Wall clock time and date at job start Tue Mar 31 2020 22:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47419 * 2 1 4 4 C 1.35730 * 117.00462 * 180.02562 * 3 2 1 5 5 C 1.41855 * 126.78744 * 179.97438 * 4 3 2 6 6 C 1.36660 * 103.81186 * 179.97438 * 5 4 3 7 7 C 1.47544 * 126.88139 * 180.02562 * 6 5 4 8 8 O 1.21577 * 119.99710 * 353.02440 * 7 6 5 9 9 N 1.34770 * 119.99853 * 173.02528 * 7 6 5 10 10 C 1.47058 * 120.11667 * 182.77623 * 9 7 6 11 11 C 1.53950 * 107.14011 * 130.18281 * 10 9 7 12 12 O 1.42653 * 108.29727 * 55.82845 * 11 10 9 13 13 C 1.42771 * 115.69142 * 295.41979 * 12 11 10 14 14 H 1.09000 * 112.73790 * 290.33671 * 13 12 11 15 15 C 1.55401 * 107.09481 * 166.05126 * 13 12 11 16 16 N 1.47479 * 104.78360 * 281.69216 * 15 13 12 17 17 C 1.36938 * 125.68981 * 155.63625 * 16 15 13 18 18 H 1.08003 * 119.99825 * 179.97438 * 17 16 15 19 19 C 1.38808 * 120.00033 * 359.97026 * 17 16 15 20 20 N 1.31617 * 119.99905 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00037 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46927 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46908 * 120.00096 * 21 19 17 24 24 H 1.48498 * 109.46906 * 239.99675 * 21 19 17 25 25 C 1.47216 * 108.62182 * 335.59676 * 16 15 13 26 26 C 1.45658 * 120.12317 * 3.05546 * 9 7 6 27 27 H 1.09002 * 109.95463 * 345.45712 * 26 9 7 28 28 O 1.34661 * 106.24058 * 0.02562 * 6 5 4 29 29 N 1.20873 * 111.63574 * 0.02562 * 28 6 5 30 30 H 1.08996 * 109.46908 * 60.00200 * 1 2 3 31 31 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47176 * 300.00550 * 1 2 3 33 33 H 1.09001 * 109.47176 * 239.99450 * 2 1 3 34 34 H 1.09002 * 109.47286 * 120.00030 * 2 1 3 35 35 H 1.07996 * 128.09283 * 0.23202 * 5 4 3 36 36 H 1.08992 * 109.87990 * 249.70586 * 10 9 7 37 37 H 1.09004 * 109.87570 * 10.78474 * 10 9 7 38 38 H 1.08996 * 109.82654 * 296.07661 * 11 10 9 39 39 H 1.08998 * 109.62233 * 175.46179 * 11 10 9 40 40 H 1.09004 * 110.37666 * 40.51535 * 15 13 12 41 41 H 1.08996 * 110.38051 * 162.75158 * 15 13 12 42 42 H 0.97008 * 120.00072 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.95957 * 241.89649 * 25 16 15 44 44 H 1.09000 * 109.96117 * 120.65655 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.0453 2.7627 -0.0012 6 6 5.3625 2.3988 -0.0009 7 6 6.5303 3.3005 -0.0008 8 8 6.3727 4.4992 -0.1288 9 7 7.7717 2.7953 0.1411 10 6 8.9323 3.6963 0.2028 11 6 9.7623 3.2834 1.4319 12 8 10.0887 1.9002 1.3078 13 6 8.9826 0.9981 1.3384 14 1 8.5164 0.9362 2.3218 15 6 9.5019 -0.3785 0.8383 16 7 9.5668 -0.2458 -0.6291 17 6 10.3723 -0.9751 -1.4624 18 1 10.3451 -0.8015 -2.5280 19 6 11.2239 -1.9375 -0.9375 20 7 11.2567 -2.1493 0.3611 21 14 12.3233 -2.9319 -2.0741 22 1 12.0990 -2.5044 -3.4785 23 1 13.7450 -2.7064 -1.7096 24 1 12.0001 -4.3748 -1.9377 25 6 8.6204 0.8009 -1.0487 26 6 7.9692 1.3548 0.2279 27 1 7.0172 0.8597 0.4194 28 8 5.3812 1.0523 -0.0008 29 7 4.2639 0.5911 -0.0014 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.6294 3.7594 0.0021 36 1 9.5298 3.5935 -0.7029 37 1 8.5958 4.7274 0.3110 38 1 9.1821 3.4435 2.3406 39 1 10.6773 3.8744 1.4710 40 1 10.4926 -0.5811 1.2452 41 1 8.8080 -1.1708 1.1190 42 1 11.8520 -2.8216 0.7280 43 1 7.8581 0.3738 -1.7002 44 1 9.1527 1.5965 -1.5702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083145624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:31 Heat of formation + Delta-G solvation = -7.829746 kcal Electronic energy + Delta-G solvation = -30504.787244 eV Core-core repulsion = 26234.849414 eV Total energy + Delta-G solvation = -4269.937830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -46.22327 -41.84111 -40.11865 -39.93328 -37.34933 -36.24470 -34.66494 -34.09030 -33.29963 -32.20219 -31.42841 -29.50157 -29.01835 -26.50164 -25.85802 -24.78090 -24.42750 -23.55776 -22.34125 -22.03176 -21.13255 -19.43553 -19.14843 -19.02093 -18.13731 -17.91921 -17.59157 -17.05905 -16.89616 -16.78240 -16.44982 -16.12563 -15.78550 -15.48102 -15.47202 -14.89014 -14.86084 -14.53151 -14.10779 -14.09524 -13.59005 -13.55754 -13.46215 -13.06742 -12.96529 -12.73213 -12.65842 -12.48736 -12.39315 -12.15462 -12.12290 -11.99349 -11.82470 -11.74292 -11.17761 -11.11202 -11.01638 -10.76303 -10.50342 -9.73908 -8.87806 -7.74752 -5.18530 -0.49975 0.90439 1.21131 1.41074 1.50157 1.50876 1.60819 1.64996 1.91303 2.52124 2.80811 2.89855 3.15381 3.36790 3.46297 3.55364 3.65344 3.83548 3.87177 3.91581 3.98437 4.02724 4.08259 4.22739 4.26777 4.38029 4.43074 4.53269 4.58577 4.74608 4.78683 4.82519 4.85454 4.88860 4.95047 5.14781 5.14937 5.36818 5.49463 5.77084 5.82907 5.91550 6.26871 6.47279 6.53101 6.89202 7.11796 7.77295 8.39643 9.27658 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.003639 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.469225 B = 7692.543570 C = 9409.568778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.285 6.285 4 C 0.208 3.792 5 C -0.137 4.137 6 C -0.069 4.069 7 C 0.611 3.389 8 O -0.527 6.527 9 N -0.581 5.581 10 C 0.078 3.922 11 C 0.046 3.954 12 O -0.382 6.382 13 C 0.070 3.930 14 H 0.100 0.900 15 C 0.161 3.839 16 N -0.613 5.613 17 C -0.235 4.235 18 H 0.078 0.922 19 C -0.061 4.061 20 N -0.944 5.944 21 Si 0.979 3.021 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.137 3.863 26 C 0.098 3.902 27 H 0.125 0.875 28 O 0.106 5.894 29 N -0.404 5.404 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.214 0.786 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.016 0.984 42 H 0.248 0.752 43 H 0.028 0.972 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.968 10.562 2.975 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 O -0.192 6.192 4 C 0.010 3.990 5 C -0.159 4.159 6 C -0.134 4.134 7 C 0.397 3.603 8 O -0.404 6.404 9 N -0.312 5.312 10 C -0.043 4.043 11 C -0.031 4.031 12 O -0.301 6.301 13 C 0.010 3.990 14 H 0.117 0.883 15 C 0.036 3.964 16 N -0.339 5.339 17 C -0.364 4.364 18 H 0.096 0.904 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.807 3.193 22 H -0.194 1.194 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.011 3.989 26 C -0.007 4.007 27 H 0.141 0.859 28 O 0.044 5.956 29 N -0.132 5.132 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.146 0.854 40 H 0.106 0.894 41 H 0.034 0.966 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -16.992 9.878 2.866 19.863 hybrid contribution 0.307 -0.330 -0.624 0.770 sum -16.685 9.548 2.243 19.354 Atomic orbital electron populations 1.21817 0.89710 1.04656 1.03936 1.23123 0.97748 0.79351 1.02455 1.86227 1.11990 1.31883 1.89060 1.22000 0.86415 0.90390 1.00202 1.22440 0.89098 0.99987 1.04371 1.23945 0.96723 0.84292 1.08470 1.16606 0.80834 0.85820 0.77029 1.90837 1.84700 1.13651 1.51259 1.47666 1.06366 1.07255 1.69890 1.22744 0.85826 0.95145 1.00546 1.23252 1.01230 0.82593 0.96036 1.87966 1.31826 1.16296 1.94007 1.23906 0.86884 0.91582 0.96597 0.88276 1.21895 1.01520 0.89468 0.83539 1.44535 1.44810 1.41384 1.03193 1.19384 1.14456 1.12635 0.89903 0.90374 1.25545 1.01530 1.00703 0.97571 1.69979 1.41812 1.36552 1.11039 0.85008 0.78113 0.77897 0.78253 1.19426 1.21895 1.21852 1.21405 0.91795 0.91145 0.94588 1.22682 1.01241 0.79649 0.97143 0.85852 1.85113 1.22364 1.18985 1.69130 1.74041 0.91032 1.23258 1.24890 0.91072 0.87964 0.90939 0.91815 0.91566 0.76903 0.90417 0.86023 0.91360 0.85388 0.89363 0.96629 0.94203 0.95419 0.95443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 10.28 71.98 0.74 -0.84 16 2 C 0.05 0.84 6.38 71.98 0.46 1.30 16 3 O -0.28 -6.30 10.21 -90.53 -0.92 -7.23 16 4 C 0.21 5.23 8.00 85.78 0.69 5.91 16 5 C -0.14 -3.14 10.98 22.80 0.25 -2.89 16 6 C -0.07 -1.85 6.94 24.36 0.17 -1.68 16 7 C 0.61 17.25 7.68 86.70 0.67 17.91 16 8 O -0.53 -15.85 16.32 -3.96 -0.06 -15.92 16 9 N -0.58 -16.91 2.72 -796.21 -2.17 -19.07 16 10 C 0.08 2.01 6.39 86.59 0.55 2.56 16 11 C 0.05 1.16 7.04 72.30 0.51 1.67 16 12 O -0.38 -14.10 10.09 -148.98 -1.50 -15.60 16 13 C 0.07 2.57 4.12 31.94 0.13 2.70 16 14 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 15 C 0.16 7.77 5.47 87.02 0.48 8.24 16 16 N -0.61 -31.31 3.40 -691.71 -2.35 -33.66 16 17 C -0.24 -13.13 10.28 84.03 0.86 -12.26 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 19 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 20 N -0.94 -55.34 10.09 21.65 0.22 -55.12 16 21 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 C 0.14 5.72 6.87 86.46 0.59 6.32 16 26 C 0.10 3.34 2.88 45.88 0.13 3.47 16 27 H 0.12 4.09 4.05 -35.37 -0.14 3.95 16 28 O 0.11 3.14 7.76 65.65 0.51 3.65 16 29 N -0.40 -11.72 11.50 -172.02 -1.98 -13.70 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.21 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.08 2.14 7.55 -2.39 -0.02 2.12 16 37 H 0.12 2.66 7.05 -2.39 -0.02 2.64 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.09 4.93 5.86 -2.38 -0.01 4.92 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.03 1.17 7.23 -2.39 -0.02 1.15 16 Total: -1.00 -68.27 359.11 1.36 -66.91 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.90 Total: 12.68 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: 6.70 Total: 29.47 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -6.28 Total: -121.56 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.98 Total: -35.09 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.27 1.36 -66.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083145624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.081 kcal (2) G-P(sol) polarization free energy of solvation -68.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds