113.50436 * 88.05945 * 25 16 15 42 42 H 1.09001 * 113.50110 * 218.60341 * 25 16 15 43 43 H 1.09001 * 110.56489 * 120.18153 * 26 14 13 44 44 H 1.09003 * 110.55841 * 243.02579 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0452 2.7627 0.0012 6 6 5.3624 2.3987 0.0009 7 6 6.5302 3.3004 0.0008 8 8 6.3678 4.5053 0.0005 9 7 7.7770 2.7885 0.0011 10 6 8.9366 3.6839 0.0005 11 1 8.7112 4.6085 0.5319 12 6 9.4090 3.9747 -1.4474 13 8 10.8085 4.3035 -1.2906 14 6 11.3299 3.4195 -0.2972 15 6 12.5926 3.8902 0.4199 16 7 13.0627 2.4955 0.3864 17 6 13.9078 1.7231 1.1377 18 1 14.5229 2.1794 1.8990 19 6 13.9736 0.3536 0.9207 20 7 15.0449 -0.3194 1.2836 21 14 12.5418 -0.5341 0.1136 22 1 12.7314 -0.5424 -1.3593 23 1 12.4809 -1.9313 0.6128 24 1 11.2750 0.1658 0.4455 25 6 12.2317 2.2967 -0.8125 26 6 10.1760 2.9828 0.6131 27 8 5.3811 1.0522 -0.0048 28 7 4.2639 0.5910 0.0001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.6293 3.7594 0.0017 35 1 7.9065 1.8272 0.0018 36 1 9.2910 3.0906 -2.0740 37 1 8.8617 4.8189 -1.8669 38 1 12.4072 4.2623 1.4275 39 1 13.2037 4.5693 -0.1747 40 1 15.7663 0.1316 1.7495 41 1 12.7442 2.5430 -1.7425 42 1 11.7415 1.3236 -0.8451 43 1 10.0557 1.8997 0.5859 44 1 10.3436 3.3248 1.6344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053872550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:56 Heat of formation + Delta-G solvation = 26.977040 kcal Electronic energy + Delta-G solvation = -28878.691543 eV Core-core repulsion = 24610.263049 eV Total energy + Delta-G solvation = -4268.428495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -45.39583 -40.65691 -39.58603 -39.42914 -36.76849 -34.97659 -33.91942 -32.53465 -32.39248 -31.65130 -30.44069 -28.46502 -25.84870 -25.49463 -25.15427 -23.87626 -23.59507 -21.74471 -21.50617 -21.03283 -19.59390 -19.16679 -18.38364 -17.50194 -17.35975 -16.83671 -16.54668 -16.42523 -15.75049 -15.48739 -15.31283 -15.08952 -14.96927 -14.65530 -14.05061 -13.81883 -13.59747 -13.53943 -13.42249 -13.20197 -12.96717 -12.68940 -12.41984 -11.88357 -11.74366 -11.71484 -11.65173 -11.49387 -11.15078 -10.94298 -10.76173 -10.66466 -10.57044 -10.30181 -9.86849 -9.75876 -9.44181 -9.32157 -8.90983 -8.66115 -7.24464 -6.41679 -3.26954 0.33283 1.67261 2.12272 2.14560 2.56695 2.90909 3.33609 3.39095 3.57786 3.63962 4.00545 4.24090 4.35547 4.38515 4.44123 4.53079 4.56787 4.67888 4.71530 4.76242 4.77408 4.85446 5.06035 5.08337 5.10342 5.23178 5.26102 5.41740 5.48390 5.64775 5.66493 5.77096 6.04258 6.07266 6.15552 6.25613 6.29708 6.32143 6.49709 6.49890 6.92507 7.05648 7.23969 7.53521 7.66562 8.19967 8.90554 9.45496 10.32389 11.09619 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002530 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.029780 B =11065.024866 C =12436.539994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.151 4.151 6 C -0.058 4.058 7 C 0.608 3.392 8 O -0.506 6.506 9 N -0.700 5.700 10 C 0.108 3.892 11 H 0.114 0.886 12 C 0.038 3.962 13 O -0.354 6.354 14 C 0.058 3.942 15 C 0.132 3.868 16 N -0.615 5.615 17 C -0.311 4.311 18 H 0.080 0.920 19 C -0.019 4.019 20 N -0.919 5.919 21 Si 1.064 2.936 22 H -0.293 1.293 23 H -0.295 1.295 24 H -0.286 1.286 25 C 0.094 3.906 26 C -0.124 4.124 27 O 0.120 5.880 28 N -0.386 5.386 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.191 0.809 35 H 0.412 0.588 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.264 0.736 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.256 4.124 -3.608 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.174 4.174 6 C -0.125 4.125 7 C 0.391 3.609 8 O -0.381 6.381 9 N -0.352 5.352 10 C 0.004 3.996 11 H 0.132 0.868 12 C -0.040 4.040 13 O -0.270 6.270 14 C 0.017 3.983 15 C 0.006 3.994 16 N -0.346 5.346 17 C -0.437 4.437 18 H 0.098 0.902 19 C -0.219 4.219 20 N -0.560 5.560 21 Si 0.897 3.103 22 H -0.220 1.220 23 H -0.222 1.222 24 H -0.213 1.213 25 C -0.032 4.032 26 C -0.162 4.162 27 O 0.053 5.947 28 N -0.110 5.110 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.208 0.792 35 H 0.248 0.752 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.859 2.414 -4.094 28.262 hybrid contribution 0.318 1.350 0.568 1.498 sum -27.541 3.763 -3.526 28.020 Atomic orbital electron populations 1.21803 0.91984 1.03366 1.03742 1.22879 0.96049 0.80302 1.02628 1.86226 1.12798 1.30521 1.89208 1.21843 0.85989 0.90377 1.00820 1.22186 0.90001 0.99364 1.05846 1.23999 0.96469 0.84453 1.07551 1.16448 0.81010 0.86104 0.77318 1.90903 1.84838 1.12743 1.49624 1.45867 1.04683 1.11317 1.73325 1.22864 0.84392 0.94407 0.97939 0.86804 1.23906 0.83188 1.01545 0.95362 1.88821 1.21804 1.57239 1.59147 1.23624 0.93391 0.92282 0.88978 1.22433 0.89935 0.89478 0.97589 1.45583 1.54586 1.07402 1.26981 1.19924 1.16785 0.89787 1.17213 0.90187 1.25751 1.01799 0.92902 1.01490 1.70918 1.05236 1.39950 1.39896 0.83773 0.75657 0.75198 0.75673 1.22031 1.22245 1.21336 1.23099 0.91491 0.96212 0.92395 1.22735 0.91091 1.02048 1.00322 1.84980 1.22934 1.18443 1.68351 1.74032 0.90386 1.22027 1.24541 0.89812 0.91271 0.91282 0.91396 0.91386 0.79154 0.75176 0.91710 0.88515 0.92993 0.93238 0.92601 0.93137 0.93400 0.89021 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.28 37.15 0.38 -0.30 16 2 C 0.06 0.39 6.38 37.15 0.24 0.63 16 3 O -0.28 -2.64 10.21 -18.90 -0.19 -2.83 16 4 C 0.21 2.13 8.00 -16.72 -0.13 1.99 16 5 C -0.15 -1.43 10.97 -38.77 -0.43 -1.86 16 6 C -0.06 -0.58 7.29 -36.36 -0.26 -0.85 16 7 C 0.61 6.63 7.82 -12.47 -0.10 6.54 16 8 O -0.51 -6.77 16.55 5.29 0.09 -6.68 16 9 N -0.70 -7.17 5.19 -52.76 -0.27 -7.45 16 10 C 0.11 1.29 3.51 -65.77 -0.23 1.06 16 11 H 0.11 1.38 7.54 -51.93 -0.39 0.99 16 12 C 0.04 0.48 7.42 38.24 0.28 0.76 16 13 O -0.35 -5.67 11.32 -35.23 -0.40 -6.07 16 14 C 0.06 1.01 1.66 -90.66 -0.15 0.86 16 15 C 0.13 2.60 8.20 -8.04 -0.07 2.53 16 16 N -0.62 -14.76 3.53 -184.60 -0.65 -15.41 16 17 C -0.31 -8.73 10.96 -15.06 -0.17 -8.90 16 18 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 19 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16 20 N -0.92 -28.34 13.70 55.49 0.76 -27.58 16 21 Si 1.06 25.61 25.33 -169.99 -4.31 21.31 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.07 5.50 56.52 0.31 -5.76 16 25 C 0.09 1.96 6.69 -7.88 -0.05 1.91 16 26 C -0.12 -1.80 6.20 -25.49 -0.16 -1.96 16 27 O 0.12 1.24 11.03 15.49 0.17 1.41 16 28 N -0.39 -4.25 11.50 30.47 0.35 -3.90 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.19 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.41 3.62 8.23 -40.82 -0.34 3.28 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.96 7.91 -51.93 -0.41 0.55 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.00 3.52 -51.93 -0.18 0.82 16 43 H 0.09 1.38 6.42 -51.93 -0.33 1.04 16 44 H 0.09 1.34 7.82 -51.93 -0.41 0.93 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -32.94 368.51 -5.79 -38.74 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.95 Total: 1.14 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.94 Total: 1.78 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.19 Total: -54.34 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.33 Total: -14.17 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.31 Total: 21.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.94 -5.79 -38.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053872550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.713 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds