Wall clock time and date at job start Tue Mar 31 2020 21:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47373 * 2 1 4 4 C 1.35627 * 125.68073 * 265.36128 * 3 2 1 5 5 C 1.35519 * 108.85422 * 180.24174 * 4 3 2 6 6 Cl 1.73601 * 126.07507 * 179.78568 * 5 4 3 7 7 C 1.39888 * 107.84899 * 359.75254 * 5 4 3 8 8 C 1.37640 * 125.67129 * 85.17111 * 3 2 1 9 9 C 1.46670 * 126.22700 * 0.02809 * 8 3 2 10 10 O 1.21694 * 119.99379 * 353.84224 * 9 8 3 11 11 N 1.34770 * 120.00063 * 173.84044 * 9 8 3 12 12 C 1.47853 * 134.36323 * 174.76445 * 11 9 8 13 13 C 1.52565 * 85.66137 * 156.37607 * 12 11 9 14 14 C 1.47855 * 134.36702 * 354.76782 * 11 9 8 15 15 C 1.53926 * 115.92089 * 264.97438 * 13 12 11 16 16 C 1.55154 * 101.43044 * 264.39946 * 15 13 12 17 17 N 1.47540 * 105.01343 * 324.38138 * 16 15 13 18 18 C 1.36937 * 125.65991 * 203.92356 * 17 16 15 19 19 H 1.08004 * 120.00181 * 179.97438 * 18 17 16 20 20 C 1.38809 * 119.99866 * 359.97438 * 18 17 16 21 21 N 1.31618 * 120.00271 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00077 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46927 * 60.00081 * 22 20 18 24 24 H 1.48493 * 109.47381 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47023 * 300.00490 * 22 20 18 26 26 C 1.47369 * 108.68208 * 23.91504 * 17 16 15 27 27 H 1.08998 * 109.47238 * 303.91132 * 1 2 3 28 28 H 1.09002 * 109.46860 * 63.90845 * 1 2 3 29 29 H 1.08999 * 109.47086 * 183.90845 * 1 2 3 30 30 H 1.09002 * 109.47197 * 240.00138 * 2 1 3 31 31 H 1.08999 * 109.47232 * 120.00184 * 2 1 3 32 32 H 1.08002 * 125.57545 * 359.97438 * 4 3 2 33 33 H 1.08002 * 126.45057 * 180.02562 * 7 5 4 34 34 H 1.08993 * 113.84197 * 42.18482 * 12 11 9 35 35 H 1.09008 * 113.95621 * 270.57305 * 12 11 9 36 36 H 1.08995 * 113.84244 * 89.43546 * 14 11 9 37 37 H 1.09002 * 113.84001 * 317.81291 * 14 11 9 38 38 H 1.08997 * 111.00579 * 146.36835 * 15 13 12 39 39 H 1.08992 * 111.04105 * 22.44583 * 15 13 12 40 40 H 1.09007 * 110.32908 * 205.49412 * 16 15 13 41 41 H 1.08998 * 110.42094 * 83.31374 * 16 15 13 42 42 H 0.96999 * 120.00500 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.98045 * 117.31330 * 26 17 16 44 44 H 1.09000 * 109.98330 * 238.57812 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3661 2.0973 -1.0981 5 6 2.7737 3.3290 -0.7066 6 17 3.3221 4.6038 -1.7497 7 6 2.6733 3.3910 0.6873 8 6 2.1972 2.1693 1.1142 9 6 1.9352 1.7786 2.5034 10 8 1.4144 0.7058 2.7457 11 7 2.2712 2.6076 3.5114 12 6 2.0732 2.5871 4.9765 13 6 3.2860 3.5108 5.0368 14 6 2.9847 3.9001 3.5928 15 6 4.6424 2.8253 5.2812 16 6 4.7895 2.9742 6.8185 17 7 4.1931 4.2861 7.1344 18 6 4.4825 5.0511 8.2327 19 1 3.9897 6.0017 8.3738 20 6 5.4092 4.6046 9.1647 21 7 6.0102 3.4464 8.9926 22 14 5.8035 5.6477 10.6633 23 1 4.5674 5.8583 11.4590 24 1 6.8171 4.9532 11.4971 25 1 6.3397 6.9613 10.2250 26 6 3.2343 4.6369 6.0716 27 1 -0.3633 0.5733 0.8528 28 1 -0.3633 0.4520 -0.9230 29 1 -0.3633 -1.0253 0.0700 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3287 1.7424 -2.1174 33 1 2.9215 4.2367 1.3115 34 1 2.2404 1.6102 5.4300 35 1 1.1454 3.0561 5.3043 36 1 2.3341 4.7693 3.4974 37 1 3.8690 3.9559 2.9579 38 1 5.4439 3.3478 4.7590 39 1 4.6080 1.7753 4.9912 40 1 5.8421 2.9586 7.1015 41 1 4.2485 2.1788 7.3311 42 1 6.6575 3.1342 9.6440 43 1 2.2297 4.7150 6.4872 44 1 3.5203 5.5814 5.6088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073435332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:23 Heat of formation + Delta-G solvation = 60.284953 kcal Electronic energy + Delta-G solvation = -26985.798520 eV Core-core repulsion = 23159.523529 eV Total energy + Delta-G solvation = -3826.274991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.63884 -41.55400 -39.26000 -37.40619 -37.22528 -35.07603 -34.04457 -31.69879 -30.70256 -30.24195 -29.65901 -27.38267 -27.31221 -25.50693 -24.54559 -22.95461 -22.17919 -21.62988 -20.08251 -19.79566 -18.67680 -18.44961 -17.40950 -17.07454 -16.76704 -16.53429 -16.15048 -15.76322 -15.56860 -15.43117 -15.16235 -14.79229 -14.33384 -14.17023 -14.04712 -13.88420 -13.66402 -13.65191 -13.45830 -13.34363 -13.00573 -12.84645 -12.74178 -12.46573 -12.38148 -12.18779 -12.04922 -11.93141 -11.79133 -11.74377 -11.51145 -11.30162 -10.93366 -10.69214 -9.83537 -9.73249 -9.22744 -8.83986 -7.73005 -5.16645 0.32790 1.11802 1.43741 1.49906 1.51745 1.52782 1.58940 2.17674 2.22101 2.53555 3.26183 3.32302 3.45211 3.64533 3.74450 3.77297 3.96047 4.07425 4.08088 4.19174 4.21601 4.33808 4.38543 4.48839 4.51442 4.58856 4.63780 4.71000 4.76241 4.84980 4.86797 4.90977 4.95537 5.08526 5.16889 5.19474 5.23640 5.43712 5.51802 5.64652 5.73318 5.85369 6.06786 6.34188 6.58633 6.99890 7.14702 7.82927 8.46833 9.29020 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.002625 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.881327 B =10664.719799 C =11719.367696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.096 3.904 3 N -0.404 5.404 4 C 0.051 3.949 5 C -0.141 4.141 6 Cl -0.046 7.046 7 C -0.127 4.127 8 C -0.056 4.056 9 C 0.603 3.397 10 O -0.583 6.583 11 N -0.628 5.628 12 C 0.130 3.870 13 C -0.095 4.095 14 C 0.126 3.874 15 C -0.103 4.103 16 C 0.158 3.842 17 N -0.626 5.626 18 C -0.233 4.233 19 H 0.085 0.915 20 C -0.069 4.069 21 N -0.952 5.952 22 Si 0.978 3.022 23 H -0.280 1.280 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.149 3.851 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.212 0.788 33 H 0.164 0.836 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.070 0.930 41 H -0.018 1.018 42 H 0.245 0.755 43 H 0.034 0.966 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -2.488 -24.541 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 N -0.077 5.077 4 C -0.087 4.087 5 C -0.174 4.174 6 Cl -0.017 7.017 7 C -0.153 4.153 8 C -0.169 4.169 9 C 0.395 3.605 10 O -0.466 6.466 11 N -0.361 5.361 12 C 0.008 3.992 13 C -0.097 4.097 14 C 0.004 3.996 15 C -0.141 4.141 16 C 0.033 3.967 17 N -0.352 5.352 18 C -0.363 4.363 19 H 0.103 0.897 20 C -0.262 4.262 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.206 1.206 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.024 3.976 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.101 0.899 32 H 0.228 0.772 33 H 0.181 0.819 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.000 1.000 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.417 -3.452 -24.438 26.416 hybrid contribution 0.368 0.337 1.309 1.401 sum -9.049 -3.115 -23.129 25.031 Atomic orbital electron populations 1.22014 0.93412 1.03833 1.02068 1.22230 0.96464 0.78008 1.05691 1.44244 1.46463 1.12417 1.04536 1.22262 1.02548 0.90723 0.93174 1.20030 1.13699 0.92291 0.91384 1.98328 1.88710 1.49276 1.65429 1.21626 1.02791 0.96907 0.94012 1.19793 1.16020 0.93444 0.87639 1.16772 0.77437 0.83060 0.83245 1.90767 1.46979 1.23684 1.85154 1.49743 1.56537 1.22880 1.06921 1.23098 0.98282 0.99827 0.77947 1.22315 0.95490 0.96414 0.95457 1.23404 0.96724 0.85882 0.93555 1.22469 0.95165 0.99378 0.97084 1.21692 0.99324 0.85320 0.90339 1.44864 1.46990 1.19730 1.23637 1.19444 1.18336 1.00413 0.98058 0.89685 1.25609 0.99964 0.98543 1.02052 1.70052 1.31747 1.21444 1.36921 0.85152 0.77283 0.77856 0.79044 1.20572 1.22412 1.20120 1.21169 0.92812 0.95526 0.88097 0.94493 0.90844 0.89155 0.85410 0.89887 0.77175 0.81882 0.91486 0.87804 0.86261 0.87942 0.90634 0.91689 0.91181 0.99969 0.94531 0.94826 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.14 71.98 0.73 -1.62 16 2 C 0.10 1.51 6.09 86.38 0.53 2.04 16 3 N -0.40 -7.82 2.76 -510.87 -1.41 -9.23 16 4 C 0.05 0.78 11.35 83.48 0.95 1.73 16 5 C -0.14 -2.65 6.66 22.04 0.15 -2.50 16 6 Cl -0.05 -0.79 29.30 -2.72 -0.08 -0.87 16 7 C -0.13 -2.68 9.86 22.59 0.22 -2.46 16 8 C -0.06 -1.35 6.88 40.35 0.28 -1.08 16 9 C 0.60 17.71 8.00 86.45 0.69 18.40 16 10 O -0.58 -20.24 15.04 -4.33 -0.07 -20.31 16 11 N -0.63 -17.06 3.62 -864.43 -3.13 -20.18 16 12 C 0.13 3.82 8.08 85.97 0.69 4.51 16 13 C -0.10 -2.90 0.98 -52.08 -0.05 -2.95 16 14 C 0.13 2.83 5.97 85.97 0.51 3.34 16 15 C -0.10 -3.69 6.42 31.65 0.20 -3.49 16 16 C 0.16 7.68 5.90 86.92 0.51 8.19 16 17 N -0.63 -30.85 3.41 -692.85 -2.36 -33.21 16 18 C -0.23 -12.68 10.28 84.03 0.86 -11.82 16 19 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 20 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 21 N -0.95 -56.53 10.09 21.65 0.22 -56.31 16 22 Si 0.98 45.12 29.55 68.60 2.03 47.15 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.15 5.46 6.75 86.22 0.58 6.04 16 27 H 0.04 0.81 7.66 -2.39 -0.02 0.79 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.13 1.04 8.12 -2.39 -0.02 1.02 16 31 H 0.08 1.75 6.75 -2.39 -0.02 1.73 16 32 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.16 3.03 5.56 -2.91 -0.02 3.01 16 34 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 35 H 0.10 2.71 8.00 -2.38 -0.02 2.69 16 36 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.10 2.07 7.05 -2.39 -0.02 2.05 16 38 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.06 2.27 8.06 -2.39 -0.02 2.25 16 40 H 0.07 3.92 5.89 -2.38 -0.01 3.91 16 41 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.03 1.20 7.86 -2.39 -0.02 1.18 16 44 H 0.05 1.60 8.09 -2.39 -0.02 1.58 16 Total: -1.00 -70.68 370.00 3.54 -67.14 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.01 Total: 10.91 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 7.33 Total: 14.92 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -6.68 Total: -118.94 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.07 Total: -20.31 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -70.68 3.54 -67.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073435332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.422 kcal (2) G-P(sol) polarization free energy of solvation -70.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds