Wall clock time and date at job start Tue Mar 31 2020 20:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58441 * 2 1 4 4 C 1.53188 * 109.58750 * 120.28521 * 2 1 3 5 5 C 1.53045 * 109.31256 * 174.42682 * 4 2 1 6 6 C 1.53040 * 109.52492 * 298.63782 * 5 4 2 7 7 H 1.09003 * 109.49508 * 301.41272 * 6 5 4 8 8 N 1.46499 * 109.49887 * 181.31340 * 6 5 4 9 9 C 1.34773 * 119.99941 * 155.00096 * 8 6 5 10 10 O 1.21278 * 120.00236 * 359.97438 * 9 8 6 11 11 C 1.50696 * 119.99746 * 179.97438 * 9 8 6 12 12 C 1.50706 * 109.47277 * 179.97438 * 11 9 8 13 13 C 1.38650 * 120.79323 * 99.99896 * 12 11 9 14 14 C 1.38182 * 119.17828 * 179.97438 * 13 12 11 15 15 N 1.31886 * 120.79503 * 0.02562 * 14 13 12 16 16 C 1.31843 * 121.73964 * 359.97438 * 15 14 13 17 17 C 1.38359 * 120.74039 * 359.74225 * 16 15 14 18 18 Cl 1.73600 * 120.43109 * 180.28320 * 17 16 15 19 19 C 1.53164 * 109.32819 * 61.37012 * 6 5 4 20 20 N 1.46926 * 108.77118 * 305.35982 * 19 6 5 21 21 C 1.36938 * 120.62847 * 233.62869 * 20 19 6 22 22 H 1.08001 * 119.99545 * 150.84980 * 21 20 19 23 23 C 1.38804 * 120.00214 * 330.84834 * 21 20 19 24 24 N 1.31621 * 120.00284 * 160.75933 * 23 21 20 25 25 Si 1.86799 * 119.99869 * 340.76198 * 23 21 20 26 26 H 1.48502 * 109.47406 * 92.26297 * 25 23 21 27 27 H 1.48504 * 109.47139 * 212.26438 * 25 23 21 28 28 H 1.48494 * 109.47265 * 332.26166 * 25 23 21 29 29 H 1.08997 * 109.47241 * 299.71677 * 1 2 3 30 30 H 1.09000 * 109.47492 * 59.71878 * 1 2 3 31 31 H 1.09010 * 109.47223 * 179.71553 * 1 2 3 32 32 H 1.08998 * 109.50271 * 54.46838 * 4 2 1 33 33 H 1.09003 * 109.52042 * 294.38695 * 4 2 1 34 34 H 1.08994 * 109.46356 * 58.65135 * 5 4 2 35 35 H 1.09000 * 109.45549 * 178.62760 * 5 4 2 36 36 H 0.96997 * 119.99853 * 334.99610 * 8 6 5 37 37 H 1.08997 * 109.47638 * 300.00012 * 11 9 8 38 38 H 1.09006 * 109.47044 * 60.00247 * 11 9 8 39 39 H 1.07998 * 120.41023 * 359.96049 * 13 12 11 40 40 H 1.08003 * 119.60908 * 179.97438 * 14 13 12 41 41 H 1.07994 * 119.63310 * 180.02562 * 16 15 14 42 42 H 1.08995 * 109.59157 * 185.57304 * 19 6 5 43 43 H 1.08998 * 109.70490 * 65.21128 * 19 6 5 44 44 H 0.97003 * 120.00231 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5675 -0.8464 1.1712 6 6 3.9567 -1.6656 -0.0616 7 1 3.4980 -2.6526 -0.0021 8 7 5.4140 -1.8053 -0.1158 9 6 5.9672 -2.8488 -0.7648 10 8 5.2587 -3.6725 -1.3037 11 6 7.4663 -2.9922 -0.8210 12 6 7.8236 -4.2326 -1.5988 13 6 8.2156 -4.1499 -2.9261 14 6 8.5362 -5.3085 -3.6074 15 7 8.4724 -6.4826 -3.0101 16 6 8.1040 -6.6005 -1.7497 17 6 7.7737 -5.4841 -1.0021 18 17 7.2968 -5.6479 0.6591 19 6 3.4650 -0.9486 -1.3226 20 7 2.0225 -0.7010 -1.1936 21 6 1.1536 -1.1162 -2.1672 22 1 0.1366 -1.3724 -1.9097 23 6 1.5801 -1.2078 -3.4850 24 7 0.9074 -1.9430 -4.3448 25 14 3.1087 -0.2876 -4.0380 26 1 4.2943 -1.1718 -3.9041 27 1 2.9540 0.1213 -5.4572 28 1 3.2931 0.9191 -3.1926 29 1 -0.3633 0.5094 0.8925 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3634 -1.0277 -0.0051 32 1 1.6030 -1.7237 1.2935 33 1 1.7660 -0.1646 2.1373 34 1 4.0061 0.1488 1.0991 35 1 3.9378 -1.3424 2.0684 36 1 5.9807 -1.1467 0.3155 37 1 7.8968 -2.1190 -1.3113 38 1 7.8619 -3.0722 0.1916 39 1 8.2695 -3.1917 -3.4215 40 1 8.8421 -5.2522 -4.6417 41 1 8.0640 -7.5789 -1.2943 42 1 3.6518 -1.5744 -2.1952 43 1 3.9900 0.0001 -1.4343 44 1 1.2056 -2.0073 -5.2656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071821143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:14 Heat of formation + Delta-G solvation = -11.930499 kcal Electronic energy + Delta-G solvation = -27477.131382 eV Core-core repulsion = 23647.724894 eV Total energy + Delta-G solvation = -3829.406488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.62568 -40.76800 -39.39894 -37.69768 -36.11725 -34.96161 -34.66454 -32.60032 -32.40724 -32.08442 -29.68649 -27.75130 -26.55447 -24.64528 -24.56021 -23.77244 -22.23978 -21.60397 -20.88028 -18.55040 -18.34850 -18.02773 -17.87284 -17.52866 -17.03526 -16.50433 -16.42187 -15.98590 -15.49134 -15.28270 -15.13736 -15.00872 -14.74627 -14.65858 -14.38451 -14.00909 -13.70499 -13.58867 -13.43917 -13.06374 -13.02365 -12.74137 -12.65219 -12.52440 -12.49398 -12.30711 -12.07695 -11.76853 -11.69890 -11.42523 -11.31996 -11.11444 -10.76198 -10.67195 -10.57259 -10.13444 -9.99607 -8.86658 -8.16603 -5.48766 -0.13073 -0.00116 0.96093 1.24215 1.30986 1.41038 1.62024 2.11317 2.40508 2.63935 3.07747 3.30408 3.33961 3.41307 3.59845 3.79237 3.86533 3.92456 4.03514 4.11671 4.17454 4.27163 4.34784 4.40626 4.47162 4.57553 4.59771 4.66873 4.73206 4.83304 4.87135 4.98600 4.99756 5.01320 5.12419 5.16654 5.26567 5.45557 5.47282 5.49722 5.64095 5.90548 6.17626 6.57371 6.76056 6.93183 7.30672 7.65063 8.03313 9.03116 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013127 B = 0.003943 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.500635 B = 7099.471376 C = 8376.065000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.158 3.842 3 H 0.048 0.952 4 C -0.122 4.122 5 C -0.107 4.107 6 C 0.138 3.862 7 H 0.050 0.950 8 N -0.710 5.710 9 C 0.507 3.493 10 O -0.577 6.577 11 C -0.101 4.101 12 C -0.028 4.028 13 C -0.155 4.155 14 C 0.094 3.906 15 N -0.493 5.493 16 C 0.101 3.899 17 C -0.086 4.086 18 Cl -0.051 7.051 19 C 0.121 3.879 20 N -0.614 5.614 21 C -0.237 4.237 22 H 0.063 0.937 23 C -0.040 4.040 24 N -0.960 5.960 25 Si 0.946 3.054 26 H -0.292 1.292 27 H -0.312 1.312 28 H -0.252 1.252 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.420 0.580 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.167 0.833 40 H 0.190 0.810 41 H 0.178 0.822 42 H 0.033 0.967 43 H 0.037 0.963 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.674 1.702 13.906 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.066 0.934 4 C -0.161 4.161 5 C -0.144 4.144 6 C 0.032 3.968 7 H 0.068 0.932 8 N -0.363 5.363 9 C 0.294 3.706 10 O -0.456 6.456 11 C -0.140 4.140 12 C -0.037 4.037 13 C -0.175 4.175 14 C -0.062 4.062 15 N -0.202 5.202 16 C -0.056 4.056 17 C -0.115 4.115 18 Cl -0.022 7.022 19 C -0.006 4.006 20 N -0.340 5.340 21 C -0.367 4.367 22 H 0.081 0.919 23 C -0.234 4.234 24 N -0.607 5.607 25 Si 0.776 3.224 26 H -0.220 1.220 27 H -0.241 1.241 28 H -0.176 1.176 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.257 0.743 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.184 0.816 40 H 0.207 0.793 41 H 0.195 0.805 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.306 0.338 13.084 23.324 hybrid contribution 0.040 0.789 -0.430 0.899 sum 19.346 1.126 12.654 23.144 Atomic orbital electron populations 1.21763 0.95167 1.00771 1.01273 1.20872 0.94051 0.94115 0.85620 0.93429 1.21977 0.94984 1.00752 0.98371 1.21666 0.96636 1.00523 0.95614 1.21306 0.79736 0.99125 0.96668 0.93188 1.45862 1.07310 1.27277 1.55849 1.20981 0.91146 0.80916 0.77596 1.90805 1.64915 1.43585 1.46278 1.20829 0.91305 0.97488 1.04397 1.19935 0.95163 0.93677 0.94896 1.22420 0.99652 1.02250 0.93168 1.23351 0.94417 0.86964 1.01453 1.67827 1.14020 1.28467 1.09890 1.23032 0.94500 0.98496 0.89583 1.22084 1.04705 0.96075 0.88589 1.98365 1.90361 1.97912 1.15549 1.21632 0.84925 0.96877 0.97144 1.44567 1.01857 1.66243 1.21332 1.18895 0.95251 1.35999 0.86585 0.91887 1.25961 1.00859 1.00202 0.96388 1.69963 1.43920 1.41979 1.04840 0.85898 0.80323 0.80186 0.76003 1.22024 1.24114 1.17597 0.89733 0.94338 0.94650 0.93641 0.88000 0.89391 0.89289 0.74255 0.83632 0.84489 0.81586 0.79348 0.80493 0.94843 0.94518 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.95 71.98 0.57 -4.11 16 2 C 0.16 5.64 3.50 44.97 0.16 5.79 16 3 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.12 -3.34 5.37 30.67 0.16 -3.18 16 5 C -0.11 -2.55 5.36 30.62 0.16 -2.39 16 6 C 0.14 4.65 2.60 45.06 0.12 4.77 16 7 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 8 N -0.71 -18.08 5.08 -442.22 -2.25 -20.32 16 9 C 0.51 14.98 7.69 87.66 0.67 15.65 16 10 O -0.58 -24.58 15.64 -3.02 -0.05 -24.62 16 11 C -0.10 -1.89 5.35 29.10 0.16 -1.74 16 12 C -0.03 -0.65 4.45 -19.65 -0.09 -0.73 16 13 C -0.16 -3.31 9.78 22.35 0.22 -3.09 16 14 C 0.09 2.06 11.18 84.67 0.95 3.01 16 15 N -0.49 -12.63 10.36 -195.75 -2.03 -14.65 16 16 C 0.10 2.48 10.99 84.72 0.93 3.41 16 17 C -0.09 -2.12 6.26 22.42 0.14 -1.98 16 18 Cl -0.05 -1.16 27.60 -2.72 -0.08 -1.24 16 19 C 0.12 5.19 3.78 86.35 0.33 5.52 16 20 N -0.61 -28.82 2.75 -675.30 -1.86 -30.68 16 21 C -0.24 -13.74 9.05 84.03 0.76 -12.98 16 22 H 0.06 3.92 6.39 -2.91 -0.02 3.91 16 23 C -0.04 -2.46 5.24 84.86 0.44 -2.01 16 24 N -0.96 -63.68 13.97 21.65 0.30 -63.38 16 25 Si 0.95 49.16 24.34 68.60 1.67 50.83 16 26 H -0.29 -15.17 6.63 99.48 0.66 -14.52 16 27 H -0.31 -16.40 7.11 99.48 0.71 -15.69 16 28 H -0.25 -12.02 6.63 99.48 0.66 -11.36 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.04 1.52 7.66 -2.39 -0.02 1.51 16 31 H 0.03 1.38 7.40 -2.38 -0.02 1.36 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.42 6.42 8.60 -92.71 -0.80 5.62 16 37 H 0.15 1.68 8.04 -2.39 -0.02 1.66 16 38 H 0.14 1.82 7.45 -2.38 -0.02 1.80 16 39 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 40 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 42 H 0.03 1.75 4.62 -2.39 -0.01 1.74 16 43 H 0.04 1.47 7.02 -2.39 -0.02 1.46 16 44 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -84.95 364.74 1.54 -83.41 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.13 Total: 14.71 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.69 Total: 5.94 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -5.83 Total: -129.03 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.62 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 1.67 Total: 50.83 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -84.95 1.54 -83.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.480 kcal (2) G-P(sol) polarization free energy of solvation -84.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds