Wall clock time and date at job start Tue Mar 31 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42903 * 109.47156 * 2 1 4 4 C 1.35351 * 117.00156 * 180.02562 * 3 2 1 5 5 N 1.30552 * 125.44803 * 180.02562 * 4 3 2 6 6 C 1.36325 * 108.38716 * 180.02562 * 5 4 3 7 7 C 1.47361 * 126.41730 * 179.97438 * 6 5 4 8 8 O 1.21618 * 120.00201 * 175.06303 * 7 6 5 9 9 N 1.34780 * 119.99706 * 355.06340 * 7 6 5 10 10 C 1.44954 * 117.33931 * 356.63364 * 9 7 6 11 11 C 1.51960 * 111.94137 * 203.73166 * 10 9 7 12 12 O 1.41321 * 111.60441 * 319.69740 * 11 10 9 13 13 C 1.40849 * 118.30740 * 56.89774 * 12 11 10 14 14 H 1.09009 * 109.54438 * 187.73800 * 13 12 11 15 15 C 1.53928 * 110.46502 * 68.19009 * 13 12 11 16 16 N 1.46769 * 107.61954 * 221.67743 * 15 13 12 17 17 C 1.36938 * 125.36280 * 178.66150 * 16 15 13 18 18 H 1.07997 * 120.00051 * 198.31194 * 17 16 15 19 19 C 1.38818 * 119.99739 * 18.31001 * 17 16 15 20 20 N 1.31612 * 119.99757 * 219.57111 * 19 17 16 21 21 Si 1.86804 * 119.99747 * 39.57676 * 19 17 16 22 22 H 1.48493 * 109.47376 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46829 * 239.99408 * 21 19 17 24 24 H 1.48497 * 109.46947 * 119.99853 * 21 19 17 25 25 C 1.46870 * 109.27535 * 358.39288 * 16 15 13 26 26 C 1.44552 * 117.33625 * 176.61454 * 9 7 6 27 27 H 1.09003 * 109.64053 * 285.99064 * 26 9 7 28 28 C 1.35926 * 107.16971 * 0.22746 * 6 5 4 29 29 O 1.34205 * 125.44653 * 0.04515 * 4 3 2 30 30 H 1.08999 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47302 * 299.99509 * 1 2 3 32 32 H 1.09004 * 109.47528 * 59.99475 * 1 2 3 33 33 H 1.09003 * 109.47302 * 240.00491 * 2 1 3 34 34 H 1.08990 * 109.47374 * 120.00442 * 2 1 3 35 35 H 1.08998 * 108.98896 * 324.36669 * 10 9 7 36 36 H 1.09003 * 108.98872 * 83.17744 * 10 9 7 37 37 H 1.08999 * 109.05728 * 80.24713 * 11 10 9 38 38 H 1.09002 * 109.05589 * 199.22389 * 11 10 9 39 39 H 1.08997 * 109.95514 * 102.08020 * 15 13 12 40 40 H 1.08998 * 109.69427 * 341.12617 * 15 13 12 41 41 H 0.97001 * 120.00662 * 5.08243 * 20 19 17 42 42 H 1.09003 * 110.06585 * 137.29601 * 25 16 15 43 43 H 1.09001 * 110.07261 * 258.81741 * 25 16 15 44 44 H 1.08004 * 126.45056 * 179.74624 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9594 2.6783 -0.0001 6 6 5.3038 2.4525 -0.0015 7 6 6.3629 3.4771 -0.0021 8 8 7.5297 3.1458 0.0873 9 7 6.0385 4.7815 -0.1018 10 6 4.6374 5.1073 -0.2806 11 6 4.4494 6.4641 -0.9386 12 8 5.3675 7.4158 -0.4402 13 6 6.7435 7.1303 -0.5358 14 1 7.3112 7.8851 0.0084 15 6 7.1949 7.1439 -2.0074 16 7 8.1073 6.0109 -2.2026 17 6 8.7029 5.6680 -3.3871 18 1 9.1119 4.6772 -3.5189 19 6 8.7808 6.5940 -4.4184 20 7 8.5908 6.2103 -5.6629 21 14 9.1555 8.3844 -4.0396 22 1 9.3255 8.5554 -2.5744 23 1 8.0328 9.2352 -4.5099 24 1 10.4053 8.7861 -4.7337 25 6 8.2860 5.3067 -0.9262 26 6 7.1162 5.7416 -0.0213 27 1 7.4604 5.8203 1.0100 28 6 5.4845 1.1053 -0.0079 29 8 4.2630 0.5428 -0.0019 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8898 35 1 4.1724 4.3434 -0.9038 36 1 4.1482 5.1160 0.6934 37 1 4.5926 6.3609 -2.0142 38 1 3.4354 6.8151 -0.7469 39 1 7.7120 8.0774 -2.2292 40 1 6.3276 7.0366 -2.6587 41 1 8.3240 5.2975 -5.8538 42 1 8.2545 4.2289 -1.0861 43 1 9.2355 5.5903 -0.4722 44 1 6.4308 0.5849 -0.0144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083131165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:04 Heat of formation + Delta-G solvation = -10.553108 kcal Electronic energy + Delta-G solvation = -30638.588260 eV Core-core repulsion = 26368.532336 eV Total energy + Delta-G solvation = -4270.055924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.68231 -40.79954 -39.30830 -38.44957 -36.12609 -35.35366 -34.59517 -32.53802 -32.31136 -30.32581 -29.81075 -28.01689 -27.89157 -24.85640 -24.17524 -23.61940 -23.42745 -22.42363 -20.95200 -20.22063 -19.45911 -18.35887 -17.85407 -17.56669 -17.22445 -16.91848 -16.63087 -16.03292 -15.80223 -15.35256 -15.24998 -14.97167 -14.65295 -14.29836 -13.93471 -13.66824 -13.53828 -13.37996 -13.23304 -12.85556 -12.79990 -12.41914 -12.25957 -12.09572 -11.79809 -11.73532 -11.38985 -11.11755 -11.00840 -10.94931 -10.74492 -10.54765 -10.29395 -9.73104 -9.63102 -9.29411 -9.03204 -8.90043 -8.27040 -8.16936 -6.92533 -6.36546 -3.08705 0.95519 1.62337 1.87326 2.44708 2.95568 3.28966 3.53892 3.59495 3.73610 3.93964 4.17256 4.29539 4.30721 4.62130 4.65917 4.70566 4.74224 4.89768 5.05596 5.06603 5.17001 5.19429 5.20096 5.27513 5.40436 5.46446 5.49628 5.51503 5.56918 5.72562 5.81287 5.96121 6.01759 6.16218 6.40590 6.45586 6.65443 6.74074 6.79075 7.14558 7.25609 7.43746 7.65808 7.93538 8.23006 8.43512 9.06067 9.69076 10.38505 11.08369 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.003297 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.368390 B = 8491.357047 C = 8699.046261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.378 3.622 5 N -0.451 5.451 6 C -0.040 4.040 7 C 0.594 3.406 8 O -0.518 6.518 9 N -0.567 5.567 10 C 0.080 3.920 11 C 0.055 3.945 12 O -0.370 6.370 13 C 0.086 3.914 14 H 0.118 0.882 15 C 0.095 3.905 16 N -0.597 5.597 17 C -0.342 4.342 18 H 0.073 0.927 19 C 0.001 3.999 20 N -0.894 5.894 21 Si 1.025 2.975 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.297 1.297 25 C 0.104 3.896 26 C 0.110 3.890 27 H 0.079 0.921 28 C 0.004 3.996 29 O -0.227 6.227 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.267 0.733 42 H 0.091 0.909 43 H 0.029 0.971 44 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.164 -11.796 14.875 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.133 3.867 5 N -0.198 5.198 6 C -0.159 4.159 7 C 0.380 3.620 8 O -0.396 6.396 9 N -0.298 5.298 10 C -0.044 4.044 11 C -0.022 4.022 12 O -0.288 6.288 13 C 0.027 3.973 14 H 0.135 0.865 15 C -0.030 4.030 16 N -0.326 5.326 17 C -0.468 4.468 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.532 5.532 21 Si 0.855 3.145 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.225 1.225 25 C -0.021 4.021 26 C 0.006 3.994 27 H 0.097 0.903 28 C -0.068 4.068 29 O -0.118 6.118 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.047 0.953 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -15.860 -9.671 14.216 23.392 hybrid contribution 0.111 -2.437 0.518 2.494 sum -15.749 -12.109 14.734 24.734 Atomic orbital electron populations 1.21810 0.91224 1.03634 1.04242 1.23052 0.96854 0.79425 1.03061 1.86379 1.09042 1.30770 1.89190 1.23586 0.83420 0.81836 0.97856 1.71498 1.03971 1.20390 1.23942 1.21724 0.90126 0.94073 1.09968 1.16788 0.86079 0.81519 0.77573 1.90748 1.17621 1.81079 1.50108 1.46408 1.07770 1.05312 1.70318 1.22035 0.80768 0.98934 1.02617 1.22387 0.93408 0.87955 0.98480 1.86881 1.14830 1.44500 1.82545 1.22541 0.81962 0.95048 0.97708 0.86462 1.22117 0.94503 0.92955 0.93468 1.44515 1.51025 1.31524 1.05523 1.19760 1.39839 0.98451 0.88752 0.90974 1.25842 0.98337 1.03964 0.92144 1.70863 1.42337 1.19631 1.20329 0.84483 0.77011 0.78042 0.74929 1.20661 1.22095 1.22487 1.22222 0.92801 1.00701 0.86416 1.21745 0.88039 0.89365 1.00274 0.90294 1.24949 0.85768 0.92798 1.03326 1.84376 1.16268 1.39240 1.71897 0.89478 0.90974 0.90889 0.90758 0.90843 0.87158 0.91239 0.92538 0.87600 0.94348 0.94190 0.92321 0.89142 0.95311 0.74714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.28 37.15 0.38 -0.22 16 2 C 0.05 0.30 6.38 37.15 0.24 0.54 16 3 O -0.25 -2.44 10.19 -40.97 -0.42 -2.86 16 4 C 0.38 4.52 8.98 52.22 0.47 4.99 16 5 N -0.45 -6.34 7.77 -11.71 -0.09 -6.43 16 6 C -0.04 -0.60 6.53 -82.99 -0.54 -1.14 16 7 C 0.59 10.48 7.16 -12.55 -0.09 10.40 16 8 O -0.52 -10.15 13.74 5.26 0.07 -10.08 16 9 N -0.57 -10.03 3.09 -170.12 -0.53 -10.56 16 10 C 0.08 1.22 5.14 -5.40 -0.03 1.19 16 11 C 0.05 0.84 6.72 36.63 0.25 1.09 16 12 O -0.37 -6.43 10.24 -34.44 -0.35 -6.79 16 13 C 0.09 1.62 3.81 -26.39 -0.10 1.52 16 14 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 15 C 0.10 2.21 5.54 -3.41 -0.02 2.19 16 16 N -0.60 -15.49 3.16 -171.44 -0.54 -16.03 16 17 C -0.34 -10.13 10.20 -15.06 -0.15 -10.28 16 18 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 19 C 0.00 0.02 5.23 -17.43 -0.09 -0.07 16 20 N -0.89 -28.16 13.70 55.49 0.76 -27.39 16 21 Si 1.03 26.67 26.24 -169.99 -4.46 22.21 16 22 H -0.28 -6.89 6.17 56.52 0.35 -6.54 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 25 C 0.10 2.35 6.29 -3.23 -0.02 2.33 16 26 C 0.11 2.07 3.41 -68.51 -0.23 1.83 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 C 0.00 0.04 11.93 29.90 0.36 0.40 16 29 O -0.23 -2.46 10.20 -17.75 -0.18 -2.64 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.11 1.73 5.40 -51.93 -0.28 1.45 16 36 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 37 H 0.06 0.97 6.84 -51.93 -0.35 0.62 16 38 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.04 0.93 3.86 -51.93 -0.20 0.73 16 40 H 0.04 0.98 6.56 -51.93 -0.34 0.64 16 41 H 0.27 8.33 8.73 -40.82 -0.36 7.98 16 42 H 0.09 2.19 4.77 -52.61 -0.25 1.94 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.24 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -35.34 349.99 -5.75 -41.10 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.70 Total: -0.56 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 0.41 Total: 14.76 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.40 Total: -60.41 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.88 Total: -22.36 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -4.46 Total: 22.21 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.34 -5.75 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083131165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.545 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds