Wall clock time and date at job start Tue Mar 31 2020 20:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58516 * 2 1 4 4 C 1.53190 * 109.58765 * 239.57220 * 2 1 3 5 5 C 1.53042 * 109.31312 * 185.57751 * 4 2 1 6 6 C 1.53047 * 109.53796 * 61.36283 * 5 4 2 7 7 H 1.08995 * 109.52253 * 178.66820 * 6 5 4 8 8 N 1.46504 * 109.49602 * 58.58441 * 6 5 4 9 9 C 1.34774 * 119.99485 * 155.16553 * 8 6 5 10 10 O 1.21283 * 120.00269 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99894 * 179.72752 * 9 8 6 12 12 C 1.50701 * 109.47047 * 180.27088 * 11 9 8 13 13 C 1.38656 * 120.79106 * 99.99752 * 12 11 9 14 14 C 1.38185 * 119.17134 * 179.97438 * 13 12 11 15 15 N 1.31882 * 120.79747 * 0.02562 * 14 13 12 16 16 C 1.31840 * 121.73872 * 359.97438 * 15 14 13 17 17 C 1.38350 * 120.74583 * 359.73814 * 16 15 14 18 18 Cl 1.73597 * 120.43643 * 180.28715 * 17 16 15 19 19 C 1.53194 * 109.30831 * 298.63536 * 6 5 4 20 20 N 1.46919 * 109.58776 * 120.27704 * 2 1 3 21 21 C 1.36943 * 120.63048 * 353.42106 * 20 2 1 22 22 H 1.07996 * 120.00103 * 29.00552 * 21 20 2 23 23 C 1.38814 * 119.99834 * 209.00438 * 21 20 2 24 24 N 1.31617 * 120.00207 * 15.01697 * 23 21 20 25 25 Si 1.86801 * 119.99769 * 195.01772 * 23 21 20 26 26 H 1.48504 * 109.47352 * 59.99832 * 25 23 21 27 27 H 1.48501 * 109.46926 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46944 * 299.99963 * 25 23 21 29 29 H 1.09000 * 109.47159 * 299.72324 * 1 2 3 30 30 H 1.08997 * 109.47249 * 59.71866 * 1 2 3 31 31 H 1.08999 * 109.47500 * 179.72148 * 1 2 3 32 32 H 1.09001 * 109.49358 * 305.52593 * 4 2 1 33 33 H 1.08999 * 109.49959 * 65.62272 * 4 2 1 34 34 H 1.08997 * 109.45527 * 301.34272 * 5 4 2 35 35 H 1.08996 * 109.45970 * 181.37810 * 5 4 2 36 36 H 0.96993 * 120.00142 * 335.16118 * 8 6 5 37 37 H 1.09004 * 109.46591 * 300.27271 * 11 9 8 38 38 H 1.09000 * 109.47107 * 60.27240 * 11 9 8 39 39 H 1.08002 * 120.41056 * 359.95874 * 13 12 11 40 40 H 1.08003 * 119.60079 * 180.02562 * 14 13 12 41 41 H 1.07998 * 119.62699 * 180.02562 * 16 15 14 42 42 H 1.09006 * 109.58154 * 174.42535 * 19 6 5 43 43 H 1.09003 * 109.58782 * 294.84475 * 19 6 5 44 44 H 0.97005 * 119.99997 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2445 5 6 3.5675 -0.8494 -1.1690 6 6 3.9570 -1.6656 0.0657 7 1 5.0411 -1.7699 0.1063 8 7 3.3405 -2.9924 -0.0108 9 6 3.8952 -4.0318 0.6436 10 8 4.9049 -3.8689 1.2955 11 6 3.2578 -5.3954 0.5699 12 6 4.0638 -6.3716 1.3875 13 6 3.6614 -6.7295 2.6652 14 6 4.4256 -7.6280 3.3852 15 7 5.5255 -8.1429 2.8711 16 6 5.9392 -7.8264 1.6599 17 6 5.2230 -6.9381 0.8775 18 17 5.7711 -6.5327 -0.7190 19 6 3.4650 -0.9451 1.3250 20 7 2.0225 -0.6979 1.1954 21 6 1.1536 -1.1106 2.1700 22 1 0.1360 -1.3656 1.9135 23 6 1.5808 -1.2011 3.4877 24 7 2.7038 -0.6224 3.8567 25 14 0.5618 -2.1445 4.7371 26 1 0.4325 -3.5590 4.3038 27 1 1.2306 -2.0923 6.0620 28 1 -0.7875 -1.5326 4.8386 29 1 -0.3633 0.5095 0.8924 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3634 -1.0276 -0.0050 32 1 1.6030 -1.7269 -1.2890 33 1 1.7660 -0.1696 -2.1366 34 1 4.0061 0.1460 -1.0995 35 1 3.9378 -1.3475 -2.0650 36 1 2.5332 -3.1227 -0.5324 37 1 2.2424 -5.3435 0.9630 38 1 3.2290 -5.7275 -0.4679 39 1 2.7621 -6.3110 3.0925 40 1 4.1183 -7.9119 4.3809 41 1 6.8449 -8.2690 1.2725 42 1 3.6519 -1.5688 2.1992 43 1 3.9903 0.0040 1.4317 44 1 3.0021 -0.6854 4.7776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071821146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:32 Heat of formation + Delta-G solvation = 9.887700 kcal Electronic energy + Delta-G solvation = -27965.935006 eV Core-core repulsion = 24137.474626 eV Total energy + Delta-G solvation = -3828.460380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.46125 -39.32590 -37.59546 -36.64945 -34.18539 -33.74078 -32.75525 -31.08621 -30.85807 -29.91658 -28.36378 -26.13520 -24.96755 -23.59290 -22.84770 -22.18130 -20.71860 -20.24144 -18.74530 -17.10954 -16.92465 -16.77012 -16.24159 -16.01615 -15.40607 -14.91244 -14.48333 -14.26760 -14.05382 -13.94557 -13.83001 -13.38917 -13.12237 -13.00983 -12.85011 -12.44261 -12.39154 -12.02814 -11.96203 -11.54313 -11.26357 -11.23906 -11.18728 -10.97286 -10.90278 -10.73611 -10.42072 -10.36289 -9.98728 -9.81763 -9.63725 -9.55531 -9.47187 -9.21863 -8.96664 -8.47156 -8.35882 -6.61903 -5.76541 -3.20951 0.90361 1.07024 2.00673 3.15871 3.33488 3.39205 3.42326 3.51673 3.86125 4.35619 4.42777 4.46878 4.60737 4.88641 5.12896 5.24935 5.29267 5.32006 5.35282 5.45133 5.49222 5.53401 5.57463 5.58262 5.77334 5.99677 6.07751 6.09980 6.13809 6.31102 6.32697 6.42548 6.44999 6.51555 6.58886 6.68549 6.89337 7.02606 7.10626 7.38939 7.69254 7.77358 7.80932 8.08964 8.47370 8.78691 9.21699 9.86335 10.42769 11.31187 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.004628 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.332840 B = 6048.463323 C = 7736.195663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.120 3.880 7 H 0.074 0.926 8 N -0.699 5.699 9 C 0.521 3.479 10 O -0.537 6.537 11 C -0.113 4.113 12 C -0.003 4.003 13 C -0.147 4.147 14 C 0.101 3.899 15 N -0.475 5.475 16 C 0.110 3.890 17 C -0.073 4.073 18 Cl -0.055 7.055 19 C 0.162 3.838 20 N -0.582 5.582 21 C -0.251 4.251 22 H 0.067 0.933 23 C 0.006 3.994 24 N -0.898 5.898 25 Si 0.896 3.104 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.394 0.606 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.098 0.902 43 H 0.023 0.977 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 -10.571 -10.243 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.092 0.908 8 N -0.349 5.349 9 C 0.305 3.695 10 O -0.414 6.414 11 C -0.153 4.153 12 C -0.013 4.013 13 C -0.167 4.167 14 C -0.055 4.055 15 N -0.184 5.184 16 C -0.048 4.048 17 C -0.101 4.101 18 Cl -0.026 7.026 19 C 0.036 3.964 20 N -0.306 5.306 21 C -0.381 4.381 22 H 0.085 0.915 23 C -0.193 4.193 24 N -0.542 5.542 25 Si 0.726 3.274 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.229 0.771 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.163 0.837 40 H 0.180 0.820 41 H 0.179 0.821 42 H 0.116 0.884 43 H 0.041 0.959 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.247 -10.964 -9.229 14.506 hybrid contribution -1.380 0.255 -0.098 1.406 sum 0.867 -10.708 -9.327 14.227 Atomic orbital electron populations 1.21794 0.96152 1.01148 1.00195 1.20457 0.92847 0.93643 0.87227 0.95835 1.22057 0.95155 1.00631 0.99047 1.21688 0.96990 1.00148 0.96833 1.21762 0.96900 0.81776 0.98143 0.90767 1.45769 1.29462 1.08589 1.51105 1.19878 0.84660 0.85259 0.79653 1.90716 1.25159 1.84857 1.40626 1.20774 1.00485 0.92463 1.01551 1.19653 0.93144 0.94021 0.94436 1.22138 1.02299 0.98700 0.93549 1.22814 0.90004 0.92873 0.99827 1.67778 1.14565 1.24449 1.11563 1.22682 0.98713 0.94025 0.89362 1.21907 0.97286 1.01372 0.89581 1.98364 1.89068 1.93047 1.22147 1.21185 0.83660 0.97014 0.94584 1.44038 1.02708 1.64896 1.18941 1.19034 0.94610 1.38261 0.86167 0.91505 1.25060 0.97647 0.99682 0.96945 1.69970 1.23123 1.44200 1.16934 0.86479 0.79663 0.80115 0.81114 1.21224 1.21690 1.20996 0.92061 0.94455 0.92999 0.92675 0.92921 0.91194 0.93084 0.77110 0.87098 0.87662 0.83713 0.82027 0.82072 0.88441 0.95870 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.94 37.16 0.30 -2.06 16 2 C 0.16 3.14 3.50 -67.60 -0.24 2.90 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.97 5.21 -26.61 -0.14 -2.11 16 5 C -0.12 -1.82 5.59 -26.69 -0.15 -1.97 16 6 C 0.12 2.22 2.81 -67.80 -0.19 2.03 16 7 H 0.07 1.45 7.58 -51.93 -0.39 1.05 16 8 N -0.70 -11.79 4.92 -53.68 -0.26 -12.05 16 9 C 0.52 9.20 7.69 -10.98 -0.08 9.12 16 10 O -0.54 -11.64 15.64 5.55 0.09 -11.55 16 11 C -0.11 -1.53 5.35 -29.03 -0.16 -1.69 16 12 C 0.00 -0.05 4.45 -104.28 -0.46 -0.51 16 13 C -0.15 -1.99 9.78 -39.45 -0.39 -2.38 16 14 C 0.10 1.30 11.18 -17.55 -0.20 1.10 16 15 N -0.47 -6.58 10.36 -13.23 -0.14 -6.72 16 16 C 0.11 1.44 10.99 -17.51 -0.19 1.25 16 17 C -0.07 -1.00 6.26 -39.36 -0.25 -1.25 16 18 Cl -0.06 -0.70 27.60 -51.86 -1.43 -2.13 16 19 C 0.16 3.77 4.89 -3.71 -0.02 3.76 16 20 N -0.58 -13.37 2.91 -164.78 -0.48 -13.85 16 21 C -0.25 -6.38 8.60 -15.06 -0.13 -6.51 16 22 H 0.07 1.65 6.21 -52.49 -0.33 1.33 16 23 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 24 N -0.90 -25.91 11.14 55.49 0.62 -25.29 16 25 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.06 1.18 7.62 -51.93 -0.40 0.79 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.90 7.44 -51.93 -0.39 0.51 16 32 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.39 5.82 6.77 -40.82 -0.28 5.54 16 37 H 0.11 1.36 8.04 -51.93 -0.42 0.95 16 38 H 0.11 1.17 7.45 -51.93 -0.39 0.79 16 39 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.16 1.60 8.06 -52.48 -0.42 1.17 16 41 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.10 2.69 6.06 -51.93 -0.31 2.37 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -31.49 367.56 -9.64 -41.13 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.17 Total: 6.99 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.38 Total: 1.75 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.26 Total: -57.91 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.43 Total: -2.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.49 -9.64 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.022 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds