Wall clock time and date at job start Tue Mar 31 2020 22:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47335 * 2 1 4 4 C 1.35726 * 117.00473 * 180.02562 * 3 2 1 5 5 C 1.41858 * 126.78804 * 180.28486 * 4 3 2 6 6 C 1.36662 * 103.80857 * 180.11642 * 5 4 3 7 7 C 1.47546 * 126.87632 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00226 * 359.70753 * 7 6 5 9 9 N 1.34781 * 119.99601 * 179.43675 * 7 6 5 10 10 C 1.46506 * 119.99370 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.97668 * 322.29153 * 10 9 7 12 12 C 1.55005 * 111.10971 * 86.45206 * 10 9 7 13 13 O 1.43869 * 105.17229 * 154.02913 * 12 10 9 14 14 C 1.42529 * 109.62378 * 335.69715 * 13 12 10 15 15 C 1.53269 * 115.54333 * 231.50999 * 14 13 12 16 16 N 1.47707 * 85.91614 * 219.83984 * 15 14 13 17 17 C 1.36939 * 134.43646 * 204.13937 * 16 15 14 18 18 H 1.07995 * 120.00088 * 180.02562 * 17 16 15 19 19 C 1.38810 * 120.00258 * 0.02562 * 17 16 15 20 20 N 1.31618 * 119.99754 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46744 * 60.00161 * 21 19 17 23 23 H 1.48495 * 109.46983 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46771 * 300.00419 * 21 19 17 25 25 C 1.47703 * 91.12723 * 24.15645 * 16 15 14 26 26 C 1.53769 * 108.38461 * 1.85986 * 14 13 12 27 27 O 1.34664 * 106.24526 * 359.66728 * 6 5 4 28 28 N 1.20872 * 111.62730 * 0.22583 * 27 6 5 29 29 H 1.08996 * 109.47502 * 300.00277 * 1 2 3 30 30 H 1.08997 * 109.47029 * 60.00388 * 1 2 3 31 31 H 1.09003 * 109.46738 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47356 * 240.00000 * 2 1 3 33 33 H 1.09003 * 109.47267 * 119.99988 * 2 1 3 34 34 H 1.07993 * 128.09538 * 0.03091 * 5 4 3 35 35 H 0.96990 * 120.00430 * 359.97438 * 9 7 6 36 36 H 1.08998 * 110.30168 * 272.94912 * 12 10 9 37 37 H 1.08998 * 110.30570 * 35.00349 * 12 10 9 38 38 H 1.09001 * 113.80042 * 334.09149 * 15 14 13 39 39 H 1.09003 * 113.80099 * 105.58600 * 15 14 13 40 40 H 0.97005 * 120.00236 * 179.97438 * 20 19 17 41 41 H 1.09004 * 113.80530 * 221.60339 * 25 16 15 42 42 H 1.08994 * 113.91086 * 90.10666 * 25 16 15 43 43 H 1.08996 * 110.92404 * 262.79260 * 26 14 13 44 44 H 1.09001 * 110.92362 * 139.14211 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0452 2.7628 0.0050 6 6 5.3625 2.3988 -0.0010 7 6 6.5303 3.3006 0.0007 8 8 6.3679 4.5055 0.0026 9 7 7.7770 2.7885 0.0056 10 6 8.9365 3.6840 0.0077 11 1 8.7552 4.5587 -0.6169 12 6 9.3190 4.0985 1.4515 13 8 10.7229 4.4080 1.3950 14 6 11.3216 3.7174 0.3013 15 6 12.5735 2.9009 0.6410 16 7 13.1126 3.3904 -0.6441 17 6 14.0601 2.9355 -1.5219 18 1 14.2776 3.4951 -2.4196 19 6 14.7410 1.7550 -1.2580 20 7 14.4756 1.0727 -0.1641 21 14 16.0340 1.1347 -2.4550 22 1 17.1112 2.1480 -2.5888 23 1 16.6096 -0.1364 -1.9470 24 1 15.4084 0.8992 -3.7811 25 6 12.2211 4.5673 -0.6032 26 6 10.2236 2.9342 -0.4373 27 8 5.3812 1.0523 -0.0017 28 7 4.2639 0.5912 -0.0014 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6294 3.7594 0.0110 35 1 7.9065 1.8273 0.0084 36 1 8.7501 4.9770 1.7560 37 1 9.1394 3.2744 2.1418 38 1 13.1146 3.2676 1.5133 39 1 12.4035 1.8245 0.6653 40 1 14.9512 0.2476 0.0202 41 1 11.7714 4.8123 -1.5655 42 1 12.6551 5.4332 -0.1034 43 1 10.2008 1.8944 -0.1112 44 1 10.3584 2.9993 -1.5170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053872551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:03 Heat of formation + Delta-G solvation = -7.536218 kcal Electronic energy + Delta-G solvation = -28539.287806 eV Core-core repulsion = 24269.362704 eV Total energy + Delta-G solvation = -4269.925102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -46.15974 -41.64976 -40.52627 -40.10191 -37.91618 -35.95019 -34.61895 -34.11156 -33.32645 -32.18110 -31.44179 -29.85300 -27.33461 -26.73543 -25.92681 -24.58786 -24.26771 -23.81177 -22.51366 -21.83355 -20.52565 -20.23815 -19.14743 -18.74878 -18.05904 -17.84031 -17.41849 -17.02594 -16.89129 -16.66329 -16.42755 -15.99568 -15.86771 -15.56079 -15.45255 -14.80446 -14.67192 -14.54320 -14.15281 -14.08971 -13.85955 -13.55326 -13.36884 -12.99233 -12.83130 -12.81587 -12.59489 -12.52448 -12.43061 -12.33219 -12.14463 -11.95760 -11.77653 -11.61855 -11.53582 -11.06853 -10.84854 -10.47986 -10.42175 -10.20015 -8.94646 -7.89688 -5.23909 -0.43779 0.91769 1.31529 1.47232 1.48520 1.51604 1.57617 1.75036 2.11378 2.46203 2.88107 2.93429 3.25148 3.37129 3.48995 3.55668 3.66953 3.70213 3.79312 3.90315 3.92063 4.01245 4.07517 4.12204 4.26580 4.54591 4.68203 4.71542 4.77313 4.78758 4.84162 4.85415 4.87343 4.93691 5.03050 5.12275 5.15429 5.23920 5.30557 5.51261 5.84817 5.90068 6.13087 6.20370 6.74824 6.89597 6.91774 7.60321 8.54745 9.27295 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.002085 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.524235 B =13429.223372 C =14413.111227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.289 6.289 4 C 0.201 3.799 5 C -0.147 4.147 6 C -0.058 4.058 7 C 0.616 3.384 8 O -0.531 6.531 9 N -0.687 5.687 10 C 0.126 3.874 11 H 0.112 0.888 12 C 0.039 3.961 13 O -0.378 6.378 14 C 0.079 3.921 15 C 0.159 3.841 16 N -0.628 5.628 17 C -0.233 4.233 18 H 0.087 0.913 19 C -0.064 4.064 20 N -0.952 5.952 21 Si 0.980 3.020 22 H -0.280 1.280 23 H -0.295 1.295 24 H -0.273 1.273 25 C 0.116 3.884 26 C -0.111 4.111 27 O 0.121 5.879 28 N -0.400 5.400 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.207 0.793 35 H 0.423 0.577 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.009 0.991 39 H 0.055 0.945 40 H 0.250 0.750 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.520 -0.691 0.733 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.196 6.196 4 C 0.004 3.996 5 C -0.169 4.169 6 C -0.124 4.124 7 C 0.400 3.600 8 O -0.407 6.407 9 N -0.340 5.340 10 C 0.021 3.979 11 H 0.130 0.870 12 C -0.039 4.039 13 O -0.296 6.296 14 C 0.038 3.962 15 C 0.034 3.966 16 N -0.357 5.357 17 C -0.361 4.361 18 H 0.105 0.895 19 C -0.257 4.257 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.198 1.198 25 C -0.010 4.010 26 C -0.149 4.149 27 O 0.054 5.946 28 N -0.124 5.124 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.224 0.776 35 H 0.261 0.739 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.110 0.890 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.597 -1.022 0.759 27.626 hybrid contribution 1.020 -0.439 -0.324 1.157 sum -26.577 -1.462 0.434 26.621 Atomic orbital electron populations 1.21828 0.90092 1.04647 1.03812 1.23111 0.97541 0.79298 1.02549 1.86236 1.12300 1.31970 1.89051 1.22016 0.86384 0.90523 1.00632 1.22436 0.89776 0.99893 1.04836 1.23786 0.96232 0.84323 1.08090 1.16417 0.81149 0.85762 0.76696 1.90902 1.85178 1.13847 1.50812 1.45615 1.03865 1.11644 1.72848 1.22664 0.83963 0.93809 0.97454 0.86986 1.23902 0.81556 1.02133 0.96272 1.88394 1.21743 1.69337 1.50115 1.23710 0.92679 0.92879 0.86946 1.22419 0.89088 0.97585 0.87547 1.45970 1.44557 1.23727 1.21422 1.19337 1.12376 1.04214 1.00214 0.89513 1.25619 1.02310 0.98194 0.99563 1.69993 1.45436 1.17221 1.27380 0.85138 0.78817 0.76956 0.78318 1.20663 1.22150 1.19838 1.22964 0.89554 0.90863 0.97581 1.22775 0.90416 0.99737 1.01942 1.84962 1.22720 1.18465 1.68465 1.74004 0.90708 1.22496 1.25143 0.91176 0.91211 0.87896 0.91481 0.91443 0.77632 0.73922 0.88264 0.90818 0.97311 0.92643 0.94151 0.91191 0.94116 0.88985 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 71.98 0.74 -0.33 16 2 C 0.05 0.63 6.38 71.98 0.46 1.08 16 3 O -0.29 -5.11 10.21 -90.48 -0.92 -6.03 16 4 C 0.20 3.90 8.00 85.78 0.69 4.59 16 5 C -0.15 -2.58 10.97 22.80 0.25 -2.33 16 6 C -0.06 -1.08 7.29 24.36 0.18 -0.90 16 7 C 0.62 12.58 7.82 86.70 0.68 13.26 16 8 O -0.53 -13.69 16.66 -3.97 -0.07 -13.76 16 9 N -0.69 -12.82 5.24 -438.44 -2.30 -15.12 16 10 C 0.13 2.92 3.37 46.52 0.16 3.07 16 11 H 0.11 2.65 7.74 -2.39 -0.02 2.63 16 12 C 0.04 0.99 7.49 72.67 0.54 1.54 16 13 O -0.38 -12.98 11.14 -148.98 -1.66 -14.64 16 14 C 0.08 2.90 1.68 -10.31 -0.02 2.89 16 15 C 0.16 7.65 7.01 86.23 0.60 8.26 16 16 N -0.63 -31.83 3.67 -732.78 -2.69 -34.52 16 17 C -0.23 -12.84 10.70 84.03 0.90 -11.94 16 18 H 0.09 4.53 7.83 -2.91 -0.02 4.50 16 19 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 20 N -0.95 -56.39 11.39 21.65 0.25 -56.14 16 21 Si 0.98 44.85 29.55 68.60 2.03 46.88 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.12 4.68 8.37 86.24 0.72 5.40 16 26 C -0.11 -3.18 5.96 31.70 0.19 -3.00 16 27 O 0.12 2.31 11.03 65.63 0.72 3.03 16 28 N -0.40 -8.27 11.50 -172.01 -1.98 -10.25 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.42 6.30 8.33 -92.72 -0.77 5.53 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.06 2.87 7.05 -2.39 -0.02 2.85 16 40 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 41 H 0.07 2.52 7.98 -2.39 -0.02 2.50 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.09 2.58 7.85 -2.39 -0.02 2.56 16 44 H 0.09 2.77 7.83 -2.39 -0.02 2.75 16 Total: -1.00 -69.29 376.78 0.20 -69.09 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.26 Total: 12.96 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 6.56 Total: 18.50 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -6.72 Total: -116.03 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.93 Total: -31.40 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -69.29 0.20 -69.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053872551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.553 kcal (2) G-P(sol) polarization free energy of solvation -69.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds