Wall clock time and date at job start Tue Mar 31 2020 22:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47256 * 2 1 4 4 C 1.35731 * 117.00023 * 179.97438 * 3 2 1 5 5 C 1.41856 * 126.78531 * 180.02562 * 4 3 2 6 6 C 1.36656 * 103.81157 * 180.02562 * 5 4 3 7 7 C 1.47537 * 126.88080 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99808 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00379 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00210 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.76563 * 31.47094 * 10 9 7 12 12 C 1.55056 * 110.86889 * 267.71161 * 10 9 7 13 13 O 1.44607 * 103.66561 * 205.32238 * 12 10 9 14 14 C 1.42829 * 106.74133 * 39.08024 * 13 12 10 15 15 C 1.52650 * 115.96887 * 202.49452 * 14 13 12 16 16 N 1.47222 * 87.78268 * 218.40479 * 15 14 13 17 17 C 1.36937 * 135.96722 * 206.40899 * 16 15 14 18 18 H 1.07997 * 119.99687 * 350.61132 * 17 16 15 19 19 C 1.38810 * 119.99916 * 170.61092 * 17 16 15 20 20 N 1.31618 * 119.99794 * 157.31820 * 19 17 16 21 21 Si 1.86804 * 120.00020 * 337.31591 * 19 17 16 22 22 H 1.48500 * 109.46862 * 90.00049 * 21 19 17 23 23 H 1.48500 * 109.46777 * 210.00095 * 21 19 17 24 24 H 1.48491 * 109.47169 * 330.00249 * 21 19 17 25 25 C 1.47222 * 88.06543 * 26.66831 * 16 15 14 26 26 C 1.53327 * 108.32685 * 334.32125 * 14 13 12 27 27 O 1.34667 * 106.24087 * 0.22471 * 6 5 4 28 28 N 1.20871 * 111.63242 * 359.59198 * 27 6 5 29 29 H 1.09005 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47201 * 299.99401 * 1 2 3 31 31 H 1.08999 * 109.47215 * 59.99907 * 1 2 3 32 32 H 1.09009 * 109.46959 * 240.00391 * 2 1 3 33 33 H 1.08998 * 109.47156 * 120.00638 * 2 1 3 34 34 H 1.08004 * 128.09292 * 0.02562 * 5 4 3 35 35 H 0.96993 * 119.99614 * 359.97438 * 9 7 6 36 36 H 1.09002 * 110.58661 * 323.86355 * 12 10 9 37 37 H 1.09000 * 110.58374 * 86.77970 * 12 10 9 38 38 H 1.08998 * 113.50312 * 103.67510 * 15 14 13 39 39 H 1.09003 * 113.55063 * 333.14249 * 15 14 13 40 40 H 0.96997 * 120.00266 * 3.59850 * 20 19 17 41 41 H 1.09003 * 113.50436 * 88.05945 * 25 16 15 42 42 H 1.09001 * 113.50110 * 218.60341 * 25 16 15 43 43 H 1.09001 * 110.56489 * 120.18153 * 26 14 13 44 44 H 1.09003 * 110.55841 * 243.02579 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0452 2.7627 0.0012 6 6 5.3624 2.3987 0.0009 7 6 6.5302 3.3004 0.0008 8 8 6.3678 4.5053 0.0005 9 7 7.7770 2.7885 0.0011 10 6 8.9366 3.6839 0.0005 11 1 8.7112 4.6085 0.5319 12 6 9.4090 3.9747 -1.4474 13 8 10.8085 4.3035 -1.2906 14 6 11.3299 3.4195 -0.2972 15 6 12.5926 3.8902 0.4199 16 7 13.0627 2.4955 0.3864 17 6 13.9078 1.7231 1.1377 18 1 14.5229 2.1794 1.8990 19 6 13.9736 0.3536 0.9207 20 7 15.0449 -0.3194 1.2836 21 14 12.5418 -0.5341 0.1136 22 1 12.7314 -0.5424 -1.3593 23 1 12.4809 -1.9313 0.6128 24 1 11.2750 0.1658 0.4455 25 6 12.2317 2.2967 -0.8125 26 6 10.1760 2.9828 0.6131 27 8 5.3811 1.0522 -0.0048 28 7 4.2639 0.5910 0.0001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.6293 3.7594 0.0017 35 1 7.9065 1.8272 0.0018 36 1 9.2910 3.0906 -2.0740 37 1 8.8617 4.8189 -1.8669 38 1 12.4072 4.2623 1.4275 39 1 13.2037 4.5693 -0.1747 40 1 15.7663 0.1316 1.7495 41 1 12.7442 2.5430 -1.7425 42 1 11.7415 1.3236 -0.8451 43 1 10.0557 1.8997 0.5859 44 1 10.3436 3.3248 1.6344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053872550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:51 Heat of formation + Delta-G solvation = 0.382029 kcal Electronic energy + Delta-G solvation = -28879.844790 eV Core-core repulsion = 24610.263049 eV Total energy + Delta-G solvation = -4269.581741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -46.16353 -41.85457 -40.65446 -40.10366 -38.19298 -35.98069 -34.62126 -34.50356 -33.33738 -32.18601 -31.52221 -30.08256 -27.33950 -27.11142 -25.92074 -24.59131 -24.26261 -23.39520 -22.51266 -21.84696 -20.77743 -20.38946 -19.46280 -19.15112 -18.06117 -17.82690 -17.58718 -17.14879 -17.02070 -16.77095 -16.52716 -16.05167 -16.00059 -15.61077 -15.42881 -15.18662 -14.77763 -14.67617 -14.33831 -14.13728 -14.09139 -13.55617 -13.40014 -13.21111 -12.97398 -12.82553 -12.69897 -12.45031 -12.39056 -12.33567 -12.14693 -11.94824 -11.62211 -11.49450 -11.30709 -11.07093 -10.77218 -10.48650 -10.45652 -10.23777 -9.25981 -8.67907 -5.45484 -0.43985 0.91713 1.31883 1.40019 1.47169 1.51733 1.70059 1.74456 2.11329 2.56150 2.70355 2.91001 2.96636 3.27661 3.40936 3.46222 3.54175 3.57529 3.72698 3.90189 3.91823 3.99078 4.07159 4.10804 4.26434 4.49042 4.54216 4.62953 4.66872 4.69318 4.75192 4.76955 4.78609 4.80502 4.85125 4.87006 4.94865 5.15076 5.18429 5.22762 5.84610 5.94643 5.96344 6.11612 6.67753 6.73428 6.89670 7.33239 8.27733 8.85741 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002530 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.029780 B =11065.024866 C =12436.539994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.289 6.289 4 C 0.201 3.799 5 C -0.146 4.146 6 C -0.060 4.060 7 C 0.618 3.382 8 O -0.530 6.530 9 N -0.691 5.691 10 C 0.124 3.876 11 H 0.117 0.883 12 C 0.034 3.966 13 O -0.363 6.363 14 C 0.084 3.916 15 C 0.125 3.875 16 N -0.642 5.642 17 C -0.299 4.299 18 H 0.047 0.953 19 C -0.078 4.078 20 N -0.957 5.957 21 Si 1.100 2.900 22 H -0.282 1.282 23 H -0.302 1.302 24 H -0.240 1.240 25 C 0.084 3.916 26 C -0.123 4.123 27 O 0.121 5.879 28 N -0.400 5.400 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.207 0.793 35 H 0.421 0.579 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.248 0.752 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.622 4.587 -4.566 31.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.196 6.196 4 C 0.004 3.996 5 C -0.169 4.169 6 C -0.126 4.126 7 C 0.402 3.598 8 O -0.406 6.406 9 N -0.344 5.344 10 C 0.019 3.981 11 H 0.135 0.865 12 C -0.043 4.043 13 O -0.280 6.280 14 C 0.042 3.958 15 C 0.000 4.000 16 N -0.372 5.372 17 C -0.426 4.426 18 H 0.065 0.935 19 C -0.272 4.272 20 N -0.600 5.600 21 Si 0.925 3.075 22 H -0.209 1.209 23 H -0.230 1.230 24 H -0.165 1.165 25 C -0.041 4.041 26 C -0.161 4.161 27 O 0.054 5.946 28 N -0.124 5.124 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.224 0.776 35 H 0.259 0.741 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -31.262 2.918 -5.062 31.803 hybrid contribution 1.382 1.317 0.847 2.089 sum -29.880 4.235 -4.215 30.471 Atomic orbital electron populations 1.21828 0.90109 1.04636 1.03812 1.23105 0.97530 0.79309 1.02542 1.86237 1.12331 1.31942 1.89058 1.22032 0.86376 0.90553 1.00653 1.22438 0.89781 0.99865 1.04806 1.23816 0.96301 0.84332 1.08137 1.16378 0.81117 0.85727 0.76609 1.90900 1.85172 1.13770 1.50807 1.45730 1.04057 1.11658 1.72929 1.22622 0.83873 0.94351 0.97249 0.86499 1.24156 0.81288 1.02934 0.95970 1.88810 1.23903 1.56652 1.58616 1.23121 0.93259 0.90442 0.88930 1.22584 0.91255 0.87428 0.98764 1.45598 1.54473 1.09126 1.28039 1.19759 1.16194 0.90328 1.16322 0.93528 1.27120 1.03245 0.94233 1.02579 1.71046 1.06216 1.40365 1.42408 0.83423 0.74585 0.74103 0.75376 1.20933 1.23043 1.16484 1.23312 0.91774 0.97952 0.91092 1.22712 0.91036 1.02313 1.00037 1.84964 1.22722 1.18516 1.68443 1.74014 0.90723 1.22514 1.25103 0.87932 0.91213 0.91159 0.91429 0.91521 0.77601 0.74066 0.90417 0.86874 0.91827 0.93209 0.94279 0.93496 0.92845 0.88898 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 71.98 0.74 -0.31 16 2 C 0.05 0.62 6.38 71.98 0.46 1.08 16 3 O -0.29 -5.00 10.21 -90.54 -0.92 -5.92 16 4 C 0.20 3.78 8.00 85.78 0.69 4.47 16 5 C -0.15 -2.45 10.97 22.79 0.25 -2.20 16 6 C -0.06 -1.05 7.29 24.35 0.18 -0.87 16 7 C 0.62 11.65 7.82 86.70 0.68 12.33 16 8 O -0.53 -12.69 16.55 -3.97 -0.07 -12.75 16 9 N -0.69 -11.74 5.19 -439.10 -2.28 -14.01 16 10 C 0.12 2.51 3.51 46.39 0.16 2.67 16 11 H 0.12 2.40 7.54 -2.39 -0.02 2.39 16 12 C 0.03 0.72 7.42 72.69 0.54 1.26 16 13 O -0.36 -10.51 11.32 -148.98 -1.69 -12.20 16 14 C 0.08 2.68 1.66 -10.81 -0.02 2.67 16 15 C 0.13 4.75 8.20 83.40 0.68 5.44 16 16 N -0.64 -30.35 3.53 -739.07 -2.61 -32.95 16 17 C -0.30 -17.06 10.96 84.03 0.92 -16.14 16 18 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 19 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.96 -60.88 13.70 21.65 0.30 -60.58 16 21 Si 1.10 50.61 25.33 68.60 1.74 52.35 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.24 -9.14 5.50 99.48 0.55 -8.59 16 25 C 0.08 3.33 6.69 83.50 0.56 3.88 16 26 C -0.12 -3.15 6.20 31.40 0.19 -2.96 16 27 O 0.12 2.23 11.03 65.60 0.72 2.96 16 28 N -0.40 -8.10 11.50 -172.02 -1.98 -10.08 16 29 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.42 5.82 8.23 -92.71 -0.76 5.05 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 2.25 7.91 -2.39 -0.02 2.23 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.25 15.90 8.73 -92.71 -0.81 15.09 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 2.07 3.52 -2.39 -0.01 2.06 16 43 H 0.09 2.40 6.42 -2.39 -0.02 2.38 16 44 H 0.10 2.49 7.82 -2.39 -0.02 2.47 16 Total: -1.00 -72.23 368.51 -0.20 -72.43 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.09 Total: 13.57 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.50 Total: 7.20 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -6.57 Total: -117.63 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -1.95 Total: -27.92 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 1.74 Total: 52.35 kcal Total: -72.23 -0.20 -72.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053872550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.809 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds