Wall clock time and date at job start Tue Mar 31 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47419 * 2 1 4 4 C 1.35730 * 117.00462 * 180.02562 * 3 2 1 5 5 C 1.41855 * 126.78744 * 179.97438 * 4 3 2 6 6 C 1.36660 * 103.81186 * 179.97438 * 5 4 3 7 7 C 1.47544 * 126.88139 * 180.02562 * 6 5 4 8 8 O 1.21577 * 119.99710 * 353.02440 * 7 6 5 9 9 N 1.34770 * 119.99853 * 173.02528 * 7 6 5 10 10 C 1.47058 * 120.11667 * 182.77623 * 9 7 6 11 11 C 1.53950 * 107.14011 * 130.18281 * 10 9 7 12 12 O 1.42653 * 108.29727 * 55.82845 * 11 10 9 13 13 C 1.42771 * 115.69142 * 295.41979 * 12 11 10 14 14 H 1.09000 * 112.73790 * 290.33671 * 13 12 11 15 15 C 1.55401 * 107.09481 * 166.05126 * 13 12 11 16 16 N 1.47479 * 104.78360 * 281.69216 * 15 13 12 17 17 C 1.36938 * 125.68981 * 155.63625 * 16 15 13 18 18 H 1.08003 * 119.99825 * 179.97438 * 17 16 15 19 19 C 1.38808 * 120.00033 * 359.97026 * 17 16 15 20 20 N 1.31617 * 119.99905 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00037 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46927 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46908 * 120.00096 * 21 19 17 24 24 H 1.48498 * 109.46906 * 239.99675 * 21 19 17 25 25 C 1.47216 * 108.62182 * 335.59676 * 16 15 13 26 26 C 1.45658 * 120.12317 * 3.05546 * 9 7 6 27 27 H 1.09002 * 109.95463 * 345.45712 * 26 9 7 28 28 O 1.34661 * 106.24058 * 0.02562 * 6 5 4 29 29 N 1.20873 * 111.63574 * 0.02562 * 28 6 5 30 30 H 1.08996 * 109.46908 * 60.00200 * 1 2 3 31 31 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47176 * 300.00550 * 1 2 3 33 33 H 1.09001 * 109.47176 * 239.99450 * 2 1 3 34 34 H 1.09002 * 109.47286 * 120.00030 * 2 1 3 35 35 H 1.07996 * 128.09283 * 0.23202 * 5 4 3 36 36 H 1.08992 * 109.87990 * 249.70586 * 10 9 7 37 37 H 1.09004 * 109.87570 * 10.78474 * 10 9 7 38 38 H 1.08996 * 109.82654 * 296.07661 * 11 10 9 39 39 H 1.08998 * 109.62233 * 175.46179 * 11 10 9 40 40 H 1.09004 * 110.37666 * 40.51535 * 15 13 12 41 41 H 1.08996 * 110.38051 * 162.75158 * 15 13 12 42 42 H 0.97008 * 120.00072 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.95957 * 241.89649 * 25 16 15 44 44 H 1.09000 * 109.96117 * 120.65655 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.0453 2.7627 -0.0012 6 6 5.3625 2.3988 -0.0009 7 6 6.5303 3.3005 -0.0008 8 8 6.3727 4.4992 -0.1288 9 7 7.7717 2.7953 0.1411 10 6 8.9323 3.6963 0.2028 11 6 9.7623 3.2834 1.4319 12 8 10.0887 1.9002 1.3078 13 6 8.9826 0.9981 1.3384 14 1 8.5164 0.9362 2.3218 15 6 9.5019 -0.3785 0.8383 16 7 9.5668 -0.2458 -0.6291 17 6 10.3723 -0.9751 -1.4624 18 1 10.3451 -0.8015 -2.5280 19 6 11.2239 -1.9375 -0.9375 20 7 11.2567 -2.1493 0.3611 21 14 12.3233 -2.9319 -2.0741 22 1 12.0990 -2.5044 -3.4785 23 1 13.7450 -2.7064 -1.7096 24 1 12.0001 -4.3748 -1.9377 25 6 8.6204 0.8009 -1.0487 26 6 7.9692 1.3548 0.2279 27 1 7.0172 0.8597 0.4194 28 8 5.3812 1.0523 -0.0008 29 7 4.2639 0.5911 -0.0014 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.6294 3.7594 0.0021 36 1 9.5298 3.5935 -0.7029 37 1 8.5958 4.7274 0.3110 38 1 9.1821 3.4435 2.3406 39 1 10.6773 3.8744 1.4710 40 1 10.4926 -0.5811 1.2452 41 1 8.8080 -1.1708 1.1190 42 1 11.8520 -2.8216 0.7280 43 1 7.8581 0.3738 -1.7002 44 1 9.1527 1.5965 -1.5702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083145624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:32 Heat of formation + Delta-G solvation = 14.762653 kcal Electronic energy + Delta-G solvation = -30503.807564 eV Core-core repulsion = 26234.849414 eV Total energy + Delta-G solvation = -4268.958150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.14426 -40.53183 -39.20939 -38.56985 -35.72360 -34.90141 -33.67423 -32.42359 -32.02564 -31.43300 -29.88901 -28.01246 -27.36080 -25.00728 -24.42913 -23.82761 -23.39726 -22.38590 -21.02798 -20.39527 -19.92327 -18.26498 -17.97954 -17.34403 -16.95386 -16.55980 -16.36857 -16.18539 -15.51486 -15.26548 -15.15248 -14.75580 -14.58280 -14.22123 -13.98651 -13.73887 -13.40943 -13.35594 -13.04312 -12.89646 -12.65004 -12.21769 -11.88914 -11.85721 -11.49503 -11.44482 -11.26694 -11.16287 -10.95712 -10.78998 -10.67076 -10.52480 -10.15635 -10.03328 -9.87247 -9.67679 -9.55180 -9.47974 -8.70471 -8.42959 -6.87612 -5.67359 -3.08590 0.60244 1.94361 2.35281 2.36406 2.80992 3.05555 3.40964 3.46535 3.48857 3.88100 4.15319 4.29329 4.49159 4.56470 4.58690 4.66195 4.85324 4.89921 4.98977 5.08303 5.21043 5.25584 5.29920 5.35709 5.41529 5.45944 5.49495 5.56898 5.64879 5.67273 5.73252 5.89133 6.05085 6.17291 6.37190 6.52002 6.58171 6.74709 7.13606 7.21874 7.54919 7.67968 7.73511 7.87153 7.98789 8.33466 9.18041 9.79030 10.41014 11.37516 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.003639 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.469225 B = 7692.543570 C = 9409.568778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.206 3.794 5 C -0.154 4.154 6 C -0.055 4.055 7 C 0.603 3.397 8 O -0.518 6.518 9 N -0.580 5.580 10 C 0.078 3.922 11 C 0.047 3.953 12 O -0.351 6.351 13 C 0.055 3.945 14 H 0.073 0.927 15 C 0.160 3.840 16 N -0.593 5.593 17 C -0.219 4.219 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.916 3.084 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.137 3.863 26 C 0.079 3.921 27 H 0.117 0.883 28 O 0.123 5.877 29 N -0.388 5.388 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.189 0.811 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.033 0.967 42 H 0.253 0.747 43 H 0.030 0.970 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.497 9.112 2.974 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.009 3.991 5 C -0.177 4.177 6 C -0.121 4.121 7 C 0.388 3.612 8 O -0.395 6.395 9 N -0.311 5.311 10 C -0.043 4.043 11 C -0.031 4.031 12 O -0.269 6.269 13 C -0.004 4.004 14 H 0.091 0.909 15 C 0.034 3.966 16 N -0.320 5.320 17 C -0.347 4.347 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.746 3.254 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.010 3.990 26 C -0.026 4.026 27 H 0.134 0.866 28 O 0.060 5.940 29 N -0.113 5.113 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.207 0.793 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.122 0.878 40 H 0.142 0.858 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -15.505 8.386 2.871 17.860 hybrid contribution -0.061 0.076 -0.605 0.612 sum -15.566 8.462 2.267 17.862 Atomic orbital electron populations 1.21793 0.92146 1.03261 1.03588 1.22861 0.95857 0.80446 1.02750 1.86196 1.12947 1.30414 1.89384 1.21797 0.85881 0.90359 1.01109 1.22115 0.89900 0.99227 1.06488 1.23993 0.96395 0.84529 1.07166 1.16634 0.80924 0.85921 0.77723 1.90840 1.84576 1.13285 1.50828 1.47703 1.05624 1.08150 1.69636 1.22640 0.86374 0.94486 1.00843 1.22969 0.99615 0.85133 0.95366 1.88034 1.31310 1.13880 1.93678 1.24181 0.86931 0.94029 0.95302 0.90892 1.22175 1.03692 0.86672 0.84034 1.44310 1.44284 1.40799 1.02577 1.19077 1.14040 1.12212 0.89391 0.90333 1.24759 1.00049 0.99444 0.96159 1.69727 1.41303 1.36252 1.09696 0.85980 0.80263 0.79645 0.79469 1.20568 1.21726 1.21770 1.21342 0.92564 0.92230 0.92858 1.23054 1.01575 0.78330 0.99603 0.86637 1.85181 1.22064 1.18501 1.68288 1.74049 0.90827 1.22561 1.23892 0.91366 0.89891 0.91386 0.91352 0.91379 0.79343 0.89551 0.88042 0.93218 0.87824 0.85785 0.94899 0.93647 0.95186 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.53 6.38 37.16 0.24 0.76 16 3 O -0.28 -3.36 10.21 -18.90 -0.19 -3.55 16 4 C 0.21 2.75 8.00 -16.72 -0.13 2.62 16 5 C -0.15 -1.95 10.98 -38.77 -0.43 -2.37 16 6 C -0.06 -0.78 6.94 -36.36 -0.25 -1.04 16 7 C 0.60 9.12 7.68 -12.47 -0.10 9.02 16 8 O -0.52 -8.46 16.32 5.30 0.09 -8.38 16 9 N -0.58 -8.93 2.72 -165.63 -0.45 -9.38 16 10 C 0.08 1.08 6.39 -3.24 -0.02 1.06 16 11 C 0.05 0.65 7.04 37.65 0.26 0.92 16 12 O -0.35 -6.61 10.09 -35.23 -0.36 -6.97 16 13 C 0.06 1.03 4.12 -24.66 -0.10 0.93 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.16 3.73 5.47 -2.23 -0.01 3.72 16 16 N -0.59 -14.79 3.40 -169.98 -0.58 -15.37 16 17 C -0.22 -5.99 10.28 -15.06 -0.15 -6.14 16 18 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -26.17 10.09 55.49 0.56 -25.61 16 21 Si 0.92 21.83 29.55 -169.99 -5.02 16.80 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.14 2.84 6.87 -3.32 -0.02 2.81 16 26 C 0.08 1.37 2.88 -67.26 -0.19 1.17 16 27 H 0.12 1.95 4.05 -54.01 -0.22 1.73 16 28 O 0.12 1.88 7.76 15.50 0.12 2.00 16 29 N -0.39 -5.78 11.50 30.47 0.35 -5.42 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.09 1.25 7.55 -51.93 -0.39 0.85 16 37 H 0.10 1.26 7.05 -51.93 -0.37 0.89 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.12 3.32 5.86 -51.93 -0.30 3.02 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.66 7.23 -51.93 -0.38 0.29 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -31.27 359.11 -6.55 -37.82 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.85 Total: 0.12 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -0.63 Total: 12.52 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.12 Total: -55.78 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.34 Total: -16.90 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.27 -6.55 -37.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083145624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.582 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds