Wall clock time and date at job start Tue Mar 31 2020 22:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47335 * 2 1 4 4 C 1.35726 * 117.00473 * 180.02562 * 3 2 1 5 5 C 1.41858 * 126.78804 * 180.28486 * 4 3 2 6 6 C 1.36662 * 103.80857 * 180.11642 * 5 4 3 7 7 C 1.47546 * 126.87632 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00226 * 359.70753 * 7 6 5 9 9 N 1.34781 * 119.99601 * 179.43675 * 7 6 5 10 10 C 1.46506 * 119.99370 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.97668 * 322.29153 * 10 9 7 12 12 C 1.55005 * 111.10971 * 86.45206 * 10 9 7 13 13 O 1.43869 * 105.17229 * 154.02913 * 12 10 9 14 14 C 1.42529 * 109.62378 * 335.69715 * 13 12 10 15 15 C 1.53269 * 115.54333 * 231.50999 * 14 13 12 16 16 N 1.47707 * 85.91614 * 219.83984 * 15 14 13 17 17 C 1.36939 * 134.43646 * 204.13937 * 16 15 14 18 18 H 1.07995 * 120.00088 * 180.02562 * 17 16 15 19 19 C 1.38810 * 120.00258 * 0.02562 * 17 16 15 20 20 N 1.31618 * 119.99754 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46744 * 60.00161 * 21 19 17 23 23 H 1.48495 * 109.46983 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46771 * 300.00419 * 21 19 17 25 25 C 1.47703 * 91.12723 * 24.15645 * 16 15 14 26 26 C 1.53769 * 108.38461 * 1.85986 * 14 13 12 27 27 O 1.34664 * 106.24526 * 359.66728 * 6 5 4 28 28 N 1.20872 * 111.62730 * 0.22583 * 27 6 5 29 29 H 1.08996 * 109.47502 * 300.00277 * 1 2 3 30 30 H 1.08997 * 109.47029 * 60.00388 * 1 2 3 31 31 H 1.09003 * 109.46738 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47356 * 240.00000 * 2 1 3 33 33 H 1.09003 * 109.47267 * 119.99988 * 2 1 3 34 34 H 1.07993 * 128.09538 * 0.03091 * 5 4 3 35 35 H 0.96990 * 120.00430 * 359.97438 * 9 7 6 36 36 H 1.08998 * 110.30168 * 272.94912 * 12 10 9 37 37 H 1.08998 * 110.30570 * 35.00349 * 12 10 9 38 38 H 1.09001 * 113.80042 * 334.09149 * 15 14 13 39 39 H 1.09003 * 113.80099 * 105.58600 * 15 14 13 40 40 H 0.97005 * 120.00236 * 179.97438 * 20 19 17 41 41 H 1.09004 * 113.80530 * 221.60339 * 25 16 15 42 42 H 1.08994 * 113.91086 * 90.10666 * 25 16 15 43 43 H 1.08996 * 110.92404 * 262.79260 * 26 14 13 44 44 H 1.09001 * 110.92362 * 139.14211 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0452 2.7628 0.0050 6 6 5.3625 2.3988 -0.0010 7 6 6.5303 3.3006 0.0007 8 8 6.3679 4.5055 0.0026 9 7 7.7770 2.7885 0.0056 10 6 8.9365 3.6840 0.0077 11 1 8.7552 4.5587 -0.6169 12 6 9.3190 4.0985 1.4515 13 8 10.7229 4.4080 1.3950 14 6 11.3216 3.7174 0.3013 15 6 12.5735 2.9009 0.6410 16 7 13.1126 3.3904 -0.6441 17 6 14.0601 2.9355 -1.5219 18 1 14.2776 3.4951 -2.4196 19 6 14.7410 1.7550 -1.2580 20 7 14.4756 1.0727 -0.1641 21 14 16.0340 1.1347 -2.4550 22 1 17.1112 2.1480 -2.5888 23 1 16.6096 -0.1364 -1.9470 24 1 15.4084 0.8992 -3.7811 25 6 12.2211 4.5673 -0.6032 26 6 10.2236 2.9342 -0.4373 27 8 5.3812 1.0523 -0.0017 28 7 4.2639 0.5912 -0.0014 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6294 3.7594 0.0110 35 1 7.9065 1.8273 0.0084 36 1 8.7501 4.9770 1.7560 37 1 9.1394 3.2744 2.1418 38 1 13.1146 3.2676 1.5133 39 1 12.4035 1.8245 0.6653 40 1 14.9512 0.2476 0.0202 41 1 11.7714 4.8123 -1.5655 42 1 12.6551 5.4332 -0.1034 43 1 10.2008 1.8944 -0.1112 44 1 10.3584 2.9993 -1.5170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053872551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:05 Heat of formation + Delta-G solvation = 16.862645 kcal Electronic energy + Delta-G solvation = -28538.229792 eV Core-core repulsion = 24269.362704 eV Total energy + Delta-G solvation = -4268.867088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -45.36596 -40.43063 -39.44965 -39.28825 -36.36733 -34.85141 -33.88964 -32.48630 -32.10442 -31.63116 -30.28030 -28.15973 -25.73908 -25.12175 -24.96982 -23.84921 -23.56287 -22.02837 -21.56664 -20.94310 -19.53157 -18.79818 -18.35327 -17.33607 -16.88945 -16.69237 -16.42596 -16.40530 -15.45737 -15.26396 -15.05296 -14.92950 -14.83818 -14.46596 -13.99649 -13.74363 -13.57690 -13.44419 -13.19148 -13.06730 -12.65211 -12.40440 -12.23992 -11.76397 -11.64450 -11.63866 -11.46159 -11.14526 -10.91998 -10.85036 -10.72462 -10.60807 -10.42896 -10.26399 -10.08334 -9.73644 -9.59326 -9.37322 -8.83371 -8.74628 -6.93388 -5.80565 -3.13234 0.37269 1.69911 2.15138 2.18507 2.62615 2.96314 3.38024 3.42316 3.43517 3.66739 4.15308 4.27100 4.39486 4.41421 4.45800 4.47442 4.67649 4.70077 4.78488 4.96379 5.06568 5.09793 5.20964 5.24155 5.26205 5.29039 5.32658 5.49451 5.51792 5.76837 5.83221 6.01254 6.19022 6.24869 6.40876 6.51857 6.56900 6.65082 6.99833 7.00349 7.19322 7.47782 7.58773 7.65944 7.71183 7.93215 9.00742 9.66630 10.54666 11.36716 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.002085 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.524235 B =13429.223372 C =14413.111227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.152 4.152 6 C -0.057 4.057 7 C 0.607 3.393 8 O -0.506 6.506 9 N -0.697 5.697 10 C 0.107 3.893 11 H 0.110 0.890 12 C 0.044 3.956 13 O -0.363 6.363 14 C 0.055 3.945 15 C 0.165 3.835 16 N -0.604 5.604 17 C -0.222 4.222 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.118 3.882 26 C -0.118 4.118 27 O 0.119 5.881 28 N -0.388 5.388 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.191 0.809 35 H 0.412 0.588 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.255 0.745 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.087 0.913 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.716 -0.808 1.585 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.175 4.175 6 C -0.123 4.123 7 C 0.389 3.611 8 O -0.381 6.381 9 N -0.349 5.349 10 C 0.002 3.998 11 H 0.128 0.872 12 C -0.035 4.035 13 O -0.281 6.281 14 C 0.014 3.986 15 C 0.040 3.960 16 N -0.333 5.333 17 C -0.349 4.349 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.008 4.008 26 C -0.156 4.156 27 O 0.053 5.947 28 N -0.111 5.111 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.208 0.792 35 H 0.248 0.752 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.759 -1.147 1.616 25.835 hybrid contribution 0.527 -0.433 -0.651 0.943 sum -25.232 -1.580 0.965 25.300 Atomic orbital electron populations 1.21802 0.92002 1.03344 1.03751 1.22874 0.96035 0.80336 1.02597 1.86224 1.12834 1.30485 1.89216 1.21842 0.85962 0.90403 1.00824 1.22188 0.90029 0.99355 1.05946 1.24031 0.96504 0.84402 1.07351 1.16463 0.81032 0.86105 0.77473 1.90907 1.84811 1.12754 1.49579 1.45781 1.04602 1.11294 1.73224 1.22981 0.84400 0.93983 0.98392 0.87235 1.23670 0.83628 1.00924 0.95258 1.88419 1.19434 1.69619 1.50579 1.24231 0.93107 0.94224 0.87048 1.22517 0.86483 0.98269 0.88752 1.45671 1.44418 1.21893 1.21302 1.18925 1.12170 1.04161 0.99647 0.90115 1.24789 1.00037 0.97736 0.97771 1.69803 1.44343 1.17020 1.25581 0.86183 0.81371 0.78013 0.80083 1.21136 1.21555 1.21058 1.22826 0.90018 0.91960 0.96035 1.22883 0.90487 0.99699 1.02482 1.84972 1.22900 1.18476 1.68379 1.74020 0.90403 1.22053 1.24654 0.91272 0.91280 0.89832 0.91412 0.91414 0.79171 0.75204 0.89603 0.92051 0.94666 0.90477 0.93503 0.93431 0.93894 0.89489 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.28 37.16 0.38 -0.30 16 2 C 0.06 0.39 6.38 37.16 0.24 0.63 16 3 O -0.28 -2.66 10.21 -18.88 -0.19 -2.85 16 4 C 0.21 2.14 8.00 -16.72 -0.13 2.01 16 5 C -0.15 -1.47 10.97 -38.77 -0.43 -1.90 16 6 C -0.06 -0.57 7.29 -36.36 -0.26 -0.84 16 7 C 0.61 6.84 7.82 -12.46 -0.10 6.74 16 8 O -0.51 -7.06 16.66 5.30 0.09 -6.97 16 9 N -0.70 -7.29 5.24 -52.55 -0.28 -7.57 16 10 C 0.11 1.35 3.37 -65.56 -0.22 1.13 16 11 H 0.11 1.44 7.74 -51.93 -0.40 1.04 16 12 C 0.04 0.60 7.49 38.22 0.29 0.89 16 13 O -0.36 -6.43 11.14 -35.23 -0.39 -6.82 16 14 C 0.05 1.02 1.68 -90.05 -0.15 0.87 16 15 C 0.17 3.86 7.01 -3.25 -0.02 3.84 16 16 N -0.60 -15.17 3.67 -181.29 -0.67 -15.83 16 17 C -0.22 -6.07 10.70 -15.06 -0.16 -6.23 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -26.65 11.39 55.49 0.63 -26.02 16 21 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.12 2.42 8.37 -3.24 -0.03 2.40 16 26 C -0.12 -1.78 5.96 -25.02 -0.15 -1.93 16 27 O 0.12 1.23 11.03 15.49 0.17 1.40 16 28 N -0.39 -4.25 11.50 30.47 0.35 -3.90 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.41 3.54 8.33 -40.82 -0.34 3.20 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.92 7.05 -51.93 -0.37 1.56 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.05 0.90 7.98 -51.93 -0.41 0.48 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.27 7.85 -51.93 -0.41 0.86 16 44 H 0.09 1.47 7.83 -51.93 -0.41 1.06 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -32.16 376.78 -6.58 -38.74 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.11 Total: 0.42 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.84 Total: 7.02 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.04 Total: -53.32 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.33 Total: -15.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.16 -6.58 -38.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053872551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.605 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds