Wall clock time and date at job start Tue Mar 31 2020 20:04:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 109.58516 * 2 1
4 4 C 1.53190 * 109.58765 * 239.57220 * 2 1 3
5 5 C 1.53042 * 109.31312 * 185.57751 * 4 2 1
6 6 C 1.53047 * 109.53796 * 61.36283 * 5 4 2
7 7 H 1.08995 * 109.52253 * 178.66820 * 6 5 4
8 8 N 1.46504 * 109.49602 * 58.58441 * 6 5 4
9 9 C 1.34774 * 119.99485 * 155.16553 * 8 6 5
10 10 O 1.21283 * 120.00269 * 359.97438 * 9 8 6
11 11 C 1.50706 * 119.99894 * 179.72752 * 9 8 6
12 12 C 1.50701 * 109.47047 * 180.27088 * 11 9 8
13 13 C 1.38656 * 120.79106 * 99.99752 * 12 11 9
14 14 C 1.38185 * 119.17134 * 179.97438 * 13 12 11
15 15 N 1.31882 * 120.79747 * 0.02562 * 14 13 12
16 16 C 1.31840 * 121.73872 * 359.97438 * 15 14 13
17 17 C 1.38350 * 120.74583 * 359.73814 * 16 15 14
18 18 Cl 1.73597 * 120.43643 * 180.28715 * 17 16 15
19 19 C 1.53194 * 109.30831 * 298.63536 * 6 5 4
20 20 N 1.46919 * 109.58776 * 120.27704 * 2 1 3
21 21 C 1.36943 * 120.63048 * 353.42106 * 20 2 1
22 22 H 1.07996 * 120.00103 * 29.00552 * 21 20 2
23 23 C 1.38814 * 119.99834 * 209.00438 * 21 20 2
24 24 N 1.31617 * 120.00207 * 15.01697 * 23 21 20
25 25 Si 1.86801 * 119.99769 * 195.01772 * 23 21 20
26 26 H 1.48504 * 109.47352 * 59.99832 * 25 23 21
27 27 H 1.48501 * 109.46926 * 179.97438 * 25 23 21
28 28 H 1.48500 * 109.46944 * 299.99963 * 25 23 21
29 29 H 1.09000 * 109.47159 * 299.72324 * 1 2 3
30 30 H 1.08997 * 109.47249 * 59.71866 * 1 2 3
31 31 H 1.08999 * 109.47500 * 179.72148 * 1 2 3
32 32 H 1.09001 * 109.49358 * 305.52593 * 4 2 1
33 33 H 1.08999 * 109.49959 * 65.62272 * 4 2 1
34 34 H 1.08997 * 109.45527 * 301.34272 * 5 4 2
35 35 H 1.08996 * 109.45970 * 181.37810 * 5 4 2
36 36 H 0.96993 * 120.00142 * 335.16118 * 8 6 5
37 37 H 1.09004 * 109.46591 * 300.27271 * 11 9 8
38 38 H 1.09000 * 109.47107 * 60.27240 * 11 9 8
39 39 H 1.08002 * 120.41056 * 359.95874 * 13 12 11
40 40 H 1.08003 * 119.60079 * 180.02562 * 14 13 12
41 41 H 1.07998 * 119.62699 * 180.02562 * 16 15 14
42 42 H 1.09006 * 109.58154 * 174.42535 * 19 6 5
43 43 H 1.09003 * 109.58782 * 294.84475 * 19 6 5
44 44 H 0.97005 * 119.99997 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0270 0.0000
4 6 2.0436 -0.7309 -1.2445
5 6 3.5675 -0.8494 -1.1690
6 6 3.9570 -1.6656 0.0657
7 1 5.0411 -1.7699 0.1063
8 7 3.3405 -2.9924 -0.0108
9 6 3.8952 -4.0318 0.6436
10 8 4.9049 -3.8689 1.2955
11 6 3.2578 -5.3954 0.5699
12 6 4.0638 -6.3716 1.3875
13 6 3.6614 -6.7295 2.6652
14 6 4.4256 -7.6280 3.3852
15 7 5.5255 -8.1429 2.8711
16 6 5.9392 -7.8264 1.6599
17 6 5.2230 -6.9381 0.8775
18 17 5.7711 -6.5327 -0.7190
19 6 3.4650 -0.9451 1.3250
20 7 2.0225 -0.6979 1.1954
21 6 1.1536 -1.1106 2.1700
22 1 0.1360 -1.3656 1.9135
23 6 1.5808 -1.2011 3.4877
24 7 2.7038 -0.6224 3.8567
25 14 0.5618 -2.1445 4.7371
26 1 0.4325 -3.5590 4.3038
27 1 1.2306 -2.0923 6.0620
28 1 -0.7875 -1.5326 4.8386
29 1 -0.3633 0.5095 0.8924
30 1 -0.3633 0.5182 -0.8874
31 1 -0.3634 -1.0276 -0.0050
32 1 1.6030 -1.7269 -1.2890
33 1 1.7660 -0.1696 -2.1366
34 1 4.0061 0.1460 -1.0995
35 1 3.9378 -1.3475 -2.0650
36 1 2.5332 -3.1227 -0.5324
37 1 2.2424 -5.3435 0.9630
38 1 3.2290 -5.7275 -0.4679
39 1 2.7621 -6.3110 3.0925
40 1 4.1183 -7.9119 4.3809
41 1 6.8449 -8.2690 1.2725
42 1 3.6519 -1.5688 2.1992
43 1 3.9903 0.0040 1.4317
44 1 3.0021 -0.6854 4.7776
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071821146.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:04:32
Heat of formation + Delta-G solvation = 9.887700 kcal
Electronic energy + Delta-G solvation = -27965.935006 eV
Core-core repulsion = 24137.474626 eV
Total energy + Delta-G solvation = -3828.460380 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 337.130 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-40.46125 -39.32590 -37.59546 -36.64945 -34.18539 -33.74078 -32.75525 -31.08621
-30.85807 -29.91658 -28.36378 -26.13520 -24.96755 -23.59290 -22.84770 -22.18130
-20.71860 -20.24144 -18.74530 -17.10954 -16.92465 -16.77012 -16.24159 -16.01615
-15.40607 -14.91244 -14.48333 -14.26760 -14.05382 -13.94557 -13.83001 -13.38917
-13.12237 -13.00983 -12.85011 -12.44261 -12.39154 -12.02814 -11.96203 -11.54313
-11.26357 -11.23906 -11.18728 -10.97286 -10.90278 -10.73611 -10.42072 -10.36289
-9.98728 -9.81763 -9.63725 -9.55531 -9.47187 -9.21863 -8.96664 -8.47156
-8.35882 -6.61903 -5.76541 -3.20951 0.90361 1.07024 2.00673 3.15871
3.33488 3.39205 3.42326 3.51673 3.86125 4.35619 4.42777 4.46878
4.60737 4.88641 5.12896 5.24935 5.29267 5.32006 5.35282 5.45133
5.49222 5.53401 5.57463 5.58262 5.77334 5.99677 6.07751 6.09980
6.13809 6.31102 6.32697 6.42548 6.44999 6.51555 6.58886 6.68549
6.89337 7.02606 7.10626 7.38939 7.69254 7.77358 7.80932 8.08964
8.47370 8.78691 9.21699 9.86335 10.42769 11.31187
Molecular weight = 337.13amu
Principal moments of inertia in cm(-1)
A = 0.011590 B = 0.004628 C = 0.003618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2415.332840 B = 6048.463323 C = 7736.195663
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.165 3.835
3 H 0.024 0.976
4 C -0.129 4.129
5 C -0.118 4.118
6 C 0.120 3.880
7 H 0.074 0.926
8 N -0.699 5.699
9 C 0.521 3.479
10 O -0.537 6.537
11 C -0.113 4.113
12 C -0.003 4.003
13 C -0.147 4.147
14 C 0.101 3.899
15 N -0.475 5.475
16 C 0.110 3.890
17 C -0.073 4.073
18 Cl -0.055 7.055
19 C 0.162 3.838
20 N -0.582 5.582
21 C -0.251 4.251
22 H 0.067 0.933
23 C 0.006 3.994
24 N -0.898 5.898
25 Si 0.896 3.104
26 H -0.286 1.286
27 H -0.291 1.291
28 H -0.284 1.284
29 H 0.060 0.940
30 H 0.036 0.964
31 H 0.051 0.949
32 H 0.055 0.945
33 H 0.052 0.948
34 H 0.069 0.931
35 H 0.050 0.950
36 H 0.394 0.606
37 H 0.111 0.889
38 H 0.105 0.895
39 H 0.145 0.855
40 H 0.163 0.837
41 H 0.162 0.838
42 H 0.098 0.902
43 H 0.023 0.977
44 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.915 -10.571 -10.243 14.748
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.058 3.942
3 H 0.042 0.958
4 C -0.169 4.169
5 C -0.157 4.157
6 C 0.014 3.986
7 H 0.092 0.908
8 N -0.349 5.349
9 C 0.305 3.695
10 O -0.414 6.414
11 C -0.153 4.153
12 C -0.013 4.013
13 C -0.167 4.167
14 C -0.055 4.055
15 N -0.184 5.184
16 C -0.048 4.048
17 C -0.101 4.101
18 Cl -0.026 7.026
19 C 0.036 3.964
20 N -0.306 5.306
21 C -0.381 4.381
22 H 0.085 0.915
23 C -0.193 4.193
24 N -0.542 5.542
25 Si 0.726 3.274
26 H -0.212 1.212
27 H -0.217 1.217
28 H -0.210 1.210
29 H 0.079 0.921
30 H 0.055 0.945
31 H 0.070 0.930
32 H 0.073 0.927
33 H 0.071 0.929
34 H 0.088 0.912
35 H 0.069 0.931
36 H 0.229 0.771
37 H 0.129 0.871
38 H 0.123 0.877
39 H 0.163 0.837
40 H 0.180 0.820
41 H 0.179 0.821
42 H 0.116 0.884
43 H 0.041 0.959
44 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 2.247 -10.964 -9.229 14.506
hybrid contribution -1.380 0.255 -0.098 1.406
sum 0.867 -10.708 -9.327 14.227
Atomic orbital electron populations
1.21794 0.96152 1.01148 1.00195 1.20457 0.92847 0.93643 0.87227
0.95835 1.22057 0.95155 1.00631 0.99047 1.21688 0.96990 1.00148
0.96833 1.21762 0.96900 0.81776 0.98143 0.90767 1.45769 1.29462
1.08589 1.51105 1.19878 0.84660 0.85259 0.79653 1.90716 1.25159
1.84857 1.40626 1.20774 1.00485 0.92463 1.01551 1.19653 0.93144
0.94021 0.94436 1.22138 1.02299 0.98700 0.93549 1.22814 0.90004
0.92873 0.99827 1.67778 1.14565 1.24449 1.11563 1.22682 0.98713
0.94025 0.89362 1.21907 0.97286 1.01372 0.89581 1.98364 1.89068
1.93047 1.22147 1.21185 0.83660 0.97014 0.94584 1.44038 1.02708
1.64896 1.18941 1.19034 0.94610 1.38261 0.86167 0.91505 1.25060
0.97647 0.99682 0.96945 1.69970 1.23123 1.44200 1.16934 0.86479
0.79663 0.80115 0.81114 1.21224 1.21690 1.20996 0.92061 0.94455
0.92999 0.92675 0.92921 0.91194 0.93084 0.77110 0.87098 0.87662
0.83713 0.82027 0.82072 0.88441 0.95870 0.93604
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.36 7.94 37.16 0.30 -2.06 16
2 C 0.16 3.14 3.50 -67.60 -0.24 2.90 16
3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
4 C -0.13 -1.97 5.21 -26.61 -0.14 -2.11 16
5 C -0.12 -1.82 5.59 -26.69 -0.15 -1.97 16
6 C 0.12 2.22 2.81 -67.80 -0.19 2.03 16
7 H 0.07 1.45 7.58 -51.93 -0.39 1.05 16
8 N -0.70 -11.79 4.92 -53.68 -0.26 -12.05 16
9 C 0.52 9.20 7.69 -10.98 -0.08 9.12 16
10 O -0.54 -11.64 15.64 5.55 0.09 -11.55 16
11 C -0.11 -1.53 5.35 -29.03 -0.16 -1.69 16
12 C 0.00 -0.05 4.45 -104.28 -0.46 -0.51 16
13 C -0.15 -1.99 9.78 -39.45 -0.39 -2.38 16
14 C 0.10 1.30 11.18 -17.55 -0.20 1.10 16
15 N -0.47 -6.58 10.36 -13.23 -0.14 -6.72 16
16 C 0.11 1.44 10.99 -17.51 -0.19 1.25 16
17 C -0.07 -1.00 6.26 -39.36 -0.25 -1.25 16
18 Cl -0.06 -0.70 27.60 -51.86 -1.43 -2.13 16
19 C 0.16 3.77 4.89 -3.71 -0.02 3.76 16
20 N -0.58 -13.37 2.91 -164.78 -0.48 -13.85 16
21 C -0.25 -6.38 8.60 -15.06 -0.13 -6.51 16
22 H 0.07 1.65 6.21 -52.49 -0.33 1.33 16
23 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16
24 N -0.90 -25.91 11.14 55.49 0.62 -25.29 16
25 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16
26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16
27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
29 H 0.06 1.18 7.62 -51.93 -0.40 0.79 16
30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.05 0.90 7.44 -51.93 -0.39 0.51 16
32 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16
33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
36 H 0.39 5.82 6.77 -40.82 -0.28 5.54 16
37 H 0.11 1.36 8.04 -51.93 -0.42 0.95 16
38 H 0.11 1.17 7.45 -51.93 -0.39 0.79 16
39 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16
40 H 0.16 1.60 8.06 -52.48 -0.42 1.17 16
41 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16
42 H 0.10 2.69 6.06 -51.93 -0.31 2.37 16
43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
LS Contribution 367.56 15.07 5.54 5.54
Total: -1.00 -31.49 367.56 -9.64 -41.13
By element:
Atomic # 1 Polarization: 13.16 SS G_CDS: -6.17 Total: 6.99 kcal
Atomic # 6 Polarization: 4.13 SS G_CDS: -2.38 Total: 1.75 kcal
Atomic # 7 Polarization: -57.65 SS G_CDS: -0.26 Total: -57.91 kcal
Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal
Atomic # 17 Polarization: -0.70 SS G_CDS: -1.43 Total: -2.13 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -31.49 -9.64 -41.13 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071821146.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.022 kcal
(2) G-P(sol) polarization free energy of solvation -31.491 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.531 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.888 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds