Wall clock time and date at job start Tue Mar 31 2020 20:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58441 * 2 1 4 4 C 1.53188 * 109.58750 * 120.28521 * 2 1 3 5 5 C 1.53045 * 109.31256 * 174.42682 * 4 2 1 6 6 C 1.53040 * 109.52492 * 298.63782 * 5 4 2 7 7 H 1.09003 * 109.49508 * 301.41272 * 6 5 4 8 8 N 1.46499 * 109.49887 * 181.31340 * 6 5 4 9 9 C 1.34773 * 119.99941 * 155.00096 * 8 6 5 10 10 O 1.21278 * 120.00236 * 359.97438 * 9 8 6 11 11 C 1.50696 * 119.99746 * 179.97438 * 9 8 6 12 12 C 1.50706 * 109.47277 * 179.97438 * 11 9 8 13 13 C 1.38650 * 120.79323 * 99.99896 * 12 11 9 14 14 C 1.38182 * 119.17828 * 179.97438 * 13 12 11 15 15 N 1.31886 * 120.79503 * 0.02562 * 14 13 12 16 16 C 1.31843 * 121.73964 * 359.97438 * 15 14 13 17 17 C 1.38359 * 120.74039 * 359.74225 * 16 15 14 18 18 Cl 1.73600 * 120.43109 * 180.28320 * 17 16 15 19 19 C 1.53164 * 109.32819 * 61.37012 * 6 5 4 20 20 N 1.46926 * 108.77118 * 305.35982 * 19 6 5 21 21 C 1.36938 * 120.62847 * 233.62869 * 20 19 6 22 22 H 1.08001 * 119.99545 * 150.84980 * 21 20 19 23 23 C 1.38804 * 120.00214 * 330.84834 * 21 20 19 24 24 N 1.31621 * 120.00284 * 160.75933 * 23 21 20 25 25 Si 1.86799 * 119.99869 * 340.76198 * 23 21 20 26 26 H 1.48502 * 109.47406 * 92.26297 * 25 23 21 27 27 H 1.48504 * 109.47139 * 212.26438 * 25 23 21 28 28 H 1.48494 * 109.47265 * 332.26166 * 25 23 21 29 29 H 1.08997 * 109.47241 * 299.71677 * 1 2 3 30 30 H 1.09000 * 109.47492 * 59.71878 * 1 2 3 31 31 H 1.09010 * 109.47223 * 179.71553 * 1 2 3 32 32 H 1.08998 * 109.50271 * 54.46838 * 4 2 1 33 33 H 1.09003 * 109.52042 * 294.38695 * 4 2 1 34 34 H 1.08994 * 109.46356 * 58.65135 * 5 4 2 35 35 H 1.09000 * 109.45549 * 178.62760 * 5 4 2 36 36 H 0.96997 * 119.99853 * 334.99610 * 8 6 5 37 37 H 1.08997 * 109.47638 * 300.00012 * 11 9 8 38 38 H 1.09006 * 109.47044 * 60.00247 * 11 9 8 39 39 H 1.07998 * 120.41023 * 359.96049 * 13 12 11 40 40 H 1.08003 * 119.60908 * 179.97438 * 14 13 12 41 41 H 1.07994 * 119.63310 * 180.02562 * 16 15 14 42 42 H 1.08995 * 109.59157 * 185.57304 * 19 6 5 43 43 H 1.08998 * 109.70490 * 65.21128 * 19 6 5 44 44 H 0.97003 * 120.00231 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5675 -0.8464 1.1712 6 6 3.9567 -1.6656 -0.0616 7 1 3.4980 -2.6526 -0.0021 8 7 5.4140 -1.8053 -0.1158 9 6 5.9672 -2.8488 -0.7648 10 8 5.2587 -3.6725 -1.3037 11 6 7.4663 -2.9922 -0.8210 12 6 7.8236 -4.2326 -1.5988 13 6 8.2156 -4.1499 -2.9261 14 6 8.5362 -5.3085 -3.6074 15 7 8.4724 -6.4826 -3.0101 16 6 8.1040 -6.6005 -1.7497 17 6 7.7737 -5.4841 -1.0021 18 17 7.2968 -5.6479 0.6591 19 6 3.4650 -0.9486 -1.3226 20 7 2.0225 -0.7010 -1.1936 21 6 1.1536 -1.1162 -2.1672 22 1 0.1366 -1.3724 -1.9097 23 6 1.5801 -1.2078 -3.4850 24 7 0.9074 -1.9430 -4.3448 25 14 3.1087 -0.2876 -4.0380 26 1 4.2943 -1.1718 -3.9041 27 1 2.9540 0.1213 -5.4572 28 1 3.2931 0.9191 -3.1926 29 1 -0.3633 0.5094 0.8925 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3634 -1.0277 -0.0051 32 1 1.6030 -1.7237 1.2935 33 1 1.7660 -0.1646 2.1373 34 1 4.0061 0.1488 1.0991 35 1 3.9378 -1.3424 2.0684 36 1 5.9807 -1.1467 0.3155 37 1 7.8968 -2.1190 -1.3113 38 1 7.8619 -3.0722 0.1916 39 1 8.2695 -3.1917 -3.4215 40 1 8.8421 -5.2522 -4.6417 41 1 8.0640 -7.5789 -1.2943 42 1 3.6518 -1.5744 -2.1952 43 1 3.9900 0.0001 -1.4343 44 1 1.2056 -2.0073 -5.2656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071821143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:15 Heat of formation + Delta-G solvation = 14.031931 kcal Electronic energy + Delta-G solvation = -27476.005566 eV Core-core repulsion = 23647.724894 eV Total energy + Delta-G solvation = -3828.280672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.64352 -39.53690 -37.91373 -36.77721 -34.66317 -33.97585 -32.83445 -31.23159 -31.02770 -30.69042 -28.67368 -26.12124 -24.86441 -23.74549 -23.07015 -22.58681 -20.86134 -20.30619 -19.31972 -17.25603 -17.09145 -16.92938 -16.52462 -16.25534 -15.80781 -15.06427 -14.78905 -14.58241 -14.36859 -14.16281 -13.81309 -13.58613 -13.43278 -13.17044 -13.03475 -12.68400 -12.41047 -12.16472 -12.12808 -11.84583 -11.72347 -11.43809 -11.38799 -11.28214 -10.80910 -10.73917 -10.38527 -10.28262 -10.06108 -9.99091 -9.76615 -9.67775 -9.55877 -9.35875 -9.09760 -8.86794 -8.50188 -6.91550 -5.90239 -3.28311 0.76458 0.90477 1.88003 2.80277 3.22152 3.36048 3.47034 3.50230 3.58640 4.19701 4.23706 4.41351 4.56995 4.71345 4.80254 4.96846 5.01422 5.09100 5.18246 5.22009 5.27009 5.39985 5.44634 5.49618 5.60454 5.73444 5.87457 5.91192 5.99265 6.10022 6.22082 6.25379 6.30202 6.33532 6.46463 6.52510 6.58624 6.64562 6.83705 6.99122 7.08583 7.65097 7.67254 8.01101 8.39718 8.42444 8.97378 9.76851 10.12637 11.25382 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.003943 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.500635 B = 7099.471376 C = 8376.065000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.029 0.971 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.127 3.873 7 H 0.091 0.909 8 N -0.725 5.725 9 C 0.512 3.488 10 O -0.515 6.515 11 C -0.111 4.111 12 C -0.010 4.010 13 C -0.149 4.149 14 C 0.103 3.897 15 N -0.472 5.472 16 C 0.114 3.886 17 C -0.072 4.072 18 Cl -0.052 7.052 19 C 0.122 3.878 20 N -0.598 5.598 21 C -0.261 4.261 22 H 0.092 0.908 23 C 0.028 3.972 24 N -0.906 5.906 25 Si 0.880 3.120 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.272 1.272 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.394 0.606 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.144 0.856 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.078 0.922 43 H 0.022 0.978 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.026 -0.820 11.169 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.154 4.154 6 C 0.021 3.979 7 H 0.109 0.891 8 N -0.377 5.377 9 C 0.296 3.704 10 O -0.390 6.390 11 C -0.151 4.151 12 C -0.019 4.019 13 C -0.169 4.169 14 C -0.053 4.053 15 N -0.181 5.181 16 C -0.044 4.044 17 C -0.101 4.101 18 Cl -0.023 7.023 19 C -0.005 4.005 20 N -0.322 5.322 21 C -0.389 4.389 22 H 0.110 0.890 23 C -0.171 4.171 24 N -0.548 5.548 25 Si 0.711 3.289 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.198 1.198 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.227 0.773 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.161 0.839 40 H 0.181 0.819 41 H 0.181 0.819 42 H 0.096 0.904 43 H 0.040 0.960 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.602 -2.247 10.258 19.644 hybrid contribution 0.936 1.611 0.335 1.893 sum 17.538 -0.636 10.593 20.498 Atomic orbital electron populations 1.21814 0.95209 1.02042 1.00400 1.20502 0.93748 0.93290 0.86151 0.95287 1.22053 0.94075 1.01763 0.98859 1.21681 0.97610 0.99528 0.96604 1.21766 0.77891 1.01224 0.96975 0.89059 1.46080 1.08508 1.26850 1.56225 1.20137 0.89331 0.81840 0.79099 1.90817 1.63049 1.41355 1.43745 1.20775 0.95130 0.96721 1.02486 1.19610 0.94995 0.93153 0.94189 1.22078 1.00291 1.01197 0.93371 1.22839 0.94995 0.87251 1.00259 1.67798 1.13262 1.27492 1.09509 1.22739 0.94491 0.97697 0.89491 1.21928 1.04310 0.95582 0.88295 1.98375 1.90301 1.97887 1.15754 1.21673 0.85557 0.96786 0.96514 1.44370 1.01614 1.65294 1.20916 1.18902 0.95662 1.38731 0.85618 0.89015 1.25297 0.97322 0.98570 0.95888 1.69813 1.41198 1.39168 1.04660 0.86968 0.83942 0.81132 0.76879 1.21665 1.23230 1.19755 0.94098 0.91735 0.92324 0.91604 0.92195 0.92151 0.92449 0.77262 0.87225 0.87195 0.83855 0.81902 0.81861 0.90377 0.95991 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.95 37.16 0.30 -2.20 16 2 C 0.17 3.23 3.50 -67.60 -0.24 2.99 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.00 5.37 -26.61 -0.14 -2.14 16 5 C -0.12 -1.66 5.36 -26.69 -0.14 -1.81 16 6 C 0.13 2.26 2.60 -67.83 -0.18 2.08 16 7 H 0.09 1.92 7.58 -51.93 -0.39 1.53 16 8 N -0.73 -10.35 5.08 -53.71 -0.27 -10.63 16 9 C 0.51 8.03 7.69 -10.99 -0.08 7.94 16 10 O -0.52 -10.86 15.64 5.56 0.09 -10.77 16 11 C -0.11 -1.21 5.35 -29.03 -0.16 -1.37 16 12 C -0.01 -0.13 4.45 -104.28 -0.46 -0.59 16 13 C -0.15 -1.72 9.78 -39.45 -0.39 -2.11 16 14 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 15 N -0.47 -6.13 10.36 -13.22 -0.14 -6.26 16 16 C 0.11 1.40 10.99 -17.50 -0.19 1.21 16 17 C -0.07 -0.92 6.26 -39.35 -0.25 -1.17 16 18 Cl -0.05 -0.62 27.60 -51.86 -1.43 -2.05 16 19 C 0.12 2.69 3.78 -3.72 -0.01 2.68 16 20 N -0.60 -14.13 2.75 -164.80 -0.45 -14.58 16 21 C -0.26 -7.30 9.05 -15.06 -0.14 -7.44 16 22 H 0.09 2.69 6.39 -52.49 -0.34 2.36 16 23 C 0.03 0.84 5.24 -17.43 -0.09 0.75 16 24 N -0.91 -28.52 13.97 55.49 0.78 -27.74 16 25 Si 0.88 23.09 24.34 -169.99 -4.14 18.95 16 26 H -0.29 -7.57 6.63 56.52 0.37 -7.19 16 27 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 28 H -0.27 -6.90 6.63 56.52 0.37 -6.53 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 31 H 0.06 1.13 7.40 -51.92 -0.38 0.75 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.39 4.00 8.60 -40.82 -0.35 3.65 16 37 H 0.11 0.89 8.04 -51.93 -0.42 0.47 16 38 H 0.11 0.95 7.45 -51.93 -0.39 0.56 16 39 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.08 2.03 4.62 -51.93 -0.24 1.79 16 43 H 0.02 0.48 7.02 -51.93 -0.36 0.11 16 44 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -35.76 364.74 -8.71 -44.47 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.27 Total: 3.31 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.37 Total: -0.19 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.09 Total: -59.21 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.14 Total: 18.95 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.43 Total: -2.05 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.76 -8.71 -44.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.502 kcal (2) G-P(sol) polarization free energy of solvation -35.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds