Wall clock time and date at job start Tue Mar 31 2020 21:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47373 * 2 1 4 4 C 1.35627 * 125.68073 * 265.36128 * 3 2 1 5 5 C 1.35519 * 108.85422 * 180.24174 * 4 3 2 6 6 Cl 1.73601 * 126.07507 * 179.78568 * 5 4 3 7 7 C 1.39888 * 107.84899 * 359.75254 * 5 4 3 8 8 C 1.37640 * 125.67129 * 85.17111 * 3 2 1 9 9 C 1.46670 * 126.22700 * 0.02809 * 8 3 2 10 10 O 1.21694 * 119.99379 * 353.84224 * 9 8 3 11 11 N 1.34770 * 120.00063 * 173.84044 * 9 8 3 12 12 C 1.47853 * 134.36323 * 174.76445 * 11 9 8 13 13 C 1.52565 * 85.66137 * 156.37607 * 12 11 9 14 14 C 1.47855 * 134.36702 * 354.76782 * 11 9 8 15 15 C 1.53926 * 115.92089 * 264.97438 * 13 12 11 16 16 C 1.55154 * 101.43044 * 264.39946 * 15 13 12 17 17 N 1.47540 * 105.01343 * 324.38138 * 16 15 13 18 18 C 1.36937 * 125.65991 * 203.92356 * 17 16 15 19 19 H 1.08004 * 120.00181 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99866 * 359.97438 * 18 17 16 21 21 N 1.31618 * 120.00271 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00077 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46927 * 60.00081 * 22 20 18 24 24 H 1.48493 * 109.47381 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47023 * 300.00490 * 22 20 18 26 26 C 1.47369 * 108.68208 * 23.91504 * 17 16 15 27 27 H 1.08998 * 109.47238 * 303.91132 * 1 2 3 28 28 H 1.09002 * 109.46860 * 63.90845 * 1 2 3 29 29 H 1.08999 * 109.47086 * 183.90845 * 1 2 3 30 30 H 1.09002 * 109.47197 * 240.00138 * 2 1 3 31 31 H 1.08999 * 109.47232 * 120.00184 * 2 1 3 32 32 H 1.08002 * 125.57545 * 359.97438 * 4 3 2 33 33 H 1.08002 * 126.45057 * 180.02562 * 7 5 4 34 34 H 1.08993 * 113.84197 * 42.18482 * 12 11 9 35 35 H 1.09008 * 113.95621 * 270.57305 * 12 11 9 36 36 H 1.08995 * 113.84244 * 89.43546 * 14 11 9 37 37 H 1.09002 * 113.84001 * 317.81291 * 14 11 9 38 38 H 1.08997 * 111.00579 * 146.36835 * 15 13 12 39 39 H 1.08992 * 111.04105 * 22.44583 * 15 13 12 40 40 H 1.09007 * 110.32908 * 205.49412 * 16 15 13 41 41 H 1.08998 * 110.42094 * 83.31374 * 16 15 13 42 42 H 0.96999 * 120.00500 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.98045 * 117.31330 * 26 17 16 44 44 H 1.09000 * 109.98330 * 238.57812 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3661 2.0973 -1.0981 5 6 2.7737 3.3290 -0.7066 6 17 3.3221 4.6038 -1.7497 7 6 2.6733 3.3910 0.6873 8 6 2.1972 2.1693 1.1142 9 6 1.9352 1.7786 2.5034 10 8 1.4144 0.7058 2.7457 11 7 2.2712 2.6076 3.5114 12 6 2.0732 2.5871 4.9765 13 6 3.2860 3.5108 5.0368 14 6 2.9847 3.9001 3.5928 15 6 4.6424 2.8253 5.2812 16 6 4.7895 2.9742 6.8185 17 7 4.1931 4.2861 7.1344 18 6 4.4825 5.0511 8.2327 19 1 3.9897 6.0017 8.3738 20 6 5.4092 4.6046 9.1647 21 7 6.0102 3.4464 8.9926 22 14 5.8035 5.6477 10.6633 23 1 4.5674 5.8583 11.4590 24 1 6.8171 4.9532 11.4971 25 1 6.3397 6.9613 10.2250 26 6 3.2343 4.6369 6.0716 27 1 -0.3633 0.5733 0.8528 28 1 -0.3633 0.4520 -0.9230 29 1 -0.3633 -1.0253 0.0700 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3287 1.7424 -2.1174 33 1 2.9215 4.2367 1.3115 34 1 2.2404 1.6102 5.4300 35 1 1.1454 3.0561 5.3043 36 1 2.3341 4.7693 3.4974 37 1 3.8690 3.9559 2.9579 38 1 5.4439 3.3478 4.7590 39 1 4.6080 1.7753 4.9912 40 1 5.8421 2.9586 7.1015 41 1 4.2485 2.1788 7.3311 42 1 6.6575 3.1342 9.6440 43 1 2.2297 4.7150 6.4872 44 1 3.5203 5.5814 5.6088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073435332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:26 Heat of formation + Delta-G solvation = 77.682101 kcal Electronic energy + Delta-G solvation = -26985.044123 eV Core-core repulsion = 23159.523529 eV Total energy + Delta-G solvation = -3825.520594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.77122 -40.36303 -38.02507 -36.59831 -35.68283 -34.30749 -32.24352 -30.42714 -29.50016 -29.12936 -28.36588 -26.23179 -25.75767 -24.00702 -23.64429 -21.93938 -20.86869 -20.31794 -19.10811 -18.43815 -17.53353 -16.83262 -16.22478 -15.95121 -15.61786 -15.18129 -14.88400 -14.70880 -14.41745 -14.25444 -13.77545 -13.64356 -13.36519 -13.18045 -12.97174 -12.88305 -12.50987 -12.37875 -12.14998 -11.93533 -11.69880 -11.63111 -11.51056 -11.19347 -11.03152 -10.97985 -10.77460 -10.47124 -10.14957 -10.03584 -9.88161 -9.80557 -9.55461 -8.92035 -8.71864 -8.65503 -8.37878 -6.86170 -5.66595 -3.08542 1.23317 1.88954 2.23486 2.46679 3.07122 3.25209 3.40167 3.44575 3.45823 4.27867 4.40443 4.46169 4.60124 4.61638 4.73330 4.94811 4.97732 5.00084 5.16530 5.26665 5.37425 5.43521 5.47013 5.51452 5.53106 5.62028 5.64293 5.82436 5.84312 5.85154 5.85680 6.12702 6.26035 6.28550 6.48454 6.55451 6.56865 6.66887 6.72063 6.80452 7.49003 7.60165 7.68828 7.83836 8.10475 8.33885 9.20039 9.80834 10.45328 11.37292 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.002625 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.881327 B =10664.719799 C =11719.367696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.401 5.401 4 C 0.029 3.971 5 C -0.123 4.123 6 Cl -0.052 7.052 7 C -0.131 4.131 8 C -0.025 4.025 9 C 0.607 3.393 10 O -0.551 6.551 11 N -0.626 5.626 12 C 0.132 3.868 13 C -0.102 4.102 14 C 0.110 3.890 15 C -0.119 4.119 16 C 0.154 3.846 17 N -0.604 5.604 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.152 3.848 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.176 0.824 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.013 0.987 42 H 0.253 0.747 43 H 0.027 0.973 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 -3.635 -21.740 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.075 5.075 4 C -0.107 4.107 5 C -0.156 4.156 6 Cl -0.023 7.023 7 C -0.157 4.157 8 C -0.139 4.139 9 C 0.397 3.603 10 O -0.432 6.432 11 N -0.360 5.360 12 C 0.011 3.989 13 C -0.103 4.103 14 C -0.012 4.012 15 C -0.158 4.158 16 C 0.029 3.971 17 N -0.330 5.330 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.025 3.975 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.193 0.807 33 H 0.174 0.826 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.031 0.969 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.601 -4.629 -21.616 23.720 hybrid contribution 0.156 0.703 0.501 0.877 sum -8.445 -3.926 -21.115 23.078 Atomic orbital electron populations 1.22070 0.93693 1.03385 1.02858 1.22093 0.96262 0.78742 1.05071 1.44033 1.46788 1.11890 1.04744 1.21671 1.05317 0.91514 0.92241 1.19915 1.12688 0.91422 0.91558 1.98325 1.88730 1.49469 1.65816 1.21473 1.03795 0.97239 0.93241 1.20034 1.13432 0.92280 0.88137 1.16449 0.77971 0.83560 0.82299 1.90789 1.45459 1.22381 1.84556 1.49783 1.56435 1.22291 1.07478 1.23121 0.97977 1.00815 0.77032 1.22481 0.96629 0.97345 0.93848 1.23336 0.95791 0.85699 0.96403 1.22718 0.93262 0.98543 1.01260 1.21978 1.02091 0.86111 0.86893 1.44568 1.45686 1.19774 1.22954 1.19021 1.18894 0.99993 0.97291 0.90471 1.24784 0.99440 0.97264 0.99090 1.69781 1.31099 1.19837 1.36344 0.86155 0.77734 0.79225 0.82379 1.21226 1.21610 1.21150 1.20986 0.93847 0.93909 0.88735 0.91187 0.92395 0.90528 0.89112 0.87468 0.80702 0.82620 0.89648 0.89388 0.89185 0.89407 0.91461 0.92210 0.87572 0.96906 0.93652 0.95563 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.14 37.16 0.38 -0.97 16 2 C 0.10 0.87 6.09 -4.04 -0.02 0.85 16 3 N -0.40 -4.34 2.76 -112.83 -0.31 -4.65 16 4 C 0.03 0.28 11.35 -16.85 -0.19 0.09 16 5 C -0.12 -1.33 6.66 -39.94 -0.27 -1.59 16 6 Cl -0.05 -0.52 29.30 -51.86 -1.52 -2.04 16 7 C -0.13 -1.55 9.86 -39.09 -0.39 -1.93 16 8 C -0.03 -0.32 6.88 -81.98 -0.56 -0.89 16 9 C 0.61 9.09 8.00 -12.86 -0.10 8.98 16 10 O -0.55 -9.42 15.04 5.19 0.08 -9.35 16 11 N -0.63 -8.90 3.62 -187.21 -0.68 -9.57 16 12 C 0.13 1.97 8.08 -3.52 -0.03 1.94 16 13 C -0.10 -1.61 0.98 -154.68 -0.15 -1.76 16 14 C 0.11 1.39 5.97 -3.53 -0.02 1.37 16 15 C -0.12 -2.15 6.42 -25.11 -0.16 -2.31 16 16 C 0.15 3.59 5.90 -2.33 -0.01 3.58 16 17 N -0.60 -14.71 3.41 -170.34 -0.58 -15.29 16 18 C -0.22 -6.03 10.28 -15.06 -0.15 -6.18 16 19 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -26.36 10.09 55.49 0.56 -25.80 16 22 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.15 2.87 6.75 -3.56 -0.02 2.85 16 27 H 0.07 0.78 7.66 -51.93 -0.40 0.38 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.11 1.15 6.75 -51.93 -0.35 0.80 16 32 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.16 1.68 5.56 -52.49 -0.29 1.38 16 34 H 0.09 1.37 8.12 -51.93 -0.42 0.95 16 35 H 0.09 1.20 8.00 -51.92 -0.42 0.78 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.03 7.05 -51.93 -0.37 0.66 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 40 H 0.11 2.82 5.89 -51.93 -0.31 2.51 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.03 0.49 7.86 -51.93 -0.41 0.08 16 44 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -31.24 370.00 -10.00 -41.24 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.30 Total: -0.38 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.81 Total: 3.63 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -1.01 Total: -55.32 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.24 -10.00 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073435332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.924 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds