Wall clock time and date at job start Tue Mar 31 2020 20:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.69511 * 2 1 4 4 C 1.53183 * 109.58579 * 239.64674 * 2 1 3 5 5 C 1.53047 * 109.31168 * 185.57627 * 4 2 1 6 6 C 1.53033 * 109.53887 * 61.36078 * 5 4 2 7 7 H 1.09004 * 109.50156 * 58.58925 * 6 5 4 8 8 N 1.46503 * 109.50000 * 178.68348 * 6 5 4 9 9 C 1.34774 * 120.00123 * 205.00209 * 8 6 5 10 10 O 1.21272 * 120.00353 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99552 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.46643 * 180.02562 * 11 9 8 13 13 C 1.38651 * 120.79946 * 100.00468 * 12 11 9 14 14 C 1.38185 * 119.18297 * 179.97438 * 13 12 11 15 15 N 1.31881 * 120.79425 * 359.97438 * 14 13 12 16 16 C 1.31849 * 121.73847 * 0.02562 * 15 14 13 17 17 C 1.38351 * 120.74179 * 359.73990 * 16 15 14 18 18 Cl 1.73604 * 120.43269 * 180.28669 * 17 16 15 19 19 C 1.53194 * 109.31496 * 298.63809 * 6 5 4 20 20 N 1.46920 * 109.58733 * 120.35062 * 2 1 3 21 21 C 1.36936 * 120.63524 * 353.38011 * 20 2 1 22 22 H 1.08001 * 120.00084 * 29.01937 * 21 20 2 23 23 C 1.38812 * 119.99902 * 209.02728 * 21 20 2 24 24 N 1.31617 * 120.00378 * 15.02493 * 23 21 20 25 25 Si 1.86807 * 119.99569 * 195.02543 * 23 21 20 26 26 H 1.48498 * 109.47304 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.46961 * 120.00130 * 25 23 21 28 28 H 1.48508 * 109.46828 * 239.99645 * 25 23 21 29 29 H 1.09003 * 109.47098 * 180.36035 * 1 2 3 30 30 H 1.09006 * 109.47277 * 300.35419 * 1 2 3 31 31 H 1.08993 * 109.47712 * 60.35639 * 1 2 3 32 32 H 1.08997 * 109.50501 * 65.62571 * 4 2 1 33 33 H 1.09003 * 109.49751 * 305.51959 * 4 2 1 34 34 H 1.08997 * 109.46049 * 181.38639 * 5 4 2 35 35 H 1.09000 * 109.45973 * 301.33853 * 5 4 2 36 36 H 0.97003 * 119.99439 * 24.99989 * 8 6 5 37 37 H 1.08994 * 109.47474 * 300.00091 * 11 9 8 38 38 H 1.09000 * 109.47339 * 60.00285 * 11 9 8 39 39 H 1.08002 * 120.40691 * 359.97438 * 13 12 11 40 40 H 1.07999 * 119.60530 * 179.97438 * 14 13 12 41 41 H 1.08001 * 119.63227 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.58807 * 174.42579 * 19 6 5 43 43 H 1.09000 * 109.58258 * 294.69973 * 19 6 5 44 44 H 0.96999 * 120.00020 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 6 3.9570 -1.6655 0.0635 7 1 3.4984 -2.6527 0.0053 8 7 5.4143 -1.8051 0.1175 9 6 5.9678 -2.8479 0.7677 10 8 5.2594 -3.6704 1.3084 11 6 7.4669 -2.9917 0.8227 12 6 7.8243 -4.2310 1.6020 13 6 8.1696 -5.4048 0.9497 14 6 8.4919 -6.5214 1.6974 15 7 8.4743 -6.4795 3.0154 16 6 8.1511 -5.3817 3.6702 17 6 7.8214 -4.2233 2.9894 18 17 7.4044 -2.7802 3.8597 19 6 3.4651 -0.9468 1.3238 20 7 2.0225 -0.6994 1.1945 21 6 1.1538 -1.1126 2.1690 22 1 0.1360 -1.3670 1.9126 23 6 1.5814 -1.2044 3.4865 24 7 2.7045 -0.6261 3.8557 25 14 0.5625 -2.1487 4.7354 26 1 -0.6466 -2.7001 4.0725 27 1 1.3717 -3.2610 5.2948 28 1 0.1521 -1.2350 5.8318 29 1 -0.3633 -1.0277 0.0065 30 1 -0.3634 0.5193 0.8868 31 1 -0.3634 0.5082 -0.8931 32 1 1.7660 -0.1668 -2.1368 33 1 1.6030 -1.7253 -1.2912 34 1 3.9378 -1.3446 -2.0668 35 1 4.0061 0.1475 -1.0994 36 1 5.9809 -1.1469 -0.3147 37 1 7.8616 -3.0733 -0.1900 38 1 7.8981 -2.1179 1.3113 39 1 8.1865 -5.4459 -0.1294 40 1 8.7615 -7.4394 1.1964 41 1 8.1482 -5.3854 4.7502 42 1 3.6519 -1.5715 2.1972 43 1 3.9922 0.0010 1.4330 44 1 3.0034 -0.6905 4.7762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071821144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:20 Heat of formation + Delta-G solvation = -14.378490 kcal Electronic energy + Delta-G solvation = -27472.573791 eV Core-core repulsion = 23643.061151 eV Total energy + Delta-G solvation = -3829.512641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.54984 -40.62614 -39.18993 -37.65447 -35.99014 -34.89783 -34.65064 -32.33055 -32.03776 -31.72505 -29.60719 -27.64376 -26.62412 -24.57941 -24.14404 -23.68977 -22.19368 -21.40803 -20.83913 -18.35675 -18.22672 -17.94579 -17.81880 -17.30350 -16.97666 -16.49941 -15.99822 -15.66481 -15.46681 -15.25812 -15.02673 -14.93251 -14.72386 -14.38509 -14.16592 -13.85804 -13.60601 -13.39310 -13.08794 -13.02046 -12.80163 -12.72236 -12.62785 -12.53685 -12.28145 -12.26663 -12.10679 -11.97138 -11.65470 -11.40130 -11.13497 -11.02284 -10.63180 -10.54658 -10.49016 -10.01897 -9.96060 -8.61993 -7.85415 -5.30966 -0.08357 0.03966 1.04754 1.36978 1.41837 1.49008 1.72313 2.23762 2.48692 2.70486 3.31189 3.36910 3.43988 3.64744 3.67539 3.91473 3.92713 4.05209 4.11104 4.20962 4.29666 4.38190 4.42532 4.52951 4.61381 4.64318 4.71897 4.78041 4.84156 4.90493 5.00904 5.06731 5.08380 5.20036 5.32569 5.36997 5.51580 5.53101 5.55183 5.62948 5.70394 5.84916 6.41175 6.68111 6.79700 7.16403 7.40547 7.91132 8.39108 9.18855 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.004069 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.636913 B = 6880.039525 C = 8317.932818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.133 3.867 7 H 0.048 0.952 8 N -0.708 5.708 9 C 0.511 3.489 10 O -0.579 6.579 11 C -0.100 4.100 12 C -0.026 4.026 13 C -0.144 4.144 14 C 0.095 3.905 15 N -0.493 5.493 16 C 0.097 3.903 17 C -0.093 4.093 18 Cl -0.062 7.062 19 C 0.180 3.820 20 N -0.604 5.604 21 C -0.248 4.248 22 H 0.074 0.926 23 C -0.050 4.050 24 N -0.929 5.929 25 Si 0.949 3.051 26 H -0.262 1.262 27 H -0.303 1.303 28 H -0.288 1.288 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.157 0.843 38 H 0.120 0.880 39 H 0.181 0.819 40 H 0.197 0.803 41 H 0.168 0.832 42 H 0.043 0.957 43 H -0.005 1.005 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.076 -4.016 -13.663 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.027 3.973 7 H 0.067 0.933 8 N -0.361 5.361 9 C 0.297 3.703 10 O -0.457 6.457 11 C -0.139 4.139 12 C -0.035 4.035 13 C -0.163 4.163 14 C -0.061 4.061 15 N -0.202 5.202 16 C -0.060 4.060 17 C -0.122 4.122 18 Cl -0.033 7.033 19 C 0.053 3.947 20 N -0.329 5.329 21 C -0.379 4.379 22 H 0.091 0.909 23 C -0.245 4.245 24 N -0.576 5.576 25 Si 0.778 3.222 26 H -0.187 1.187 27 H -0.231 1.231 28 H -0.215 1.215 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.251 0.749 37 H 0.175 0.825 38 H 0.138 0.862 39 H 0.198 0.802 40 H 0.214 0.786 41 H 0.185 0.815 42 H 0.062 0.938 43 H 0.013 0.987 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 13.773 -5.196 -12.590 19.370 hybrid contribution -0.612 0.863 1.211 1.608 sum 13.161 -4.333 -11.379 17.930 Atomic orbital electron populations 1.21737 0.94912 1.01057 1.01020 1.20803 0.94185 0.93373 0.86835 0.96111 1.21950 0.94881 1.00753 0.98195 1.21642 0.96830 1.00011 0.95976 1.21448 0.79599 0.98853 0.97413 0.93336 1.45842 1.07461 1.27074 1.55676 1.20878 0.90987 0.80963 0.77441 1.90763 1.64940 1.44071 1.45976 1.20808 0.91465 0.96915 1.04754 1.19960 0.95206 0.97063 0.91320 1.22452 0.99067 0.91264 1.03553 1.23475 0.94048 0.99686 0.88930 1.67823 1.14207 1.26541 1.11627 1.22885 0.95172 0.86556 1.01391 1.22233 1.05144 0.90877 0.93932 1.98418 1.91850 1.36764 1.76262 1.20764 0.83466 0.95180 0.95252 1.44345 1.02703 1.65657 1.20156 1.19488 0.95135 1.36519 0.86743 0.90886 1.25709 0.98928 1.01094 0.98813 1.70150 1.24846 1.46324 1.16244 0.85467 0.78758 0.78155 0.79798 1.18658 1.23082 1.21494 0.93665 0.94438 0.90242 0.88639 0.93073 0.89370 0.90870 0.74858 0.82493 0.86236 0.80195 0.78579 0.81464 0.93829 0.98745 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.94 71.98 0.57 -4.10 16 2 C 0.15 6.04 3.50 44.97 0.16 6.20 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -3.58 5.37 30.67 0.16 -3.42 16 5 C -0.11 -2.97 5.35 30.62 0.16 -2.81 16 6 C 0.13 4.99 2.60 45.07 0.12 5.10 16 7 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 8 N -0.71 -20.74 5.08 -442.17 -2.25 -22.99 16 9 C 0.51 16.35 7.69 87.66 0.67 17.02 16 10 O -0.58 -25.56 15.63 -3.00 -0.05 -25.61 16 11 C -0.10 -2.09 5.35 29.10 0.16 -1.93 16 12 C -0.03 -0.65 4.45 -19.65 -0.09 -0.74 16 13 C -0.14 -2.69 9.78 22.36 0.22 -2.48 16 14 C 0.10 1.88 11.18 84.67 0.95 2.82 16 15 N -0.49 -12.82 10.36 -195.75 -2.03 -14.85 16 16 C 0.10 2.69 10.99 84.72 0.93 3.62 16 17 C -0.09 -2.71 6.26 22.42 0.14 -2.57 16 18 Cl -0.06 -2.02 27.60 -2.72 -0.08 -2.09 16 19 C 0.18 8.95 4.86 86.36 0.42 9.37 16 20 N -0.60 -30.62 2.99 -675.25 -2.02 -32.64 16 21 C -0.25 -14.03 8.61 84.03 0.72 -13.31 16 22 H 0.07 4.00 6.20 -2.91 -0.02 3.98 16 23 C -0.05 -2.97 4.96 84.86 0.42 -2.55 16 24 N -0.93 -58.13 11.14 21.65 0.24 -57.89 16 25 Si 0.95 48.41 29.58 68.60 2.03 50.44 16 26 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.30 -16.06 7.11 99.48 0.71 -15.35 16 28 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 29 H 0.04 1.68 7.40 -2.39 -0.02 1.66 16 30 H 0.04 1.49 7.66 -2.38 -0.02 1.48 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.41 8.34 8.60 -92.71 -0.80 7.54 16 37 H 0.16 1.65 8.04 -2.39 -0.02 1.64 16 38 H 0.12 2.31 7.45 -2.39 -0.02 2.29 16 39 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.20 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 42 H 0.04 2.63 6.06 -2.39 -0.01 2.62 16 43 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -82.06 371.08 1.80 -80.26 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.22 Total: 15.12 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 5.72 Total: 10.24 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -6.05 Total: -128.36 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.09 kcal Total: -82.06 1.80 -80.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.884 kcal (2) G-P(sol) polarization free energy of solvation -82.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds