Wall clock time and date at job start Tue Mar 31 2020 22:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42903 * 109.47156 * 2 1 4 4 C 1.35351 * 117.00156 * 180.02562 * 3 2 1 5 5 N 1.30552 * 125.44803 * 180.02562 * 4 3 2 6 6 C 1.36325 * 108.38716 * 180.02562 * 5 4 3 7 7 C 1.47361 * 126.41730 * 179.97438 * 6 5 4 8 8 O 1.21618 * 120.00201 * 175.06303 * 7 6 5 9 9 N 1.34780 * 119.99706 * 355.06340 * 7 6 5 10 10 C 1.44954 * 117.33931 * 356.63364 * 9 7 6 11 11 C 1.51960 * 111.94137 * 203.73166 * 10 9 7 12 12 O 1.41321 * 111.60441 * 319.69740 * 11 10 9 13 13 C 1.40849 * 118.30740 * 56.89774 * 12 11 10 14 14 H 1.09009 * 109.54438 * 187.73800 * 13 12 11 15 15 C 1.53928 * 110.46502 * 68.19009 * 13 12 11 16 16 N 1.46769 * 107.61954 * 221.67743 * 15 13 12 17 17 C 1.36938 * 125.36280 * 178.66150 * 16 15 13 18 18 H 1.07997 * 120.00051 * 198.31194 * 17 16 15 19 19 C 1.38818 * 119.99739 * 18.31001 * 17 16 15 20 20 N 1.31612 * 119.99757 * 219.57111 * 19 17 16 21 21 Si 1.86804 * 119.99747 * 39.57676 * 19 17 16 22 22 H 1.48493 * 109.47376 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46829 * 239.99408 * 21 19 17 24 24 H 1.48497 * 109.46947 * 119.99853 * 21 19 17 25 25 C 1.46870 * 109.27535 * 358.39288 * 16 15 13 26 26 C 1.44552 * 117.33625 * 176.61454 * 9 7 6 27 27 H 1.09003 * 109.64053 * 285.99064 * 26 9 7 28 28 C 1.35926 * 107.16971 * 0.22746 * 6 5 4 29 29 O 1.34205 * 125.44653 * 0.04515 * 4 3 2 30 30 H 1.08999 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47302 * 299.99509 * 1 2 3 32 32 H 1.09004 * 109.47528 * 59.99475 * 1 2 3 33 33 H 1.09003 * 109.47302 * 240.00491 * 2 1 3 34 34 H 1.08990 * 109.47374 * 120.00442 * 2 1 3 35 35 H 1.08998 * 108.98896 * 324.36669 * 10 9 7 36 36 H 1.09003 * 108.98872 * 83.17744 * 10 9 7 37 37 H 1.08999 * 109.05728 * 80.24713 * 11 10 9 38 38 H 1.09002 * 109.05589 * 199.22389 * 11 10 9 39 39 H 1.08997 * 109.95514 * 102.08020 * 15 13 12 40 40 H 1.08998 * 109.69427 * 341.12617 * 15 13 12 41 41 H 0.97001 * 120.00662 * 5.08243 * 20 19 17 42 42 H 1.09003 * 110.06585 * 137.29601 * 25 16 15 43 43 H 1.09001 * 110.07261 * 258.81741 * 25 16 15 44 44 H 1.08004 * 126.45056 * 179.74624 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9594 2.6783 -0.0001 6 6 5.3038 2.4525 -0.0015 7 6 6.3629 3.4771 -0.0021 8 8 7.5297 3.1458 0.0873 9 7 6.0385 4.7815 -0.1018 10 6 4.6374 5.1073 -0.2806 11 6 4.4494 6.4641 -0.9386 12 8 5.3675 7.4158 -0.4402 13 6 6.7435 7.1303 -0.5358 14 1 7.3112 7.8851 0.0084 15 6 7.1949 7.1439 -2.0074 16 7 8.1073 6.0109 -2.2026 17 6 8.7029 5.6680 -3.3871 18 1 9.1119 4.6772 -3.5189 19 6 8.7808 6.5940 -4.4184 20 7 8.5908 6.2103 -5.6629 21 14 9.1555 8.3844 -4.0396 22 1 9.3255 8.5554 -2.5744 23 1 8.0328 9.2352 -4.5099 24 1 10.4053 8.7861 -4.7337 25 6 8.2860 5.3067 -0.9262 26 6 7.1162 5.7416 -0.0213 27 1 7.4604 5.8203 1.0100 28 6 5.4845 1.1053 -0.0079 29 8 4.2630 0.5428 -0.0019 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8898 35 1 4.1724 4.3434 -0.9038 36 1 4.1482 5.1160 0.6934 37 1 4.5926 6.3609 -2.0142 38 1 3.4354 6.8151 -0.7469 39 1 7.7120 8.0774 -2.2292 40 1 6.3276 7.0366 -2.6587 41 1 8.3240 5.2975 -5.8538 42 1 8.2545 4.2289 -1.0861 43 1 9.2355 5.5903 -0.4722 44 1 6.4308 0.5849 -0.0144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083131165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:58 Heat of formation + Delta-G solvation = -39.131889 kcal Electronic energy + Delta-G solvation = -30639.827529 eV Core-core repulsion = 26368.532336 eV Total energy + Delta-G solvation = -4271.295193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -44.63723 -42.21564 -40.11600 -39.76489 -37.81952 -36.57204 -35.83872 -34.54226 -32.90106 -32.04514 -30.78805 -29.62684 -29.43027 -26.43085 -25.36748 -24.80786 -24.47623 -23.50731 -22.39823 -21.72909 -20.74952 -19.65214 -19.36531 -18.72338 -18.59296 -18.40703 -17.56331 -17.33279 -16.82808 -16.69554 -16.36971 -16.24885 -15.98223 -15.79462 -15.60248 -15.40863 -14.68064 -14.51200 -14.45539 -14.06329 -13.93058 -13.61602 -13.57615 -13.34166 -13.08877 -12.96030 -12.72046 -12.66918 -12.51827 -12.29851 -12.05290 -11.84436 -11.79849 -11.46328 -11.35076 -11.14054 -10.51747 -10.45256 -9.92409 -9.58457 -9.08375 -8.73865 -5.40500 -0.05946 0.79001 0.84830 1.42883 1.50512 1.52399 1.69835 1.75914 2.05048 2.52787 2.61900 2.87414 3.02247 3.36120 3.51996 3.56930 3.66353 3.85019 3.91690 3.93885 3.95456 4.03836 4.13643 4.21109 4.25116 4.29439 4.41179 4.44922 4.55461 4.74804 4.78512 4.84105 4.86713 4.88444 4.96577 4.99085 5.09546 5.18632 5.56916 5.62474 5.67517 6.02085 6.09413 6.24457 6.40156 6.77118 6.90153 7.48981 8.15772 8.70318 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.003297 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.368390 B = 8491.357047 C = 8699.046261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.253 6.253 4 C 0.385 3.615 5 N -0.472 5.472 6 C -0.075 4.075 7 C 0.588 3.412 8 O -0.547 6.547 9 N -0.576 5.576 10 C 0.085 3.915 11 C 0.052 3.948 12 O -0.365 6.365 13 C 0.098 3.902 14 H 0.148 0.852 15 C 0.090 3.910 16 N -0.613 5.613 17 C -0.341 4.341 18 H 0.033 0.967 19 C -0.049 4.049 20 N -0.925 5.925 21 Si 1.076 2.924 22 H -0.255 1.255 23 H -0.285 1.285 24 H -0.292 1.292 25 C 0.101 3.899 26 C 0.118 3.882 27 H 0.106 0.894 28 C 0.031 3.969 29 O -0.215 6.215 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.031 0.969 38 H 0.146 0.854 39 H 0.038 0.962 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.071 0.929 43 H 0.032 0.968 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.839 -11.420 17.176 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.162 6.162 4 C 0.139 3.861 5 N -0.219 5.219 6 C -0.192 4.192 7 C 0.377 3.623 8 O -0.427 6.427 9 N -0.307 5.307 10 C -0.037 4.037 11 C -0.025 4.025 12 O -0.282 6.282 13 C 0.039 3.961 14 H 0.166 0.834 15 C -0.035 4.035 16 N -0.342 5.342 17 C -0.469 4.469 18 H 0.051 0.949 19 C -0.248 4.248 20 N -0.564 5.564 21 Si 0.901 3.099 22 H -0.181 1.181 23 H -0.212 1.212 24 H -0.220 1.220 25 C -0.023 4.023 26 C 0.013 3.987 27 H 0.124 0.876 28 C -0.042 4.042 29 O -0.106 6.106 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.164 0.836 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -17.580 -9.304 16.551 25.875 hybrid contribution 0.523 -2.791 -0.225 2.848 sum -17.056 -12.095 16.326 26.528 Atomic orbital electron populations 1.21857 0.89662 1.05064 1.03932 1.23446 0.98029 0.77802 1.04074 1.86423 1.07676 1.33239 1.88817 1.23630 0.84203 0.81563 0.96745 1.71351 1.03719 1.21599 1.25210 1.21408 0.90086 0.94424 1.13291 1.17160 0.86445 0.81985 0.76694 1.90718 1.18937 1.81554 1.51506 1.46565 1.08398 1.05353 1.70393 1.22097 0.79592 0.98630 1.03427 1.22615 0.94872 0.88068 0.96916 1.86910 1.14117 1.44981 1.82188 1.22514 0.83133 0.95820 0.94604 0.83425 1.22261 0.93116 0.91564 0.96584 1.44518 1.51274 1.32763 1.05617 1.19560 1.39700 0.96921 0.90743 0.94925 1.27017 0.98106 1.08020 0.91611 1.70979 1.45023 1.18954 1.21449 0.83794 0.77009 0.72877 0.76257 1.18050 1.21182 1.22006 1.22260 0.94949 0.99351 0.85784 1.21642 0.87094 0.89462 1.00502 0.87641 1.25454 0.86686 0.91993 1.00076 1.84419 1.15893 1.38707 1.71534 0.87122 0.91039 0.91429 0.90071 0.89518 0.87596 0.89468 0.95077 0.83645 0.94484 0.96237 0.93819 0.91158 0.94996 0.72149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 71.98 0.74 -0.13 16 2 C 0.04 0.40 6.38 71.98 0.46 0.86 16 3 O -0.25 -4.62 10.19 -64.19 -0.65 -5.28 16 4 C 0.38 8.62 8.98 130.43 1.17 9.79 16 5 N -0.47 -12.76 7.77 -419.39 -3.26 -16.02 16 6 C -0.07 -2.15 6.53 40.31 0.26 -1.89 16 7 C 0.59 20.70 7.16 86.64 0.62 21.32 16 8 O -0.55 -21.69 13.74 -4.09 -0.06 -21.75 16 9 N -0.58 -19.88 3.09 -810.38 -2.50 -22.38 16 10 C 0.08 2.48 5.14 86.33 0.44 2.93 16 11 C 0.05 1.50 6.72 71.64 0.48 1.98 16 12 O -0.37 -11.68 10.24 -146.16 -1.50 -13.17 16 13 C 0.10 3.46 3.81 30.81 0.12 3.57 16 14 H 0.15 4.33 8.14 -2.38 -0.02 4.31 16 15 C 0.09 4.10 5.54 86.64 0.48 4.58 16 16 N -0.61 -32.19 3.16 -696.31 -2.20 -34.39 16 17 C -0.34 -20.98 10.20 84.03 0.86 -20.13 16 18 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16 19 C -0.05 -3.02 5.23 84.86 0.44 -2.58 16 20 N -0.92 -60.17 13.70 21.65 0.30 -59.87 16 21 Si 1.08 54.11 26.24 68.60 1.80 55.91 16 22 H -0.26 -11.73 6.17 99.48 0.61 -11.11 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 25 C 0.10 4.60 6.29 86.70 0.55 5.14 16 26 C 0.12 4.24 3.41 45.65 0.16 4.39 16 27 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 28 C 0.03 0.67 11.93 67.28 0.80 1.47 16 29 O -0.21 -4.25 10.20 18.91 0.19 -4.06 16 30 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.11 3.25 5.40 -2.39 -0.01 3.24 16 36 H 0.09 2.26 8.06 -2.39 -0.02 2.25 16 37 H 0.03 1.06 6.84 -2.39 -0.02 1.04 16 38 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.04 1.72 3.86 -2.39 -0.01 1.71 16 40 H 0.02 0.97 6.56 -2.39 -0.02 0.95 16 41 H 0.25 16.62 8.73 -92.71 -0.81 15.81 16 42 H 0.07 3.52 4.77 -13.20 -0.06 3.46 16 43 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.26 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -79.28 349.99 0.56 -78.72 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.86 Total: 10.98 kcal Atomic # 6 Polarization: 23.74 SS G_CDS: 7.58 Total: 31.32 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -7.67 Total: -132.67 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -2.01 Total: -44.26 kcal Atomic # 14 Polarization: 54.11 SS G_CDS: 1.80 Total: 55.91 kcal Total: -79.28 0.56 -78.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083131165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.593 kcal (2) G-P(sol) polarization free energy of solvation -79.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds