Wall clock time and date at job start Tue Mar 31 2020 20:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58516 * 2 1 4 4 C 1.53190 * 109.58765 * 239.57220 * 2 1 3 5 5 C 1.53042 * 109.31312 * 185.57751 * 4 2 1 6 6 C 1.53047 * 109.53796 * 61.36283 * 5 4 2 7 7 H 1.08995 * 109.52253 * 178.66820 * 6 5 4 8 8 N 1.46504 * 109.49602 * 58.58441 * 6 5 4 9 9 C 1.34774 * 119.99485 * 155.16553 * 8 6 5 10 10 O 1.21283 * 120.00269 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99894 * 179.72752 * 9 8 6 12 12 C 1.50701 * 109.47047 * 180.27088 * 11 9 8 13 13 C 1.38656 * 120.79106 * 99.99752 * 12 11 9 14 14 C 1.38185 * 119.17134 * 179.97438 * 13 12 11 15 15 N 1.31882 * 120.79747 * 0.02562 * 14 13 12 16 16 C 1.31840 * 121.73872 * 359.97438 * 15 14 13 17 17 C 1.38350 * 120.74583 * 359.73814 * 16 15 14 18 18 Cl 1.73597 * 120.43643 * 180.28715 * 17 16 15 19 19 C 1.53194 * 109.30831 * 298.63536 * 6 5 4 20 20 N 1.46919 * 109.58776 * 120.27704 * 2 1 3 21 21 C 1.36943 * 120.63048 * 353.42106 * 20 2 1 22 22 H 1.07996 * 120.00103 * 29.00552 * 21 20 2 23 23 C 1.38814 * 119.99834 * 209.00438 * 21 20 2 24 24 N 1.31617 * 120.00207 * 15.01697 * 23 21 20 25 25 Si 1.86801 * 119.99769 * 195.01772 * 23 21 20 26 26 H 1.48504 * 109.47352 * 59.99832 * 25 23 21 27 27 H 1.48501 * 109.46926 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46944 * 299.99963 * 25 23 21 29 29 H 1.09000 * 109.47159 * 299.72324 * 1 2 3 30 30 H 1.08997 * 109.47249 * 59.71866 * 1 2 3 31 31 H 1.08999 * 109.47500 * 179.72148 * 1 2 3 32 32 H 1.09001 * 109.49358 * 305.52593 * 4 2 1 33 33 H 1.08999 * 109.49959 * 65.62272 * 4 2 1 34 34 H 1.08997 * 109.45527 * 301.34272 * 5 4 2 35 35 H 1.08996 * 109.45970 * 181.37810 * 5 4 2 36 36 H 0.96993 * 120.00142 * 335.16118 * 8 6 5 37 37 H 1.09004 * 109.46591 * 300.27271 * 11 9 8 38 38 H 1.09000 * 109.47107 * 60.27240 * 11 9 8 39 39 H 1.08002 * 120.41056 * 359.95874 * 13 12 11 40 40 H 1.08003 * 119.60079 * 180.02562 * 14 13 12 41 41 H 1.07998 * 119.62699 * 180.02562 * 16 15 14 42 42 H 1.09006 * 109.58154 * 174.42535 * 19 6 5 43 43 H 1.09003 * 109.58782 * 294.84475 * 19 6 5 44 44 H 0.97005 * 119.99997 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2445 5 6 3.5675 -0.8494 -1.1690 6 6 3.9570 -1.6656 0.0657 7 1 5.0411 -1.7699 0.1063 8 7 3.3405 -2.9924 -0.0108 9 6 3.8952 -4.0318 0.6436 10 8 4.9049 -3.8689 1.2955 11 6 3.2578 -5.3954 0.5699 12 6 4.0638 -6.3716 1.3875 13 6 3.6614 -6.7295 2.6652 14 6 4.4256 -7.6280 3.3852 15 7 5.5255 -8.1429 2.8711 16 6 5.9392 -7.8264 1.6599 17 6 5.2230 -6.9381 0.8775 18 17 5.7711 -6.5327 -0.7190 19 6 3.4650 -0.9451 1.3250 20 7 2.0225 -0.6979 1.1954 21 6 1.1536 -1.1106 2.1700 22 1 0.1360 -1.3656 1.9135 23 6 1.5808 -1.2011 3.4877 24 7 2.7038 -0.6224 3.8567 25 14 0.5618 -2.1445 4.7371 26 1 0.4325 -3.5590 4.3038 27 1 1.2306 -2.0923 6.0620 28 1 -0.7875 -1.5326 4.8386 29 1 -0.3633 0.5095 0.8924 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3634 -1.0276 -0.0050 32 1 1.6030 -1.7269 -1.2890 33 1 1.7660 -0.1696 -2.1366 34 1 4.0061 0.1460 -1.0995 35 1 3.9378 -1.3475 -2.0650 36 1 2.5332 -3.1227 -0.5324 37 1 2.2424 -5.3435 0.9630 38 1 3.2290 -5.7275 -0.4679 39 1 2.7621 -6.3110 3.0925 40 1 4.1183 -7.9119 4.3809 41 1 6.8449 -8.2690 1.2725 42 1 3.6519 -1.5688 2.1992 43 1 3.9903 0.0040 1.4317 44 1 3.0021 -0.6854 4.7776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071821146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:30 Heat of formation + Delta-G solvation = -9.745564 kcal Electronic energy + Delta-G solvation = -27966.786368 eV Core-core repulsion = 24137.474626 eV Total energy + Delta-G solvation = -3829.311742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.56188 -40.69940 -39.10963 -37.65788 -35.75536 -34.89313 -34.47711 -32.30818 -32.06178 -31.70853 -29.51960 -27.75812 -26.67067 -24.60166 -24.05424 -23.76929 -22.16167 -21.64672 -20.33676 -18.41229 -18.20015 -17.92799 -17.74974 -17.17586 -16.95464 -16.37439 -15.95985 -15.72728 -15.46439 -15.26117 -14.99795 -14.86304 -14.54531 -14.44962 -14.14835 -13.83887 -13.58394 -13.45379 -13.02697 -12.94401 -12.85109 -12.62846 -12.57427 -12.51211 -12.39080 -12.26389 -12.09747 -12.06687 -11.55920 -11.19850 -11.07576 -10.99711 -10.65953 -10.54527 -10.45070 -9.96873 -9.88181 -8.54604 -7.78266 -5.24037 -0.10642 0.02743 0.99097 1.45026 1.45590 1.53031 1.79026 2.33881 2.53764 2.71252 3.36137 3.37484 3.42833 3.62625 3.66097 3.88267 3.94306 4.07877 4.12767 4.20624 4.21770 4.37024 4.50743 4.52582 4.60230 4.67207 4.74036 4.77907 4.85029 4.98979 5.06389 5.06841 5.12532 5.14058 5.29203 5.35017 5.47385 5.58990 5.64575 5.73306 5.78290 5.79039 6.47145 6.74106 6.77011 7.21799 7.44397 7.96337 8.47651 9.26745 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.004628 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.332840 B = 6048.463323 C = 7736.195663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.008 0.992 4 C -0.117 4.117 5 C -0.111 4.111 6 C 0.131 3.869 7 H 0.059 0.941 8 N -0.691 5.691 9 C 0.515 3.485 10 O -0.583 6.583 11 C -0.104 4.104 12 C -0.021 4.021 13 C -0.159 4.159 14 C 0.097 3.903 15 N -0.490 5.490 16 C 0.105 3.895 17 C -0.083 4.083 18 Cl -0.048 7.048 19 C 0.173 3.827 20 N -0.593 5.593 21 C -0.236 4.236 22 H 0.079 0.921 23 C -0.056 4.056 24 N -0.939 5.939 25 Si 0.950 3.050 26 H -0.270 1.270 27 H -0.308 1.308 28 H -0.275 1.275 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.408 0.592 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.188 0.812 41 H 0.183 0.817 42 H 0.050 0.950 43 H -0.012 1.012 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -11.879 -12.888 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.026 0.974 4 C -0.156 4.156 5 C -0.149 4.149 6 C 0.025 3.975 7 H 0.077 0.923 8 N -0.342 5.342 9 C 0.302 3.698 10 O -0.463 6.463 11 C -0.143 4.143 12 C -0.030 4.030 13 C -0.179 4.179 14 C -0.059 4.059 15 N -0.199 5.199 16 C -0.053 4.053 17 C -0.112 4.112 18 Cl -0.020 7.020 19 C 0.046 3.954 20 N -0.317 5.317 21 C -0.366 4.366 22 H 0.097 0.903 23 C -0.251 4.251 24 N -0.587 5.587 25 Si 0.780 3.220 26 H -0.195 1.195 27 H -0.235 1.235 28 H -0.201 1.201 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.245 0.755 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.205 0.795 41 H 0.200 0.800 42 H 0.069 0.931 43 H 0.006 0.994 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.463 -12.284 -11.941 17.137 hybrid contribution -0.833 0.738 0.689 1.309 sum -0.370 -11.545 -11.252 16.126 Atomic orbital electron populations 1.21721 0.94603 1.01532 1.00676 1.20766 0.94215 0.93034 0.87204 0.97391 1.21942 0.94523 1.01237 0.97927 1.21656 0.97442 0.99698 0.96072 1.21401 0.96029 0.82712 0.97399 0.92257 1.45675 1.29825 1.07718 1.50966 1.20598 0.84067 0.86703 0.78444 1.90699 1.27354 1.85771 1.42445 1.20771 1.00547 0.89641 1.03364 1.19863 0.93702 0.94431 0.94982 1.22346 1.02891 0.99072 0.93570 1.23263 0.89514 0.92293 1.00783 1.67838 1.15077 1.25007 1.11986 1.23066 0.99258 0.93774 0.89167 1.22026 0.97377 1.01634 0.90121 1.98358 1.88995 1.93044 1.21569 1.20838 0.84143 0.95009 0.95409 1.44255 1.02164 1.65513 1.19787 1.19405 0.95059 1.35764 0.86381 0.90349 1.25773 0.98821 1.01467 0.99018 1.70176 1.25362 1.46856 1.16263 0.85587 0.78326 0.79817 0.78313 1.19548 1.23528 1.20131 0.94801 0.90794 0.92584 0.91357 0.89404 0.91411 0.89717 0.75482 0.85510 0.84895 0.82943 0.79499 0.80010 0.93116 0.99359 0.95029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.94 71.98 0.57 -3.52 16 2 C 0.15 5.54 3.50 44.98 0.16 5.70 16 3 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 4 C -0.12 -3.10 5.21 30.67 0.16 -2.94 16 5 C -0.11 -3.08 5.59 30.62 0.17 -2.91 16 6 C 0.13 4.81 2.81 45.07 0.13 4.93 16 7 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 8 N -0.69 -22.23 4.92 -442.14 -2.17 -24.40 16 9 C 0.52 17.81 7.69 87.66 0.67 18.48 16 10 O -0.58 -25.74 15.64 -3.04 -0.05 -25.78 16 11 C -0.10 -2.63 5.35 29.10 0.16 -2.47 16 12 C -0.02 -0.57 4.45 -19.65 -0.09 -0.66 16 13 C -0.16 -4.17 9.78 22.36 0.22 -3.95 16 14 C 0.10 2.40 11.18 84.67 0.95 3.35 16 15 N -0.49 -13.14 10.36 -195.75 -2.03 -15.16 16 16 C 0.10 2.65 10.99 84.72 0.93 3.58 16 17 C -0.08 -2.19 6.26 22.42 0.14 -2.05 16 18 Cl -0.05 -1.16 27.60 -2.72 -0.08 -1.24 16 19 C 0.17 8.35 4.89 86.36 0.42 8.77 16 20 N -0.59 -27.25 2.91 -675.23 -1.96 -29.21 16 21 C -0.24 -11.95 8.60 84.03 0.72 -11.23 16 22 H 0.08 3.76 6.21 -2.91 -0.02 3.74 16 23 C -0.06 -3.09 4.96 84.86 0.42 -2.67 16 24 N -0.94 -56.96 11.14 21.65 0.24 -56.72 16 25 Si 0.95 44.17 29.58 68.60 2.03 46.20 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 29 H 0.03 1.25 7.62 -2.39 -0.02 1.23 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.74 7.44 -2.39 -0.02 1.72 16 32 H 0.07 1.67 6.40 -2.39 -0.02 1.65 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.41 10.74 6.77 -92.71 -0.63 10.12 16 37 H 0.13 2.80 8.04 -2.38 -0.02 2.78 16 38 H 0.13 2.57 7.45 -2.39 -0.02 2.56 16 39 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.19 3.42 8.06 -2.91 -0.02 3.39 16 41 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.05 2.94 6.06 -2.38 -0.01 2.93 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.24 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -72.42 367.56 2.11 -70.31 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.40 Total: 23.60 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 5.73 Total: 12.41 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -5.92 Total: -125.50 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -72.42 2.11 -70.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071821146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.564 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds